Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A195T78 Lonicera japonica HOM05D003534 ORTHO05D004911 1.1e-224 783.1 416 100.0
Lj4C693T2 Lonicera japonica HOM05D003534 ORTHO05D004911 5.9e-151 538.1 389 78.1
Dinv23505 Davidia involucrata HOM05D003534 ORTHO05D004911 1.7e-118 430.3 407 61.4
CiPaw.05G066400 Carya illinoinensis HOM05D003534 ORTHO05D004911 1.3e-110 404.1 397 61.7
Oeu011084.1 Olea europaea HOM05D003534 ORTHO05D004911 1.9e-109 400.2 401 59.9
DCAR_001567 Daucus carota HOM05D003534 ORTHO05D004911 2.1e-108 396.7 374 61.2
Actinidia00534 Actinidia chinensis HOM05D003534 ORTHO05D004911 4.5e-106 389.0 408 58.8
QL11p044502 Quercus lobata HOM05D003534 ORTHO05D004911 9.9e-106 387.9 401 59.9
Rhsim11G0178800 Rhododendron simsii HOM05D003534 ORTHO05D004911 2.9e-105 386.3 410 59.0
Cc02_g17370 Coffea canephora HOM05D003534 ORTHO05D004911 3.8e-105 386.0 400 59.0
TAR376G0939 Trochodendron aralioides HOM05D003534 ORTHO05D004911 4.2e-104 382.5 381 59.6
PGR142G3854 Punica granatum HOM05D003534 ORTHO05D004911 7.1e-104 381.7 394 58.4
vmacro02092 Vaccinium macrocarpon HOM05D003534 ORTHO05D004911 2.7e-103 379.8 410 59.3
Eucgr.I01280 Eucalyptus grandis HOM05D003534 ORTHO05D004911 3.5e-103 379.4 394 59.4
Cpa.g.sc62.164 Carica papaya HOM05D003534 ORTHO05D004911 1.0e-102 377.9 379 62.3
CSS0034094 Camellia sinensis var. sinensis HOM05D003534 ORTHO05D004911 1.8e-102 377.1 393 58.8
TWI79G0037 Tripterygium wilfordii HOM05D003534 ORTHO05D004911 1.9e-101 373.6 406 57.4
Glyma.12G042600 Glycine max HOM05D003534 ORTHO05D004911 2.5e-101 373.2 400 57.2
ECA234G0458 Erigeron canadensis HOM05D003534 ORTHO05D004911 3.3e-101 372.9 397 58.4
Glyma.11G116800 Glycine max HOM05D003534 ORTHO05D004911 4.3e-101 372.5 398 56.3
Hma1.2p1_0617F.1_g190140 Hydrangea macrophylla HOM05D003534 ORTHO05D004911 7.4e-101 371.7 438 53.2
Prupe.8G094400 Prunus persica HOM05D003534 ORTHO05D004911 2.8e-100 369.8 406 56.7
SGA_v2.0_scaffold58G20518 Striga asiatica HOM05D003534 ORTHO05D004911 1.4e-99 367.5 404 54.5
VMungo1127G1107 Vigna mungo HOM05D003534 ORTHO05D004911 1.4e-99 367.5 400 56.0
CANSAT01G2206 Cannabis sativa HOM05D003534 ORTHO05D004911 1.8e-99 367.1 397 56.7
Cfa004983 Carpinus fangiana HOM05D003534 ORTHO05D004911 1.2e-98 364.4 397 56.9
SalBow3G2606 Salvia bowleyana HOM05D003534 ORTHO05D004911 1.3e-97 360.9 392 56.4
Ciclev10027844m.g Citrus clementina HOM05D003534 ORTHO05D004911 2.9e-97 359.8 401 55.1
Lalb_Chr01g0002481 Lupinus albus HOM05D003534 ORTHO05D004911 1.1e-96 357.8 410 55.1
MBI16_g05475_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D004911 1.1e-96 357.8 394 55.8
MD10G1073000 Malus domestica HOM05D003534 ORTHO05D004911 1.9e-96 357.1 416 53.6
FAN15G3506 Fragaria x ananassa HOM05D003534 ORTHO05D004911 5.5e-96 355.5 408 55.6
FvH4_2g09160 Fragaria vesca HOM05D003534 ORTHO05D004911 2.1e-95 353.6 408 55.1
Lalb_Chr03g0025601 Lupinus albus HOM05D003534 ORTHO05D004911 2.7e-95 353.2 411 54.5
FAN20G2815 Fragaria x ananassa HOM05D003534 ORTHO05D004911 3.5e-95 352.8 408 55.4
FAN24G0084 Fragaria x ananassa HOM05D003534 ORTHO05D004911 3.5e-95 352.8 408 55.1
FAN27G1894 Fragaria x ananassa HOM05D003534 ORTHO05D004911 4.6e-95 352.4 408 55.1
TPR.G22546 Trifolium pratense HOM05D003534 ORTHO05D004911 6.0e-95 352.1 429 53.4
Ca_20885_v3 Cicer arietinum L. HOM05D003534 ORTHO05D004911 1.0e-94 351.3 397 54.7
RcHm_v2.0_Chr6g0265021 Rosa chinensis HOM05D003534 ORTHO05D004911 1.8e-94 350.5 408 55.6
Medtr4g078640 Medicago truncatula HOM05D003534 ORTHO05D004911 3.9e-94 349.4 419 55.1
Phvul.011G044300 Phaseolus vulgaris HOM05D003534 ORTHO05D004911 5.1e-94 349.0 400 54.0
Lj3g0020150 Lotus japonicus HOM05D003534 ORTHO05D004911 8.7e-94 348.2 381 56.4
Manes.04G089300 Manihot esculenta HOM05D003534 ORTHO05D004911 8.7e-94 348.2 394 56.6
Gohir.D02G216500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 1.1e-93 347.8 420 55.0
Gohir.A03G195500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 5.6e-93 345.5 420 54.3
Gorai.005G244600 Gossypium raimondii HOM05D003534 ORTHO05D004911 5.6e-93 345.5 420 54.5
Potri.009G118400 Populus trichocarpa HOM05D003534 ORTHO05D004911 1.6e-92 344.0 382 57.6
Thecc.02G083000 Theobroma cacao HOM05D003534 ORTHO05D004911 1.6e-92 344.0 414 54.8
MELO3C023306.2 Cucumis melo HOM05D003534 ORTHO05D004911 3.7e-92 342.8 402 53.2
Nn8g40768 Nelumbo nucifera HOM05D003534 ORTHO05D004911 1.4e-91 340.9 377 55.2
Sed0008343 Sechium edule HOM05D003534 ORTHO05D004911 1.8e-91 340.5 401 52.9
Nn3g20273 Nelumbo nucifera HOM05D003534 ORTHO05D004911 2.4e-91 340.1 380 55.0
MD05G1064300 Malus domestica HOM05D003534 ORTHO05D004911 3.4e-90 336.3 412 52.4
CsaV3_2G014840 Cucumis sativus L. HOM05D003534 ORTHO05D004911 1.0e-89 334.7 401 51.9
Migut.N01247 Erythranthe guttata HOM05D003534 ORTHO05D004911 1.7e-89 334.0 390 51.8
ClCG11G004310 Citrullus lanatus HOM05D003534 ORTHO05D004911 1.1e-88 331.3 429 49.2
Nitab4.5_0000167g0310 Nicotiana tabacum HOM05D003534 ORTHO05D004911 3.2e-88 329.7 403 51.6
Peaxi162Scf00391g00525 Petunia axillaris HOM05D003534 ORTHO05D004911 9.3e-88 328.2 405 52.1
Aa31sc389G50 Aethionema arabicum HOM05D003534 ORTHO05D004911 1.0e-86 324.7 400 52.0
Sabra09G0090700 Salix brachista HOM05D003534 ORTHO05D004911 2.3e-86 323.6 405 54.1
Psat7g184360 Pisum sativum HOM05D003534 ORTHO05D004911 2.1e-84 317.0 382 53.4
GSVIVG01023801001 Vitis vinifera HOM05D003534 ORTHO05D004911 6.3e-84 315.5 314 62.1
Aqoxy3G00729 Aquilegia oxysepala HOM05D003534 ORTHO05D004911 8.2e-84 315.1 404 50.0
PSO675G2831 Papaver somniferum HOM05D003534 ORTHO05D004911 8.2e-84 315.1 381 53.5
PSO541G3604 Papaver somniferum HOM05D003534 ORTHO05D004911 6.9e-83 312.0 379 53.0
arahy.Tifrunner.gnm1.ann1.32LR34 Arachis hypogaea HOM05D003534 ORTHO05D004911 9.0e-83 311.6 399 51.1
HanXRQChr12g0376181 Helianthus annuus HOM05D003534 ORTHO05D004911 1.2e-82 311.2 397 50.1
Medtr4g070380 Medicago truncatula HOM05D003534 ORTHO05D004911 1.7e-81 307.4 374 54.0
arahy.Tifrunner.gnm1.ann1.HU7T3D Arachis hypogaea HOM05D003534 ORTHO05D004911 2.1e-79 300.4 426 48.4
THA.LOC104807735 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 1.0e-78 298.1 400 49.0
ATR0568G003 Amborella trichopoda HOM05D003534 ORTHO05D004911 1.8e-78 297.4 402 51.0
CDE08G0557 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 1.8e-78 297.4 390 48.2
Sopen11g010770 Solanum pennellii HOM05D003534 ORTHO05D004911 3.0e-78 296.6 410 49.3
MSTRG.27693 Avicennia marina HOM05D003534 ORTHO05D004911 3.9e-78 296.2 402 50.2
Sc22g0003200 Simmondsia chinensis HOM05D003534 ORTHO05D004911 6.7e-78 295.4 376 51.1
Nitab4.5_0003010g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 2.5e-77 293.5 405 47.9
Solyc11g020810.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 7.4e-77 292.0 410 48.5
C07p54510 Brassica napus HOM05D003534 ORTHO05D004911 9.7e-77 291.6 396 48.5
AL6G48970 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 1.6e-76 290.8 395 49.1
CAN.G259.5 Capsicum annuum HOM05D003534 ORTHO05D004911 2.8e-76 290.0 405 48.4
PSO675G9373 Papaver somniferum HOM05D003534 ORTHO05D004911 6.3e-76 288.9 367 49.0
BraA03t14692Z Brassica rapa HOM05D003534 ORTHO05D004911 2.4e-75 287.0 395 48.9
Nitab4.5_0006725g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 2.4e-75 287.0 389 49.9
A03p56220 Brassica napus HOM05D003534 ORTHO05D004911 4.1e-75 286.2 395 48.4
SEGI_39659 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 4.1e-75 286.2 408 46.8
Cpa.g.c31087 Carica papaya HOM05D003534 ORTHO05D004911 5.3e-75 285.8 237 70.5
AT4G25730 Arabidopsis thaliana HOM05D003534 ORTHO05D004911 2.0e-74 283.9 401 46.9
Solyc11g020820.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 3.4e-74 283.1 406 47.8
Carub.0007s1523 Capsella rubella HOM05D003534 ORTHO05D004911 4.5e-74 282.7 408 47.3
unitig_21.g20784 Utricularia gibba HOM05D003534 ORTHO05D004911 1.3e-73 281.2 384 48.4
BolC7t45937H Brassica oleracea HOM05D003534 ORTHO05D004911 1.7e-73 280.8 392 47.2
SEGI_04005 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 2.2e-73 280.4 408 45.8
CARHR233180 Cardamine hirsuta HOM05D003534 ORTHO05D004911 3.8e-73 279.6 357 48.5
Nitab4.5_0000231g0480 Nicotiana tabacum HOM05D003534 ORTHO05D004911 6.5e-73 278.9 370 48.9
Nitab4.5_0007066g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 3.2e-72 276.6 382 48.7
PGSC0003DMG400009279 Solanum tuberosum HOM05D003534 ORTHO05D004911 3.2e-72 276.6 408 47.8
Thhalv10024417m.g Eutrema salsugineum HOM05D003534 ORTHO05D004911 7.2e-72 275.4 400 48.0
BcaC06g32787 Brassica carinata HOM05D003534 ORTHO05D004911 1.0e-70 271.6 394 46.7
EL10Ac2g03296 Beta vulgaris HOM05D003534 ORTHO05D004911 1.4e-70 271.2 412 46.6
AL7G27310 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 5.1e-70 269.2 401 46.6
Peaxi162Scf00314g00224 Petunia axillaris HOM05D003534 ORTHO05D004911 1.1e-69 268.1 406 45.3
Sopen11g010760 Solanum pennellii HOM05D003534 ORTHO05D004911 1.1e-69 268.1 404 46.0
CANSAT35G1090 Cannabis sativa HOM05D003534 ORTHO05D004911 1.4e-67 261.2 398 47.2
BcaC07g38209 Brassica carinata HOM05D003534 ORTHO05D004911 1.8e-67 260.8 365 49.9
BolC8t48630H Brassica oleracea HOM05D003534 ORTHO05D004911 1.8e-67 260.8 365 49.9
PGSC0003DMG400031553 Solanum tuberosum HOM05D003534 ORTHO05D004911 1.8e-67 260.8 398 45.7
Sopen10g016730 Solanum pennellii HOM05D003534 ORTHO05D004911 4.5e-66 256.1 398 45.5
Hund20114 Selenicereus undatus HOM05D003534 ORTHO05D004911 7.7e-66 255.4 376 46.3
Oeu029149.3 Olea europaea HOM05D003534 ORTHO05D004911 1.3e-65 254.6 376 48.7
PGSC0003DMG400020972 Solanum tuberosum HOM05D003534 ORTHO05D004911 1.1e-64 251.5 400 44.2
HPP92_017536 Vanilla planifolia HOM05D003534 ORTHO05D004911 1.1e-64 251.5 392 44.4
C08p09620 Brassica napus HOM05D003534 ORTHO05D004911 5.5e-64 249.2 365 48.8
Sopen10g016790 Solanum pennellii HOM05D003534 ORTHO05D004911 5.5e-64 249.2 398 45.0
Lsat_1_v5_gn_5_119261 Lactuca sativa HOM05D003534 ORTHO05D004911 1.6e-63 247.7 243 60.9
COL.COLO4_25956 Corchorus olitorius HOM05D003534 ORTHO05D004911 3.6e-63 246.5 249 59.0
Solyc10g046930.3 Solanum lycopersicum HOM05D003534 ORTHO05D004911 3.6e-63 246.5 398 45.5
Os05g0567400 Oryza sativa ssp. japonica HOM05D003534 ORTHO05D004911 1.5e-61 241.1 401 44.4
BraA08t34053Z Brassica rapa HOM05D003534 ORTHO05D004911 9.7e-61 238.4 383 45.2
BcaB05g23691 Brassica carinata HOM05D003534 ORTHO05D004911 6.3e-60 235.7 420 43.3
ATR0579G045 Amborella trichopoda HOM05D003534 ORTHO05D004911 1.4e-59 234.6 250 55.6
AUR62038347 Chenopodium quinoa HOM05D003534 ORTHO05D004911 1.4e-59 234.6 381 43.6
A08p21010 Brassica napus HOM05D003534 ORTHO05D004911 4.5e-58 229.6 372 44.6
THA.LOC104804130 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 1.0e-57 228.4 430 40.7
Sp7g23760 Schrenkiella parvula HOM05D003534 ORTHO05D004911 1.6e-55 221.1 371 43.4
Zm00001eb343980 Zea mays HOM05D003534 ORTHO05D004911 4.0e-54 216.5 332 44.3
AagrBONN_evm.TU.Sc2ySwM_228.187 Anthoceros agrestis HOM05D003534 ORTHO05D004911 6.7e-54 215.7 353 43.1
Haze_02400 Corylus avellana HOM05D003534 ORTHO05D004911 8.8e-54 215.3 270 52.2
CDE06G2567 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 8.2e-52 208.8 308 45.5
Atru.chr5.3044 Acer truncatum HOM05D003534 ORTHO05D004911 1.4e-51 208.0 180 65.6
Zm00001eb296160 Zea mays HOM05D003534 ORTHO05D004911 3.6e-47 193.4 374 39.6
Mapoly0151s0007 Marchantia polymorpha HOM05D003534 ORTHO05D004911 5.2e-46 189.5 398 38.2
Duzib132G0318 Durio zibethinus HOM05D003534 ORTHO05D004911 2.0e-45 187.6 437 36.6
SMO361G0029 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.7e-44 184.5 393 36.6
SMO361G0155 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 2.3e-41 174.1 397 36.0
SMO361G0409 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 2.3e-41 174.1 397 36.0
SEGI_39025 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 3.8e-41 173.3 165 56.4
Oeu029134.1 Olea europaea HOM05D003534 ORTHO05D004911 2.5e-40 170.6 141 64.5
AUR62037043 Chenopodium quinoa HOM05D003534 ORTHO05D004911 4.0e-38 163.3 381 36.7
Oeu029132.1 Olea europaea HOM05D003534 ORTHO05D004911 8.8e-38 162.2 234 47.0
Pp3c2_28180 Physcomitrium patens HOM05D003534 ORTHO05D004911 1.5e-37 161.4 329 37.7
Pp3c2_28182 Physcomitrium patens HOM05D003534 ORTHO05D004911 1.5e-37 161.4 329 37.7
Carub.0006s3329 Capsella rubella HOM05D003534 ORTHO05D004911 1.7e-36 157.9 392 33.9
CDE06G1392 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 6.3e-36 156.0 146 57.5
AUR62041501 Chenopodium quinoa HOM05D003534 ORTHO05D004911 5.9e-34 149.4 369 36.3
Atru.chr5.3043 Acer truncatum HOM05D003534 ORTHO05D004911 8.6e-33 145.6 191 48.7
CBR_g6403 Chara braunii HOM05D003534 ORTHO05D004911 1.4e-27 128.3 448 31.0
SMO361G0744 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.8e-22 111.3 315 34.0
CANSAT21G0339 Cannabis sativa HOM05D003534 ORTHO05D004911 1.2e-21 108.6 104 60.6
Ah.11g039060 Amaranthus hybridus HOM05D003534 ORTHO05D004911 2.0e-21 107.8 180 40.6
CAN.G616.16 Capsicum annuum HOM05D003534 ORTHO05D004911 3.6e-15 87.0 226 35.8
COL.COLO4_25955 Corchorus olitorius HOM05D003534 ORTHO05D015840 4.4e-13 80.1 188 37.8
PSO675G6670 Papaver somniferum HOM05D003534 ORTHO05D304647 1.7e-12 78.2 257 31.9
ClCG11G000160 Citrullus lanatus HOM05D001035 ORTHO05D001045 3.7e-12 77.0 112 47.3
PSO170G1266 Papaver somniferum HOM05D034905 ORTHO05D004911 2.1e-10 71.2 99 41.4
PSO170G1701 Papaver somniferum HOM05D003534 ORTHO05D004911 2.1e-10 71.2 99 41.4
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 2.7e-10 70.9 103 46.6
ATR0579G090 Amborella trichopoda HOM05D003534 ORTHO05D004911 1.7e-09 68.2 128 43.8
PRCOL_00001513 Prasinoderma coloniale HOM05D003534 ORTHO05D004911 1.9e-08 64.7 415 27.2
PSO478G1590 Papaver somniferum HOM05D000040 ORTHO05D000267 8.1e-07 59.3 80 38.8
SMO361G0680 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.4e-06 58.5 38 63.2
HanXRQChr16g0507701 Helianthus annuus HOM05D003534 ORTHO05D004911 6.8e-06 56.2 37 59.5


User provided reference genes

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