Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A829G20 Lonicera japonica HOM05D029725 ORTHO05D003000 6.8e-133 477.2 229 100.0
Lj5A831G12 Lonicera japonica HOM05D029725 ORTHO05D234351 7.7e-92 340.9 172 94.2
Lj5A830G8 Lonicera japonica HOM05D029725 ORTHO05D003000 2.7e-65 252.7 189 67.2
Lj5A834T31 Lonicera japonica HOM05D029725 ORTHO05D003000 1.1e-16 91.3 143 37.8
Manes.04G057000 Manihot esculenta HOM05D002658 ORTHO05D003000 1.8e-16 90.5 205 33.2
Manes.04G053300 Manihot esculenta HOM05D002658 ORTHO05D003000 9.9e-15 84.7 170 32.9
ECA233G2635 Erigeron canadensis HOM05D000058 ORTHO05D000077 2.2e-14 83.6 209 30.6
CDE01G0413 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 4.9e-14 82.4 165 35.8
CDE12G0003 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 6.4e-14 82.0 165 35.8
vmacro10896 Vaccinium macrocarpon HOM05D002658 ORTHO05D003000 6.4e-14 82.0 220 29.5
CSS0029052 Camellia sinensis var. sinensis HOM05D002658 ORTHO05D003000 8.4e-14 81.6 168 32.1
MBI02_g07021_MAGBIO Magnolia biondii HOM05D002658 ORTHO05D003000 8.4e-14 81.6 158 31.6
GSVIVG01012042001 Vitis vinifera HOM05D002658 ORTHO05D003000 8.4e-14 81.6 160 33.1
Dinv17606 Davidia involucrata HOM05D002658 ORTHO05D003000 1.1e-13 81.3 207 31.4
ATR1098G121 Amborella trichopoda HOM05D002658 ORTHO05D003000 2.4e-13 80.1 205 32.7
Actinidia04307 Actinidia chinensis HOM05D002658 ORTHO05D003000 3.2e-13 79.7 203 29.6
DCAR_023453 Daucus carota HOM05D002658 ORTHO05D003000 3.2e-13 79.7 167 32.3
MSTRG.8085 Avicennia marina HOM05D002658 ORTHO05D003000 4.2e-13 79.3 173 32.4
Hund08548 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.2e-13 79.3 168 34.5
TWI53G1249 Tripterygium wilfordii HOM05D002658 ORTHO05D003000 5.4e-13 79.0 211 29.9
Ah.01g012180 Amaranthus hybridus HOM05D002658 ORTHO05D003000 7.1e-13 78.6 156 32.7
CiPaw.06G060000 Carya illinoinensis HOM05D002658 ORTHO05D003000 7.1e-13 78.6 201 30.3
ClCG10G011940 Citrullus lanatus HOM05D002658 ORTHO05D003000 7.1e-13 78.6 167 30.5
DCAR_002571 Daucus carota HOM05D002658 ORTHO05D003000 7.1e-13 78.6 194 32.5
Prupe.1G346800 Prunus persica HOM05D002658 ORTHO05D003000 7.1e-13 78.6 167 32.9
Sed0002082 Sechium edule HOM05D002658 ORTHO05D003000 7.1e-13 78.6 164 30.5
Atru.chr11.1170 Acer truncatum HOM05D002658 ORTHO05D003000 2.1e-12 77.0 156 31.4
CDE05G1740 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 2.1e-12 77.0 206 30.1
Ciclev10030875m.g Citrus clementina HOM05D002658 ORTHO05D003000 2.1e-12 77.0 208 27.9
Psat7g173280 Pisum sativum HOM05D002658 ORTHO05D003000 2.1e-12 77.0 193 30.6
Thecc.02G160500 Theobroma cacao HOM05D002658 ORTHO05D003000 2.1e-12 77.0 169 33.7
Hma1.2p1_1683F.1_g297380 Hydrangea macrophylla HOM05D002658 ORTHO05D003000 2.7e-12 76.6 202 32.2
PSO063G2038 Papaver somniferum HOM05D002658 ORTHO05D003000 2.7e-12 76.6 172 32.0
QL03p044151 Quercus lobata HOM05D002658 ORTHO05D003000 2.7e-12 76.6 204 30.9
Sed0005223 Sechium edule HOM05D002658 ORTHO05D003000 3.5e-12 76.3 160 31.9
Lj6C719G16 Lonicera japonica HOM05D002658 ORTHO05D003000 4.6e-12 75.9 200 32.0
PSO782G1034 Papaver somniferum HOM05D002658 ORTHO05D003000 4.6e-12 75.9 209 30.1
TPR.G32352 Trifolium pratense HOM05D002658 ORTHO05D003000 4.6e-12 75.9 193 28.0
MELO3C024024.2 Cucumis melo HOM05D002658 ORTHO05D003000 7.8e-12 75.1 203 28.1
Duzib052G0136 Durio zibethinus HOM05D002658 ORTHO05D003000 7.8e-12 75.1 167 31.7
Potri.007G071100 Populus trichocarpa HOM05D002658 ORTHO05D003000 7.8e-12 75.1 168 31.0
Sabra05G0077200 Salix brachista HOM05D002658 ORTHO05D003000 7.8e-12 75.1 211 29.9
CDE02G0625 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 1.3e-11 74.3 165 32.1
Duzib132G0973 Durio zibethinus HOM05D002658 ORTHO05D003000 1.7e-11 73.9 207 31.9
Oeu027908.2 Olea europaea HOM05D002658 ORTHO05D003000 2.3e-11 73.6 157 34.4
Sabra07G0059800 Salix brachista HOM05D002658 ORTHO05D003000 2.3e-11 73.6 165 32.1
Duzib248G1296 Durio zibethinus HOM05D002658 ORTHO05D003000 3.0e-11 73.2 166 33.1
THA.LOC104810678 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 3.0e-11 73.2 168 31.5
CARHR093990 Cardamine hirsuta HOM05D002658 ORTHO05D003000 3.9e-11 72.8 171 32.2
DCAR_002573 Daucus carota HOM05D002658 ORTHO05D003000 3.9e-11 72.8 198 29.3
Gohir.D12G137566 Gossypium hirsutum HOM05D002658 ORTHO05D003000 3.9e-11 72.8 167 31.1
Lj3C850T20 Lonicera japonica HOM05D002658 ORTHO05D003000 3.9e-11 72.8 171 31.6
ECA246G1081 Erigeron canadensis HOM05D002658 ORTHO05D003000 6.6e-11 72.0 211 28.4
Gorai.008G149100 Gossypium raimondii HOM05D002658 ORTHO05D003000 6.6e-11 72.0 167 31.1
Os08g0192900 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 6.6e-11 72.0 200 28.5
THA.LOC104820414 Tarenaya hassleriana HOM05D002658 ORTHO05D003000 6.6e-11 72.0 215 30.2
CsaV3_3G031420 Cucumis sativus L. HOM05D002658 ORTHO05D003000 8.7e-11 71.6 161 29.2
Zm00001eb046260 Zea mays HOM05D002658 ORTHO05D003000 1.1e-10 71.2 198 28.3
Ca_19028_v3 Cicer arietinum L. HOM05D002658 ORTHO05D003000 1.5e-10 70.9 160 30.0
Haze_11751 Corylus avellana HOM05D002658 ORTHO05D003000 1.5e-10 70.9 160 33.8
Glyma.12G027400 Glycine max HOM05D002658 ORTHO05D003000 2.5e-10 70.1 202 28.7
Gohir.A01G012800 Gossypium hirsutum HOM05D002658 ORTHO05D003000 2.5e-10 70.1 202 29.2
Gohir.D01G014000 Gossypium hirsutum HOM05D002658 ORTHO05D003000 2.5e-10 70.1 202 29.2
Gorai.002G015800 Gossypium raimondii HOM05D002658 ORTHO05D003000 2.5e-10 70.1 202 29.2
Os04g0620700 Oryza sativa ssp. japonica HOM05D002658 ORTHO05D003000 2.5e-10 70.1 208 29.3
FAN17G0854 Fragaria x ananassa HOM05D002658 ORTHO05D003000 3.3e-10 69.7 169 32.0
C08p04580 Brassica napus HOM05D002658 ORTHO05D003000 4.3e-10 69.3 170 32.9
Glyma.11G101500 Glycine max HOM05D002658 ORTHO05D003000 4.3e-10 69.3 209 29.2
Gohir.D13G061900 Gossypium hirsutum HOM05D002658 ORTHO05D003000 4.3e-10 69.3 169 31.4
Gorai.013G070400 Gossypium raimondii HOM05D002658 ORTHO05D003000 4.3e-10 69.3 169 31.4
EL10Ac9g22941 Beta vulgaris HOM05D002658 ORTHO05D003000 5.6e-10 68.9 162 30.9
BraA08t32458Z Brassica rapa HOM05D002658 ORTHO05D003000 7.3e-10 68.6 161 32.9
Rhsim09G0074900 Rhododendron simsii HOM05D002658 ORTHO05D003000 7.3e-10 68.6 199 28.6
BcaB04g17378 Brassica carinata HOM05D002658 ORTHO05D003000 1.3e-09 67.8 172 31.4
BraA05t21943Z Brassica rapa HOM05D002658 ORTHO05D003000 1.3e-09 67.8 163 31.3
Lj3g0010214 Lotus japonicus HOM05D002658 ORTHO05D003000 1.3e-09 67.8 171 31.0
HanXRQChr17g0544851 Helianthus annuus HOM05D002658 ORTHO05D003000 1.6e-09 67.4 154 27.9
Lalb_Chr01g0001461 Lupinus albus HOM05D002658 ORTHO05D003000 1.6e-09 67.4 175 29.1
Lalb_Chr03g0024791 Lupinus albus HOM05D002658 ORTHO05D003000 1.6e-09 67.4 155 29.7
AagrBONN_evm.TU.Sc2ySwM_368.1668 Anthoceros agrestis HOM05D002658 ORTHO05D003000 2.1e-09 67.0 163 30.7
A05p31000 Brassica napus HOM05D002658 ORTHO05D003000 3.6e-09 66.2 199 28.1
BcaC05g28595 Brassica carinata HOM05D002658 ORTHO05D003000 4.8e-09 65.9 152 29.6
C05p46990 Brassica napus HOM05D002658 ORTHO05D003000 4.8e-09 65.9 152 29.6
BolC5t33428H Brassica oleracea HOM05D002658 ORTHO05D003000 4.8e-09 65.9 152 29.6
BraA05t21942Z Brassica rapa HOM05D002658 ORTHO05D003000 4.8e-09 65.9 152 30.3
Gohir.A13G060000 Gossypium hirsutum HOM05D002658 ORTHO05D003000 4.8e-09 65.9 219 28.8
SalBow6G5085 Salvia bowleyana HOM05D002658 ORTHO05D003000 4.8e-09 65.9 227 28.2
BcaB06g25912 Brassica carinata HOM05D002658 ORTHO05D003000 6.2e-09 65.5 167 29.9
Lsat_1_v5_gn_3_35601 Lactuca sativa HOM05D002658 ORTHO05D003000 6.2e-09 65.5 168 30.4
Phvul.011G030600 Phaseolus vulgaris HOM05D002658 ORTHO05D003000 6.2e-09 65.5 172 29.7
AL1G55750 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 8.1e-09 65.1 208 29.3
FvH4_4g36861 Fragaria vesca HOM05D002658 ORTHO05D003000 8.1e-09 65.1 165 29.1
Medtr4g074930 Medicago truncatula HOM05D002658 ORTHO05D003000 8.1e-09 65.1 168 30.4
RcHm_v2.0_Chr4g0446621 Rosa chinensis HOM05D002658 ORTHO05D003000 8.1e-09 65.1 170 28.2
SEGI_27819 Sequoiadendron giganteum HOM05D002658 ORTHO05D003000 8.1e-09 65.1 155 30.3
HanXRQChr06g0171481 Helianthus annuus HOM05D002658 ORTHO05D003000 1.1e-08 64.7 166 27.1
A05p20830 Brassica napus HOM05D002658 ORTHO05D003000 1.4e-08 64.3 170 31.2
BraA05t20989Z Brassica rapa HOM05D002658 ORTHO05D003000 1.4e-08 64.3 170 31.2
Cpa.g.sc183.5 Carica papaya HOM05D002658 ORTHO05D003000 1.4e-08 64.3 191 28.8
FAN12G1156 Fragaria x ananassa HOM05D002658 ORTHO05D003000 1.4e-08 64.3 168 28.6
CARHR038910 Cardamine hirsuta HOM05D002658 ORTHO05D003000 1.8e-08 63.9 163 32.5
Lj5A812T9 Lonicera japonica HOM05D051633 ORTHO05D235325 1.8e-08 63.9 39 74.4
VMungo1127G1795 Vigna mungo HOM05D002658 ORTHO05D003000 1.8e-08 63.9 208 27.9
Lsat_1_v5_gn_4_65420 Lactuca sativa HOM05D002658 ORTHO05D003000 2.4e-08 63.5 166 26.5
Aa31LG10G5000 Aethionema arabicum HOM05D002658 ORTHO05D003000 3.1e-08 63.2 214 27.6
AT1G48920 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 3.1e-08 63.2 201 29.4
AT3G18610 Arabidopsis thaliana HOM05D002658 ORTHO05D003000 3.1e-08 63.2 157 28.7
BcaC05g27545 Brassica carinata HOM05D002658 ORTHO05D003000 3.1e-08 63.2 162 30.9
C05p35300 Brassica napus HOM05D002658 ORTHO05D003000 3.1e-08 63.2 162 30.9
BolC5t32244H Brassica oleracea HOM05D002658 ORTHO05D003000 3.1e-08 63.2 162 30.9
Thhalv10020940m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 3.1e-08 63.2 163 28.8
FAN07G0595 Fragaria x ananassa HOM05D002658 ORTHO05D003000 4.0e-08 62.8 166 27.1
ECA234G2787 Erigeron canadensis HOM05D002658 ORTHO05D003000 5.3e-08 62.4 168 28.0
Sp1g35830 Schrenkiella parvula HOM05D002658 ORTHO05D003000 5.3e-08 62.4 167 31.7
BcaC08g43092 Brassica carinata HOM05D002658 ORTHO05D003000 6.9e-08 62.0 213 29.1
C06p03520 Brassica napus HOM05D002658 ORTHO05D003000 6.9e-08 62.0 213 29.1
Thhalv10011361m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 6.9e-08 62.0 199 29.6
Lj5A813T11 Lonicera japonica HOM05D051633 ORTHO05D233936 9.0e-08 61.6 37 75.7
AL3G31920 Arabidopsis lyrata HOM05D002658 ORTHO05D003000 1.2e-07 61.2 205 27.3
Oeu028417.1 Olea europaea HOM05D002658 ORTHO05D003000 1.2e-07 61.2 162 30.2
SGA_v2.0_scaffold88G27231 Striga asiatica HOM05D002658 ORTHO05D003000 1.2e-07 61.2 188 28.7
Carub.0001s3809 Capsella rubella HOM05D002658 ORTHO05D003000 1.5e-07 60.8 160 31.9
BcaB02g11292 Brassica carinata HOM05D002658 ORTHO05D003000 2.0e-07 60.5 199 30.2
BolC6t35492H Brassica oleracea HOM05D002658 ORTHO05D003000 2.6e-07 60.1 213 28.6
PSO063G6725 Papaver somniferum HOM05D002658 ORTHO05D003000 2.6e-07 60.1 153 30.7
Peaxi162Scf00363g00520 Petunia axillaris HOM05D002658 ORTHO05D003000 2.6e-07 60.1 169 31.4
Aqoxy3G04264 Aquilegia oxysepala HOM05D002658 ORTHO05D003000 3.4e-07 59.7 166 28.3
A08p04310 Brassica napus HOM05D002658 ORTHO05D003000 3.4e-07 59.7 183 29.0
HPP92_014004 Vanilla planifolia HOM05D002658 ORTHO05D003000 3.4e-07 59.7 190 28.9
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 5.8e-07 58.9 172 30.2
Medtr1g036430 Medicago truncatula HOM05D002658 ORTHO05D003000 5.8e-07 58.9 200 26.0
BolC8t47262H Brassica oleracea HOM05D002658 ORTHO05D003000 9.9e-07 58.2 144 32.6
Pp3c1_36300 Physcomitrium patens HOM05D002658 ORTHO05D003000 9.9e-07 58.2 167 28.7
BcaB07g33701 Brassica carinata HOM05D002658 ORTHO05D003000 1.7e-06 57.4 162 29.0
Pp3c12_23930 Physcomitrium patens HOM05D002658 ORTHO05D003000 1.7e-06 57.4 179 26.8
HanXRQChr01g0028031 Helianthus annuus HOM05D002658 ORTHO05D003000 2.2e-06 57.0 157 26.1
A06p04110 Brassica napus HOM05D002658 ORTHO05D003000 2.9e-06 56.6 172 29.7
BraA06t23617Z Brassica rapa HOM05D002658 ORTHO05D003000 2.9e-06 56.6 172 29.7
SMO228G0128 Selaginella moellendorffii HOM05D002658 ORTHO05D003000 4.9e-06 55.8 148 27.0
arahy.Tifrunner.gnm1.ann1.L3BXHZ Arachis hypogaea HOM05D002658 ORTHO05D003000 6.4e-06 55.5 184 27.2
Carub.0003s1839 Capsella rubella HOM05D002658 ORTHO05D003000 6.4e-06 55.5 154 26.6


User provided reference genes

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