Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 0.0e+00 1390.9 759 100.0
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 0.0e+00 1168.7 760 83.7
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 0.0e+00 1162.9 760 83.9
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 0.0e+00 1162.9 760 83.9
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 0.0e+00 1162.9 759 82.2
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 0.0e+00 1142.9 760 80.7
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 0.0e+00 1142.1 761 81.3
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 0.0e+00 1138.6 758 80.3
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 0.0e+00 1137.5 760 81.1
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 0.0e+00 1137.1 760 80.9
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 0.0e+00 1136.7 760 80.8
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 0.0e+00 1132.5 757 81.0
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 0.0e+00 1130.5 760 79.5
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 0.0e+00 1126.7 760 79.9
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 0.0e+00 1124.8 758 79.9
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 0.0e+00 1124.4 760 79.9
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 0.0e+00 1124.4 760 79.7
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 0.0e+00 1119.8 760 79.1
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 0.0e+00 1118.2 760 79.6
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 0.0e+00 1117.8 758 78.8
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 0.0e+00 1117.8 760 79.6
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 0.0e+00 1115.1 760 78.6
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 0.0e+00 1114.4 760 78.7
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 0.0e+00 1114.4 833 68.2
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 0.0e+00 1111.7 762 79.0
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 0.0e+00 1110.1 760 78.2
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 0.0e+00 1108.6 760 79.1
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 0.0e+00 1105.5 760 78.4
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 0.0e+00 1096.3 747 72.2
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 0.0e+00 1091.6 761 76.7
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 0.0e+00 1089.3 740 72.8
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 0.0e+00 1087.4 757 70.4
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 0.0e+00 1085.5 760 77.1
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 0.0e+00 1082.4 740 79.7
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 0.0e+00 1081.2 757 77.0
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 0.0e+00 1080.1 760 75.8
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 0.0e+00 1078.5 760 76.8
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 0.0e+00 1077.0 761 77.0
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 0.0e+00 1075.1 760 76.6
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 5.2e-312 1074.7 768 74.5
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 2.1e-311 1072.0 760 76.7
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 2.3e-310 1068.5 761 76.5
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 2.3e-310 1068.5 761 75.7
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 4.3e-309 1064.3 776 73.6
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 1.1e-307 1059.7 760 76.3
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.4e-307 1059.3 785 73.1
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 1.8e-307 1058.9 758 67.5
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 9.1e-307 1056.6 760 76.2
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 4.5e-306 1054.3 762 75.2
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 1.0e-305 1053.1 760 74.9
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 1.6e-303 1045.8 760 75.0
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 3.6e-303 1044.6 800 74.4
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 3.0e-302 1041.6 760 75.5
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 6.7e-302 1040.4 761 75.7
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 8.8e-302 1040.0 763 73.1
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 3.7e-300 1034.6 758 72.8
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 8.2e-300 1033.5 758 72.3
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 1.1e-299 1033.1 645 85.4
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 5.3e-299 1030.8 757 73.1
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 5.3e-299 1030.8 758 73.1
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 1.2e-298 1029.6 758 72.7
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 2.9e-297 1025.0 758 71.9
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 5.0e-297 1024.2 758 71.8
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 5.0e-297 1024.2 758 71.8
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 5.0e-297 1024.2 671 83.2
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 8.5e-297 1023.5 761 74.1
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 1.1e-296 1023.1 758 71.5
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 1.1e-296 1023.1 758 71.8
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 1.9e-296 1022.3 758 71.8
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 3.2e-296 1021.5 758 72.0
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 1.4e-294 1016.1 776 74.4
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 2.3e-294 1015.4 758 71.5
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 6.7e-294 1013.8 759 71.3
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 1.5e-293 1012.7 758 71.4
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 2.6e-293 1011.9 758 71.4
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 1.4e-291 1006.1 721 76.1
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 2.0e-290 1002.3 760 73.7
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 3.5e-290 1001.5 758 70.7
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 3.5e-290 1001.5 758 71.5
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 1.3e-289 999.6 802 68.1
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 5.0e-289 997.7 761 69.4
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 4.2e-288 994.6 750 73.3
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 3.6e-287 991.5 672 81.0
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 8.0e-287 990.3 760 72.6
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 5.2e-286 987.6 817 66.3
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 6.7e-286 987.3 809 62.7
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 3.3e-285 984.9 758 73.5
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 3.5e-282 974.9 722 75.9
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 1.5e-280 969.5 777 61.8
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 6.1e-279 964.1 757 70.5
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 2.2e-276 955.7 760 70.7
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 6.3e-276 954.1 758 69.4
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 6.1e-271 937.6 672 78.4
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 3.4e-269 931.8 799 66.1
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 3.5e-266 921.8 670 74.6
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 4.3e-264 914.8 757 68.3
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 1.1e-256 890.2 755 64.8
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 4.6e-250 868.2 626 75.1
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 1.6e-247 859.8 758 62.5
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 1.4e-238 830.1 563 73.4
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 5.8e-213 745.0 571 66.7
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 3.4e-205 719.2 532 75.4
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 2.8e-199 699.5 749 54.9
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 1.4e-198 697.2 766 53.8
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 2.6e-184 649.8 771 49.7
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 1.1e-182 644.4 763 51.6
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 8.0e-178 628.2 660 53.5
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 1.0e-177 627.9 513 69.2
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 3.3e-155 553.1 442 67.4
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 8.9e-153 545.0 397 66.2
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 7.0e-150 535.4 345 78.8
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 1.2e-144 518.1 754 44.7
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 6.8e-137 492.3 340 85.6
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 4.2e-110 403.3 276 74.6
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 1.9e-102 377.9 376 56.6
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 2.4e-89 334.3 335 62.1
SalBow6G1464 Salvia bowleyana HOM05D004755 ORTHO05D006137 1.5e-75 288.5 160 83.1
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 7.7e-72 276.2 792 27.3
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 9.4e-70 269.2 338 55.9
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 2.1e-69 268.1 885 31.5
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 2.3e-68 264.6 828 26.4
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 2.6e-67 261.2 207 61.8
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 3.3e-67 260.8 146 83.6
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 2.0e-64 251.5 157 68.8
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.8e-55 220.7 124 79.0
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 3.2e-54 217.6 157 70.1
Cpa.g.sc62.109 Carica papaya HOM05D004755 ORTHO05D006137 9.8e-51 206.1 130 71.5
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 2.6e-43 181.4 136 69.9
SEGI_26304 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 4.7e-37 160.6 112 60.7
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 1.1e-33 149.4 102 77.5
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 3.2e-33 147.9 420 28.8
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 1.6e-29 135.6 90 82.2
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 1.6e-29 135.6 90 82.2
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 4.7e-29 134.0 134 60.4
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 6.1e-29 133.7 91 79.1
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 1.5e-27 129.0 90 78.9
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 5.8e-27 127.1 104 55.8
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 3.7e-26 124.4 82 76.8
Rhsim12G0078300 Rhododendron simsii HOM05D004755 ORTHO05D006137 3.2e-25 121.3 106 60.4
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 1.6e-24 119.0 85 62.4
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 8.6e-23 113.2 88 60.2
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 5.2e-20 104.0 69 81.2
CsaV3_6G026350 Cucumis sativus L. HOM05D004755 ORTHO05D006137 1.3e-18 99.4 55 80.0
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 2.9e-18 98.2 85 61.2
CARHR099950 Cardamine hirsuta HOM05D004755 ORTHO05D006137 2.1e-16 92.0 73 58.9
CAN.G572.59 Capsicum annuum HOM05D000541 ORTHO05D000137 4.6e-16 90.9 124 44.4
BcaB01g04782 Brassica carinata HOM05D004755 ORTHO05D039688 8.6e-15 86.7 90 46.7
SEGI_07035 Sequoiadendron giganteum HOM05D004755 ORTHO05D014145 1.9e-14 85.5 124 70.2
BcaB01g04780 Brassica carinata HOM05D040276 ORTHO05D039688 9.5e-14 83.2 66 54.5
TAR376G1072 Trochodendron aralioides HOM05D004755 ORTHO05D006137 2.1e-13 82.0 66 59.1
CsaV3_2G000030 Cucumis sativus L. HOM05D004755 ORTHO05D006137 3.1e-12 78.2 46 78.3
QL11p042075 Quercus lobata HOM05D004755 ORTHO05D006137 4.9e-10 70.9 50 68.0
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 1.6e-08 65.9 282 25.2
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 1.6e-08 65.9 44 75.0
Actinidia22488 Actinidia chinensis HOM05D004755 ORTHO05D056945 4.6e-08 64.3 120 38.3
Gohir.D11G213250 Gossypium hirsutum HOM05D004755 ORTHO05D036105 6.0e-08 63.9 39 84.6
Gorai.007G229200 Gossypium raimondii HOM05D004755 ORTHO05D036105 6.0e-08 63.9 39 84.6
CARHR219250 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.0e-07 63.2 61 50.8
Gohir.A11G209850 Gossypium hirsutum HOM05D004755 ORTHO05D036105 1.0e-07 63.2 39 84.6
MBI04_g36311_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 1.0e-07 63.2 254 24.0
Eucgr.B00711 Eucalyptus grandis HOM05D003769 ORTHO05D004521 6.6e-07 60.5 277 23.5
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 8.6e-07 60.1 284 24.3
Potri.015G049500 Populus trichocarpa HOM05D003769 ORTHO05D004521 8.6e-07 60.1 277 21.7
Hund10227 Selenicereus undatus HOM05D003769 ORTHO05D000105 8.6e-07 60.1 154 24.7
BcaB04g17498 Brassica carinata HOM05D003769 ORTHO05D004521 1.1e-06 59.7 145 24.8
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 1.1e-06 59.7 145 25.5
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 1.1e-06 59.7 145 25.5
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 1.1e-06 59.7 145 25.5
BraA06t23606Z Brassica rapa HOM05D003769 ORTHO05D004521 1.1e-06 59.7 145 25.5
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 1.9e-06 58.9 145 24.8
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 1.9e-06 58.9 145 24.1
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 2.5e-06 58.5 257 23.7
Cpa.g.sc13.18 Carica papaya HOM05D003769 ORTHO05D004521 2.5e-06 58.5 282 22.7
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 3.3e-06 58.2 145 23.4
AT1G49040 Arabidopsis thaliana HOM05D003769 ORTHO05D004521 3.3e-06 58.2 145 23.4
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 3.3e-06 58.2 257 23.0
Manes.01G013600 Manihot esculenta HOM05D003769 ORTHO05D004521 3.3e-06 58.2 258 22.9
AUR62029853 Chenopodium quinoa HOM05D003769 ORTHO05D004521 4.3e-06 57.8 258 24.8
Sc10g0004650 Simmondsia chinensis HOM05D005508 ORTHO05D006882 5.6e-06 57.4 154 27.3
TPR.G17575 Trifolium pratense HOM05D001335 ORTHO05D001184 5.6e-06 57.4 110 30.0
ATR0322G035 Amborella trichopoda HOM05D003769 ORTHO05D004521 7.3e-06 57.0 276 23.6
CAN.G438.128 Capsicum annuum HOM05D003769 ORTHO05D004521 7.3e-06 57.0 280 22.9
Mapoly0058s0028 Marchantia polymorpha HOM05D003769 ORTHO05D004521 7.3e-06 57.0 259 27.4
GSVIVG01008260001 Vitis vinifera HOM05D003769 ORTHO05D004521 7.3e-06 57.0 257 22.6
Psat4g151480 Pisum sativum HOM05D001335 ORTHO05D001184 9.6e-06 56.6 136 28.7
SalBow5G5336 Salvia bowleyana HOM05D005508 ORTHO05D006882 9.6e-06 56.6 160 28.8


User provided reference genes

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