Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A537T14 Lonicera japonica HOM05D002081 ORTHO05D002088 1.5e-36 155.6 74 100.0
Dinv23946 Davidia involucrata HOM05D002081 ORTHO05D002088 5.6e-20 100.5 61 83.6
Hma1.2p1_0033F.1_g020140 Hydrangea macrophylla HOM05D002081 ORTHO05D002088 1.4e-18 95.9 61 78.7
Lsat_1_v5_gn_3_98040 Lactuca sativa HOM05D002081 ORTHO05D002088 1.4e-18 95.9 61 78.7
CAN.G1077.16 Capsicum annuum HOM05D002081 ORTHO05D002088 1.8e-18 95.5 61 77.0
PGSC0003DMG400028610 Solanum tuberosum HOM05D002081 ORTHO05D002088 6.9e-18 93.6 61 75.4
Nitab4.5_0005388g0090 Nicotiana tabacum HOM05D002081 ORTHO05D002088 9.0e-18 93.2 61 75.4
Nitab4.5_0008677g0010 Nicotiana tabacum HOM05D002081 ORTHO05D002088 9.0e-18 93.2 61 75.4
Actinidia19793 Actinidia chinensis HOM05D002081 ORTHO05D002088 1.2e-17 92.8 63 74.6
Dinv40279 Davidia involucrata HOM05D002081 ORTHO05D002088 1.5e-17 92.4 61 75.4
HanXRQChr15g0473061 Helianthus annuus HOM05D002081 ORTHO05D002088 2.0e-17 92.0 61 75.4
CSS0001800 Camellia sinensis var. sinensis HOM05D002081 ORTHO05D002088 3.4e-17 91.3 61 77.0
Peaxi162Scf00037g00230 Petunia axillaris HOM05D002081 ORTHO05D002088 3.4e-17 91.3 61 73.8
Solyc01g098900.3 Solanum lycopersicum HOM05D002081 ORTHO05D002088 4.5e-17 90.9 61 73.8
Sopen01g042440 Solanum pennellii HOM05D002081 ORTHO05D002088 4.5e-17 90.9 61 73.8
Duzib177G0896 Durio zibethinus HOM05D002081 ORTHO05D002088 1.3e-16 89.4 61 75.4
Eucgr.H04483 Eucalyptus grandis HOM05D002081 ORTHO05D002088 2.2e-16 88.6 61 73.8
MSTRG.22749 Avicennia marina HOM05D002081 ORTHO05D002088 4.9e-16 87.4 61 72.1
THA.LOC104802804 Tarenaya hassleriana HOM05D002081 ORTHO05D002088 4.9e-16 87.4 61 73.8
BolC1t05704H Brassica oleracea HOM05D002081 ORTHO05D002088 1.4e-15 85.9 63 68.3
ECA246G2650 Erigeron canadensis HOM05D002081 ORTHO05D002088 1.4e-15 85.9 63 74.6
Oeu029692.2 Olea europaea HOM05D002081 ORTHO05D002088 1.9e-15 85.5 61 68.9
SGA_v2.0_scaffold37G14761 Striga asiatica HOM05D002081 ORTHO05D002088 1.9e-15 85.5 61 70.5
CSS0023450 Camellia sinensis var. sinensis HOM05D002081 ORTHO05D002088 2.4e-15 85.1 61 72.1
SalBow2G0074 Salvia bowleyana HOM05D002081 ORTHO05D002088 2.4e-15 85.1 61 68.9
Sc09g0003210 Simmondsia chinensis HOM05D002081 ORTHO05D002088 2.4e-15 85.1 61 70.5
Thecc.05G304600 Theobroma cacao HOM05D002081 ORTHO05D002088 2.4e-15 85.1 61 70.5
Ah.06g189290 Amaranthus hybridus HOM05D002081 ORTHO05D002088 3.2e-15 84.7 63 66.7
Duzib106G1630 Durio zibethinus HOM05D002081 ORTHO05D002088 3.2e-15 84.7 61 72.1
Lj9C31T1 Lonicera japonica HOM05D002081 ORTHO05D002088 3.2e-15 84.7 62 72.6
AL3G15720 Arabidopsis lyrata HOM05D002081 ORTHO05D002088 7.1e-15 83.6 61 68.9
QL03p041970 Quercus lobata HOM05D002081 ORTHO05D002088 7.1e-15 83.6 61 72.1
Aa31LG5G15750 Aethionema arabicum HOM05D002081 ORTHO05D002088 9.3e-15 83.2 61 68.9
CANSAT54G1741 Cannabis sativa HOM05D002081 ORTHO05D002088 9.3e-15 83.2 61 70.5
ClCG03G016960 Citrullus lanatus HOM05D002081 ORTHO05D002088 9.3e-15 83.2 61 68.9
COL.COLO4_13480 Corchorus olitorius HOM05D002081 ORTHO05D002088 9.3e-15 83.2 61 72.1
Gohir.A13G173700 Gossypium hirsutum HOM05D002081 ORTHO05D002088 9.3e-15 83.2 61 70.5
Gohir.D13G179400 Gossypium hirsutum HOM05D002081 ORTHO05D002088 9.3e-15 83.2 61 70.5
Gorai.013G204700 Gossypium raimondii HOM05D002081 ORTHO05D002088 9.3e-15 83.2 61 70.5
Aqoxy5G00511 Aquilegia oxysepala HOM05D002081 ORTHO05D002088 1.2e-14 82.8 61 70.5
TAR365G0117 Trochodendron aralioides HOM05D002081 ORTHO05D002088 1.2e-14 82.8 61 67.2
unitig_0.g1112 Utricularia gibba HOM05D002081 ORTHO05D002088 1.2e-14 82.8 60 70.0
GSVIVG01000042001 Vitis vinifera HOM05D002081 ORTHO05D002088 1.2e-14 82.8 61 68.9
MELO3C015325.2 Cucumis melo HOM05D002081 ORTHO05D002088 1.6e-14 82.4 61 68.9
CsaV3_1G038980 Cucumis sativus L. HOM05D002081 ORTHO05D002088 1.6e-14 82.4 61 68.9
Thhalv10004745m.g Eutrema salsugineum HOM05D002081 ORTHO05D002088 1.6e-14 82.4 61 68.9
Cpa.g.sc48.41 Carica papaya HOM05D002081 ORTHO05D002088 2.1e-14 82.0 61 68.9
Rhsim05G0142500 Rhododendron simsii HOM05D002081 ORTHO05D002088 2.1e-14 82.0 58 72.4
TWI56G1185 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 2.1e-14 82.0 61 68.9
vmacro19628 Vaccinium macrocarpon HOM05D002081 ORTHO05D002088 2.1e-14 82.0 58 72.4
AT3G05280 Arabidopsis thaliana HOM05D002081 ORTHO05D002088 2.7e-14 81.6 61 67.2
Carub.0003s0453 Capsella rubella HOM05D002081 ORTHO05D002088 2.7e-14 81.6 61 67.2
CARHR079620 Cardamine hirsuta HOM05D002081 ORTHO05D002088 2.7e-14 81.6 61 67.2
Thhalv10021283m.g Eutrema salsugineum HOM05D002081 ORTHO05D002088 2.7e-14 81.6 61 67.2
Lsat_1_v5_gn_2_87721 Lactuca sativa HOM05D002081 ORTHO05D002088 3.5e-14 81.3 67 67.2
BraA03t12582Z Brassica rapa HOM05D002081 ORTHO05D002088 4.6e-14 80.9 62 64.5
HanXRQChr14g0448761 Helianthus annuus HOM05D002081 ORTHO05D002088 4.6e-14 80.9 61 65.6
Sed0004716 Sechium edule HOM05D002081 ORTHO05D002088 6.0e-14 80.5 61 67.2
Migut.I00760 Erythranthe guttata HOM05D002081 ORTHO05D002088 7.9e-14 80.1 61 65.6
Sp2g20700 Schrenkiella parvula HOM05D002081 ORTHO05D002088 7.9e-14 80.1 61 65.6
BcaB04g19274 Brassica carinata HOM05D002081 ORTHO05D002088 1.0e-13 79.7 61 65.6
Sp3g04130 Schrenkiella parvula HOM05D002081 ORTHO05D002088 1.0e-13 79.7 61 65.6
Cc02_g33510 Coffea canephora HOM05D002081 ORTHO05D002088 1.3e-13 79.3 61 65.6
Lj1g0022131 Lotus japonicus HOM05D002081 ORTHO05D002088 1.3e-13 79.3 61 65.6
Manes.09G166400 Manihot esculenta HOM05D002081 ORTHO05D002088 1.3e-13 79.3 61 67.2
Medtr7g113620 Medicago truncatula HOM05D002081 ORTHO05D002088 1.3e-13 79.3 63 68.3
Prupe.6G326800 Prunus persica HOM05D002081 ORTHO05D002088 1.3e-13 79.3 61 65.6
RcHm_v2.0_Chr3g0454661 Rosa chinensis HOM05D002081 ORTHO05D002088 1.3e-13 79.3 61 67.2
BcaB04g21452 Brassica carinata HOM05D002081 ORTHO05D002088 1.8e-13 79.0 62 67.7
Ciclev10002100m.g Citrus clementina HOM05D002081 ORTHO05D002088 1.8e-13 79.0 61 67.2
TWI12G1165 Tripterygium wilfordii HOM05D002081 ORTHO05D002088 1.8e-13 79.0 58 69.0
AT5G27490 Arabidopsis thaliana HOM05D002081 ORTHO05D002088 2.3e-13 78.6 61 65.6
A03p34080 Brassica napus HOM05D002081 ORTHO05D002088 2.3e-13 78.6 61 63.9
Lalb_Chr18g0045591 Lupinus albus HOM05D002081 ORTHO05D002088 3.0e-13 78.2 62 64.5
Hund07065 Selenicereus undatus HOM05D002081 ORTHO05D002088 3.0e-13 78.2 61 63.9
EL10Ac4g09344 Beta vulgaris HOM05D002081 ORTHO05D002088 3.9e-13 77.8 62 66.1
BcaB04g19273 Brassica carinata HOM05D002081 ORTHO05D002088 3.9e-13 77.8 58 65.5
C03p41470 Brassica napus HOM05D002081 ORTHO05D002088 3.9e-13 77.8 58 65.5
BolC3t16428H Brassica oleracea HOM05D002081 ORTHO05D002088 3.9e-13 77.8 58 65.5
AUR62036539 Chenopodium quinoa HOM05D002081 ORTHO05D002088 3.9e-13 77.8 67 64.2
FvH4_6g05750 Fragaria vesca HOM05D002081 ORTHO05D002088 3.9e-13 77.8 61 67.2
FAN02G1310 Fragaria x ananassa HOM05D002081 ORTHO05D002088 3.9e-13 77.8 61 67.2
FAN05G1483 Fragaria x ananassa HOM05D002081 ORTHO05D002088 3.9e-13 77.8 61 67.2
FAN05G4253 Fragaria x ananassa HOM05D002081 ORTHO05D002088 3.9e-13 77.8 61 67.2
FAN09G0634 Fragaria x ananassa HOM05D002081 ORTHO05D002088 3.9e-13 77.8 61 67.2
FAN14G1729 Fragaria x ananassa HOM05D002081 ORTHO05D002088 3.9e-13 77.8 61 67.2
FAN14G5292 Fragaria x ananassa HOM05D002081 ORTHO05D002088 3.9e-13 77.8 61 67.2
ECA238G2130 Erigeron canadensis HOM05D002081 ORTHO05D002088 5.1e-13 77.4 63 65.1
MD12G1220100 Malus domestica HOM05D002081 ORTHO05D002088 5.1e-13 77.4 61 63.9
BNapus_Darmor_BZH_scaffold_114p00220 Brassica napus HOM05D002081 ORTHO05D002088 6.7e-13 77.0 61 67.2
BraSC132t45514Z Brassica rapa HOM05D002081 ORTHO05D002088 6.7e-13 77.0 61 67.2
Nn1g02215 Nelumbo nucifera HOM05D002081 ORTHO05D002088 6.7e-13 77.0 61 63.9
VMungo0540G2070 Vigna mungo HOM05D002081 ORTHO05D002088 6.7e-13 77.0 61 65.6
Glyma.03G238400 Glycine max HOM05D002081 ORTHO05D002088 1.1e-12 76.3 61 63.9
Gohir.D11G274600 Gossypium hirsutum HOM05D002081 ORTHO05D002088 1.5e-12 75.9 61 65.6
Potri.013G023400 Populus trichocarpa HOM05D002081 ORTHO05D002088 1.5e-12 75.9 58 65.5
HPP92_006343 Vanilla planifolia HOM05D002081 ORTHO05D002088 1.5e-12 75.9 61 65.6
Phvul.006G092500 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 1.9e-12 75.5 61 63.9
AL6G39520 Arabidopsis lyrata HOM05D002081 ORTHO05D002088 2.5e-12 75.1 61 62.3
Gohir.A11G264400 Gossypium hirsutum HOM05D002081 ORTHO05D002088 2.5e-12 75.1 61 65.6
Gorai.007G296400 Gossypium raimondii HOM05D002081 ORTHO05D002088 2.5e-12 75.1 61 65.6
PGR031G0270 Punica granatum HOM05D002081 ORTHO05D002088 2.5e-12 75.1 61 63.9
MD04G1206000 Malus domestica HOM05D002081 ORTHO05D002088 3.3e-12 74.7 61 62.3
TPR.G33220 Trifolium pratense HOM05D002081 ORTHO05D002088 3.3e-12 74.7 63 63.5
Sabra05G0035900 Salix brachista HOM05D002081 ORTHO05D002088 4.3e-12 74.3 59 67.8
Cfa015110 Carpinus fangiana HOM05D002081 ORTHO05D002088 5.6e-12 73.9 61 63.9
Glyma.19G235900 Glycine max HOM05D002081 ORTHO05D002088 7.4e-12 73.6 61 62.3
Glyma.20G233500 Glycine max HOM05D002081 ORTHO05D002088 7.4e-12 73.6 61 63.9
Psat3g010720 Pisum sativum HOM05D002081 ORTHO05D002088 7.4e-12 73.6 58 63.8
arahy.Tifrunner.gnm1.ann1.A3AWFZ Arachis hypogaea HOM05D002081 ORTHO05D002088 1.3e-11 72.8 61 65.6
arahy.Tifrunner.gnm1.ann1.NHE1TC Arachis hypogaea HOM05D002081 ORTHO05D002088 1.3e-11 72.8 61 65.6
CDE04G1806 Ceratophyllum demersum HOM05D002081 ORTHO05D002088 1.3e-11 72.8 61 63.9
Ca_09360_v3 Cicer arietinum L. HOM05D002081 ORTHO05D002088 1.3e-11 72.8 67 59.7
Ca_09361_v3 Cicer arietinum L. HOM05D002081 ORTHO05D002088 1.3e-11 72.8 67 59.7
Nn4g26240 Nelumbo nucifera HOM05D002081 ORTHO05D002088 1.3e-11 72.8 65 60.0
PGR083G2895 Punica granatum HOM05D002081 ORTHO05D002088 1.3e-11 72.8 64 60.9
TAR362G0444 Trochodendron aralioides HOM05D002081 ORTHO05D002088 1.3e-11 72.8 61 63.9
BcaC05g30016 Brassica carinata HOM05D002081 ORTHO05D002088 1.6e-11 72.4 62 66.1
BolC5t34851H Brassica oleracea HOM05D002081 ORTHO05D002088 1.6e-11 72.4 62 66.1
PSO063G5958 Papaver somniferum HOM05D002081 ORTHO05D002088 1.6e-11 72.4 65 61.5
Phvul.007G180400 Phaseolus vulgaris HOM05D002081 ORTHO05D002088 1.6e-11 72.4 64 60.9
CDE07G0618 Ceratophyllum demersum HOM05D002081 ORTHO05D002088 2.1e-11 72.0 61 63.9
Glyma.10G154800 Glycine max HOM05D002081 ORTHO05D002088 2.1e-11 72.0 61 67.2
Atru.chr2.413 Acer truncatum HOM05D002081 ORTHO05D002088 3.7e-11 71.2 58 58.6
BraA05t23021Z Brassica rapa HOM05D002081 ORTHO05D002088 8.1e-11 70.1 63 63.5
Lalb_Chr02g0148281 Lupinus albus HOM05D002081 ORTHO05D002088 1.1e-10 69.7 63 60.3
HPP92_024134 Vanilla planifolia HOM05D002081 ORTHO05D002088 1.1e-10 69.7 61 60.7
Potri.005G033900 Populus trichocarpa HOM05D002081 ORTHO05D002088 1.4e-10 69.3 60 66.7
C05p61910 Brassica napus HOM05D002081 ORTHO05D002088 2.4e-10 68.6 62 64.5
MBI17_g13558_MAGBIO Magnolia biondii HOM05D002081 ORTHO05D002088 3.1e-10 68.2 64 62.5
SEGI_40211 Sequoiadendron giganteum HOM05D002081 ORTHO05D002088 9.0e-10 66.6 61 57.4
ATR0706G136 Amborella trichopoda HOM05D002081 ORTHO05D002088 1.5e-09 65.9 61 55.7
Haze_01563 Corylus avellana HOM05D002081 ORTHO05D002088 2.9e-08 61.6 84 46.4
PSO017G1346 Papaver somniferum HOM05D002081 ORTHO05D002088 1.1e-07 59.7 60 58.3
VMungo0720G2426 Vigna mungo HOM05D002081 ORTHO05D002088 5.5e-07 57.4 63 55.6
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 7.1e-07 57.0 51 52.9
Mapoly0005s0055 Marchantia polymorpha HOM05D002081 ORTHO05D002088 7.1e-07 57.0 60 48.3
Os01g0610500 Oryza sativa ssp. japonica HOM05D002081 ORTHO05D002088 7.1e-07 57.0 61 49.2
Zm00001eb161830 Zea mays HOM05D002081 ORTHO05D002088 7.1e-07 57.0 61 49.2
Zm00001eb358000 Zea mays HOM05D002081 ORTHO05D002088 1.6e-06 55.8 61 47.5
AUR62031135 Chenopodium quinoa HOM05D002081 ORTHO05D002088 3.5e-06 54.7 35 71.4


User provided reference genes

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