Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A195T77 Lonicera japonica HOM05D003534 ORTHO05D011045 1.1e-101 373.2 186 100.0
Lj4C693T2 Lonicera japonica HOM05D003534 ORTHO05D004911 6.8e-30 134.8 68 95.6
Nitab4.5_0006725g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 2.8e-28 129.4 68 91.2
SalBow3G2606 Salvia bowleyana HOM05D003534 ORTHO05D004911 8.3e-28 127.9 68 89.7
MSTRG.27693 Avicennia marina HOM05D003534 ORTHO05D004911 1.4e-27 127.1 68 89.7
Dinv23505 Davidia involucrata HOM05D003534 ORTHO05D004911 1.4e-27 127.1 68 88.2
Peaxi162Scf00391g00525 Petunia axillaris HOM05D003534 ORTHO05D004911 1.4e-27 127.1 68 89.7
vmacro02092 Vaccinium macrocarpon HOM05D003534 ORTHO05D004911 1.4e-27 127.1 68 88.2
Nitab4.5_0000167g0310 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.8e-27 126.7 68 88.2
Nitab4.5_0000231g0480 Nicotiana tabacum HOM05D003534 ORTHO05D004911 2.4e-27 126.3 68 88.2
SGA_v2.0_scaffold58G20518 Striga asiatica HOM05D003534 ORTHO05D004911 2.4e-27 126.3 68 88.2
Rhsim11G0178800 Rhododendron simsii HOM05D003534 ORTHO05D004911 4.1e-27 125.6 68 86.8
Solyc10g046930.3 Solanum lycopersicum HOM05D003534 ORTHO05D004911 4.1e-27 125.6 68 89.7
Sopen10g016730 Solanum pennellii HOM05D003534 ORTHO05D004911 4.1e-27 125.6 68 89.7
Sopen10g016790 Solanum pennellii HOM05D003534 ORTHO05D004911 4.1e-27 125.6 68 89.7
unitig_21.g20784 Utricularia gibba HOM05D003534 ORTHO05D004911 7.0e-27 124.8 68 88.2
CSS0034094 Camellia sinensis var. sinensis HOM05D003534 ORTHO05D004911 9.1e-27 124.4 68 85.3
CAN.G259.5 Capsicum annuum HOM05D003534 ORTHO05D004911 9.1e-27 124.4 68 88.2
Solyc11g020810.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 9.1e-27 124.4 68 86.8
PGSC0003DMG400020972 Solanum tuberosum HOM05D003534 ORTHO05D004911 9.1e-27 124.4 68 88.2
Cc02_g17370 Coffea canephora HOM05D003534 ORTHO05D004911 1.2e-26 124.0 68 86.8
DCAR_001567 Daucus carota HOM05D003534 ORTHO05D004911 1.2e-26 124.0 68 86.8
Nitab4.5_0003010g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.2e-26 124.0 68 85.3
Oeu011084.1 Olea europaea HOM05D003534 ORTHO05D004911 1.2e-26 124.0 67 88.1
Hma1.2p1_0617F.1_g190140 Hydrangea macrophylla HOM05D003534 ORTHO05D004911 2.0e-26 123.2 68 86.8
Sopen11g010770 Solanum pennellii HOM05D003534 ORTHO05D004911 2.0e-26 123.2 68 86.8
Actinidia00534 Actinidia chinensis HOM05D003534 ORTHO05D004911 4.5e-26 122.1 68 85.3
Peaxi162Scf00314g00224 Petunia axillaris HOM05D003534 ORTHO05D004911 4.5e-26 122.1 68 85.3
PGSC0003DMG400009279 Solanum tuberosum HOM05D003534 ORTHO05D004911 4.5e-26 122.1 68 85.3
PGSC0003DMG400031553 Solanum tuberosum HOM05D003534 ORTHO05D004911 7.7e-26 121.3 68 86.8
Migut.N01247 Erythranthe guttata HOM05D003534 ORTHO05D004911 3.8e-25 119.0 68 80.9
Nitab4.5_0007066g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 5.0e-25 118.6 68 83.8
Cpa.g.c31087 Carica papaya HOM05D003534 ORTHO05D004911 1.5e-24 117.1 69 85.5
Cpa.g.sc62.164 Carica papaya HOM05D003534 ORTHO05D004911 1.5e-24 117.1 69 85.5
GSVIVG01023801001 Vitis vinifera HOM05D003534 ORTHO05D004911 1.5e-24 117.1 68 83.8
Cfa004983 Carpinus fangiana HOM05D003534 ORTHO05D004911 1.9e-24 116.7 69 85.5
Solyc11g020820.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 2.5e-24 116.3 68 82.4
TWI79G0037 Tripterygium wilfordii HOM05D003534 ORTHO05D004911 2.5e-24 116.3 69 85.5
Sed0008343 Sechium edule HOM05D003534 ORTHO05D004911 3.3e-24 115.9 69 84.1
CiPaw.05G066400 Carya illinoinensis HOM05D003534 ORTHO05D004911 4.2e-24 115.5 69 84.1
ClCG11G004310 Citrullus lanatus HOM05D003534 ORTHO05D004911 4.2e-24 115.5 69 82.6
MELO3C023306.2 Cucumis melo HOM05D003534 ORTHO05D004911 4.2e-24 115.5 69 82.6
Potri.009G118400 Populus trichocarpa HOM05D003534 ORTHO05D004911 5.5e-24 115.2 69 82.6
CDE06G1392 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 7.2e-24 114.8 113 58.4
CDE08G0557 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 7.2e-24 114.8 113 58.4
Lalb_Chr03g0025601 Lupinus albus HOM05D003534 ORTHO05D004911 7.2e-24 114.8 69 84.1
QL11p044502 Quercus lobata HOM05D003534 ORTHO05D004911 9.5e-24 114.4 69 82.6
Sabra09G0090700 Salix brachista HOM05D003534 ORTHO05D004911 9.5e-24 114.4 69 82.6
MBI16_g05475_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D004911 1.2e-23 114.0 68 79.4
Mapoly0151s0007 Marchantia polymorpha HOM05D003534 ORTHO05D004911 1.6e-23 113.6 68 77.9
PGR142G3854 Punica granatum HOM05D003534 ORTHO05D004911 1.6e-23 113.6 69 82.6
CsaV3_2G014840 Cucumis sativus L. HOM05D003534 ORTHO05D004911 2.1e-23 113.2 69 82.6
Eucgr.I01280 Eucalyptus grandis HOM05D003534 ORTHO05D004911 2.1e-23 113.2 69 82.6
Oeu029149.3 Olea europaea HOM05D003534 ORTHO05D004911 2.8e-23 112.8 72 79.2
Lalb_Chr01g0002481 Lupinus albus HOM05D003534 ORTHO05D004911 3.6e-23 112.5 69 82.6
Manes.04G089300 Manihot esculenta HOM05D003534 ORTHO05D004911 3.6e-23 112.5 69 79.7
Sopen11g010760 Solanum pennellii HOM05D003534 ORTHO05D004911 3.6e-23 112.5 68 79.4
TAR376G0939 Trochodendron aralioides HOM05D003534 ORTHO05D004911 4.7e-23 112.1 68 79.4
Phvul.011G044300 Phaseolus vulgaris HOM05D003534 ORTHO05D004911 8.0e-23 111.3 69 81.2
VMungo1127G1107 Vigna mungo HOM05D003534 ORTHO05D004911 8.0e-23 111.3 69 81.2
Glyma.11G116800 Glycine max HOM05D003534 ORTHO05D004911 1.0e-22 110.9 69 81.2
Gohir.D02G216500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 1.0e-22 110.9 69 79.7
Gorai.005G244600 Gossypium raimondii HOM05D003534 ORTHO05D004911 1.0e-22 110.9 69 79.7
Thecc.02G083000 Theobroma cacao HOM05D003534 ORTHO05D004911 1.0e-22 110.9 69 79.7
ATR0579G045 Amborella trichopoda HOM05D003534 ORTHO05D004911 1.4e-22 110.5 101 60.4
Duzib132G0318 Durio zibethinus HOM05D003534 ORTHO05D004911 1.8e-22 110.2 69 79.7
Ca_20885_v3 Cicer arietinum L. HOM05D003534 ORTHO05D004911 2.3e-22 109.8 69 78.3
Glyma.12G042600 Glycine max HOM05D003534 ORTHO05D004911 2.3e-22 109.8 69 81.2
Gohir.A03G195500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 2.3e-22 109.8 69 78.3
Lj3g0020150 Lotus japonicus HOM05D003534 ORTHO05D004911 2.3e-22 109.8 69 79.7
Nn8g40768 Nelumbo nucifera HOM05D003534 ORTHO05D004911 2.3e-22 109.8 101 62.4
Psat7g184360 Pisum sativum HOM05D003534 ORTHO05D004911 2.3e-22 109.8 69 76.8
Hund20114 Selenicereus undatus HOM05D003534 ORTHO05D004911 3.0e-22 109.4 68 75.0
EL10Ac2g03296 Beta vulgaris HOM05D003534 ORTHO05D004911 5.2e-22 108.6 84 67.9
Nn3g20273 Nelumbo nucifera HOM05D003534 ORTHO05D004911 5.2e-22 108.6 101 62.4
Sc22g0003200 Simmondsia chinensis HOM05D003534 ORTHO05D004911 5.2e-22 108.6 69 76.8
ATR0568G003 Amborella trichopoda HOM05D003534 ORTHO05D004911 6.8e-22 108.2 101 60.4
ECA234G0458 Erigeron canadensis HOM05D003534 ORTHO05D004911 6.8e-22 108.2 68 77.9
Prupe.8G094400 Prunus persica HOM05D003534 ORTHO05D004911 6.8e-22 108.2 68 76.5
Aqoxy3G00729 Aquilegia oxysepala HOM05D003534 ORTHO05D004911 8.9e-22 107.8 101 61.4
MD05G1064300 Malus domestica HOM05D003534 ORTHO05D004911 8.9e-22 107.8 113 54.0
MD10G1073000 Malus domestica HOM05D003534 ORTHO05D004911 8.9e-22 107.8 101 59.4
SEGI_39025 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 8.9e-22 107.8 68 76.5
SEGI_39659 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 8.9e-22 107.8 68 76.5
THA.LOC104807735 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 1.2e-21 107.5 68 77.9
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 1.5e-21 107.1 68 76.5
SEGI_04005 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 2.0e-21 106.7 68 75.0
CANSAT01G2206 Cannabis sativa HOM05D003534 ORTHO05D004911 2.6e-21 106.3 69 75.4
RcHm_v2.0_Chr6g0265021 Rosa chinensis HOM05D003534 ORTHO05D004911 2.6e-21 106.3 68 76.5
FvH4_2g09160 Fragaria vesca HOM05D003534 ORTHO05D004911 3.4e-21 105.9 68 75.0
FAN15G3506 Fragaria x ananassa HOM05D003534 ORTHO05D004911 3.4e-21 105.9 68 75.0
FAN20G2815 Fragaria x ananassa HOM05D003534 ORTHO05D004911 3.4e-21 105.9 68 75.0
FAN24G0084 Fragaria x ananassa HOM05D003534 ORTHO05D004911 3.4e-21 105.9 68 75.0
FAN27G1894 Fragaria x ananassa HOM05D003534 ORTHO05D004911 3.4e-21 105.9 68 75.0
arahy.Tifrunner.gnm1.ann1.32LR34 Arachis hypogaea HOM05D003534 ORTHO05D004911 4.4e-21 105.5 69 76.8
arahy.Tifrunner.gnm1.ann1.HU7T3D Arachis hypogaea HOM05D003534 ORTHO05D004911 4.4e-21 105.5 69 76.8
THA.LOC104804130 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 7.5e-21 104.8 69 78.3
HPP92_017536 Vanilla planifolia HOM05D003534 ORTHO05D004911 1.3e-20 104.0 68 75.0
AUR62037043 Chenopodium quinoa HOM05D003534 ORTHO05D004911 6.3e-20 101.7 68 75.0
Aa31sc389G50 Aethionema arabicum HOM05D003534 ORTHO05D004911 1.4e-19 100.5 69 73.9
HanXRQChr12g0376181 Helianthus annuus HOM05D003534 ORTHO05D004911 1.4e-19 100.5 120 47.5
AagrBONN_evm.TU.Sc2ySwM_228.187 Anthoceros agrestis HOM05D003534 ORTHO05D004911 2.4e-19 99.8 68 72.1
AUR62041501 Chenopodium quinoa HOM05D003534 ORTHO05D004911 2.4e-19 99.8 83 63.9
Lsat_1_v5_gn_5_119261 Lactuca sativa HOM05D003534 ORTHO05D004911 4.1e-19 99.0 68 73.5
Ah.11g039060 Amaranthus hybridus HOM05D003534 ORTHO05D004911 7.0e-19 98.2 129 50.4
AUR62038347 Chenopodium quinoa HOM05D003534 ORTHO05D004911 7.0e-19 98.2 83 62.7
Medtr4g078640 Medicago truncatula HOM05D003534 ORTHO05D004911 1.2e-18 97.4 69 68.1
AL7G27310 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 1.6e-18 97.1 69 71.0
AT4G25730 Arabidopsis thaliana HOM05D003534 ORTHO05D004911 1.6e-18 97.1 69 71.0
A03p56220 Brassica napus HOM05D003534 ORTHO05D004911 1.6e-18 97.1 69 71.0
BraA03t14692Z Brassica rapa HOM05D003534 ORTHO05D004911 1.6e-18 97.1 69 71.0
Pp3c2_28180 Physcomitrium patens HOM05D003534 ORTHO05D004911 2.0e-18 96.7 68 69.1
Pp3c2_28182 Physcomitrium patens HOM05D003534 ORTHO05D004911 2.0e-18 96.7 68 69.1
TPR.G22546 Trifolium pratense HOM05D003534 ORTHO05D004911 2.0e-18 96.7 70 70.0
C07p54510 Brassica napus HOM05D003534 ORTHO05D004911 2.7e-18 96.3 69 71.0
BolC7t45937H Brassica oleracea HOM05D003534 ORTHO05D004911 2.7e-18 96.3 69 71.0
Carub.0007s1523 Capsella rubella HOM05D003534 ORTHO05D004911 1.0e-17 94.4 69 69.6
Sp7g23760 Schrenkiella parvula HOM05D003534 ORTHO05D004911 1.0e-17 94.4 69 69.6
BraA08t34053Z Brassica rapa HOM05D003534 ORTHO05D004911 2.3e-17 93.2 75 64.0
A08p21010 Brassica napus HOM05D003534 ORTHO05D004911 2.9e-17 92.8 69 68.1
Thhalv10024417m.g Eutrema salsugineum HOM05D003534 ORTHO05D004911 3.9e-17 92.4 69 68.1
Atru.chr5.3044 Acer truncatum HOM05D003534 ORTHO05D004911 5.0e-17 92.0 54 83.3
SMO361G0155 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 8.6e-17 91.3 68 64.7
SMO361G0409 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 8.6e-17 91.3 68 64.7
CAN.G616.16 Capsicum annuum HOM05D003534 ORTHO05D004911 1.5e-16 90.5 54 81.5
Os05g0567400 Oryza sativa ssp. japonica HOM05D003534 ORTHO05D004911 4.3e-16 89.0 68 64.7
BcaC07g38209 Brassica carinata HOM05D003534 ORTHO05D004911 5.6e-16 88.6 69 65.2
C08p09620 Brassica napus HOM05D003534 ORTHO05D004911 5.6e-16 88.6 69 65.2
BolC8t48630H Brassica oleracea HOM05D003534 ORTHO05D004911 5.6e-16 88.6 69 65.2
PSO675G2831 Papaver somniferum HOM05D003534 ORTHO05D004911 2.8e-15 86.3 125 45.6
Ciclev10027844m.g Citrus clementina HOM05D003534 ORTHO05D004911 6.1e-15 85.1 52 78.8
COL.COLO4_25956 Corchorus olitorius HOM05D003534 ORTHO05D004911 6.1e-15 85.1 68 64.7
PSO541G3604 Papaver somniferum HOM05D003534 ORTHO05D004911 8.0e-15 84.7 125 44.8
Lj3P241T16 Lonicera japonica HOM05D010180 ORTHO05D011045 1.0e-14 84.3 115 43.5
AL6G48970 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 1.4e-14 84.0 69 62.3
Lj7A729G39 Lonicera japonica HOM05D010180 ORTHO05D002396 1.4e-14 84.0 152 36.8
Zm00001eb296160 Zea mays HOM05D003534 ORTHO05D004911 1.4e-14 84.0 122 47.5
CBR_g6403 Chara braunii HOM05D003534 ORTHO05D004911 1.8e-14 83.6 122 42.6
Medtr4g070380 Medicago truncatula HOM05D003534 ORTHO05D004911 1.8e-14 83.6 61 67.2
BcaB05g23691 Brassica carinata HOM05D003534 ORTHO05D004911 2.3e-14 83.2 69 59.4
CANSAT35G1090 Cannabis sativa HOM05D003534 ORTHO05D004911 2.3e-14 83.2 70 60.0
Zm00001eb343980 Zea mays HOM05D003534 ORTHO05D004911 2.3e-14 83.2 122 46.7
Lj2P897T19 Lonicera japonica HOM05D010180 ORTHO05D011045 3.4e-13 79.3 150 36.7
CARHR233180 Cardamine hirsuta HOM05D003534 ORTHO05D004911 9.8e-13 77.8 69 56.5
Lj3P57T17 Lonicera japonica HOM05D010180 ORTHO05D011045 1.3e-12 77.4 109 45.9
Lj1C11T4 Lonicera japonica HOM05D010180 ORTHO05D011045 3.7e-12 75.9 153 33.3
PSO675G9373 Papaver somniferum HOM05D003534 ORTHO05D004911 4.9e-12 75.5 101 45.5
CANSAT21G0339 Cannabis sativa HOM05D003534 ORTHO05D004911 6.4e-12 75.1 65 55.4
Lj3C82G2 Lonicera japonica HOM05D001538 ORTHO05D011045 4.1e-11 72.4 46 76.1
SMO361G0274 Selaginella moellendorffii HOM05D003534 ORTHO05D011045 5.4e-11 72.0 68 54.4
Cre12.g529500 Chlamydomonas reinhardtii HOM05D003534 ORTHO05D004911 1.2e-10 70.9 72 54.2
Lj1A545G61 Lonicera japonica HOM05D000764 ORTHO05D011045 4.6e-10 68.9 80 53.8
Lj4C390T3 Lonicera japonica HOM05D010180 ORTHO05D011045 1.3e-09 67.4 79 51.9
SMO361G0029 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 3.0e-09 66.2 53 62.3
Lju2566C0G3 Lonicera japonica HOM05D001538 ORTHO05D011045 5.0e-09 65.5 79 49.4
Lj4C9G2 Lonicera japonica HOM05D010180 ORTHO05D011045 6.6e-09 65.1 49 69.4
Lj2C1217T9 Lonicera japonica HOM05D010180 ORTHO05D011045 8.6e-09 64.7 79 49.4
PRCOL_00001513 Prasinoderma coloniale HOM05D003534 ORTHO05D004911 3.6e-07 59.3 73 50.7
Lj6C584G1 Lonicera japonica HOM05D010180 ORTHO05D011045 3.1e-06 56.2 79 44.3
Cfa023799 Carpinus fangiana HOM05D003534 ORTHO05D004911 4.0e-06 55.8 70 45.7
ClCG11G000160 Citrullus lanatus HOM05D001035 ORTHO05D001045 6.8e-06 55.1 35 74.3
SMO361G0680 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 6.8e-06 55.1 53 58.5


User provided reference genes

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