Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 2116.3 1058 100.0
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1833.9 1056 86.5
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1822.4 1049 86.6
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1813.9 1050 85.7
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1786.9 1034 86.1
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1786.5 1049 84.6
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1784.6 1049 84.2
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1780.8 1049 84.7
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1751.5 1051 83.9
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1741.9 1056 81.4
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1738.0 1056 81.3
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1635.9 1054 76.3
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1626.7 1054 75.7
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1625.9 1052 76.7
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1625.5 1054 76.3
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1622.4 1055 75.9
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1619.4 1055 75.2
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1617.1 1053 75.7
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1602.4 1055 74.7
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1602.0 1056 75.5
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1600.5 1054 75.4
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1587.4 1056 74.9
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1586.6 1052 74.3
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1582.4 1054 74.5
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1579.7 1054 74.6
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1574.3 1051 73.5
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1572.8 1056 73.6
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1572.4 1054 74.7
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1555.8 1054 73.5
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1555.0 1054 73.9
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1551.6 1051 72.6
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1548.9 1054 73.0
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1548.5 1052 73.2
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1543.1 1052 72.1
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1542.7 1119 69.3
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1536.5 1071 72.1
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1534.2 1071 72.0
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1533.1 1057 71.5
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1525.8 1053 71.7
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1515.7 1052 71.7
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1515.7 1055 71.2
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1515.7 1057 71.7
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1513.8 1057 71.5
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1511.9 1142 67.2
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1510.4 1042 72.1
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1509.6 1140 68.1
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1508.8 1054 71.2
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1502.6 1054 71.0
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1502.6 1054 70.4
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1497.3 1061 71.3
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1494.6 1054 69.6
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1489.9 1055 70.2
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1488.4 1052 69.0
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1486.5 1054 70.5
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1483.4 975 74.5
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1480.3 1054 70.8
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1476.5 1055 70.1
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1476.1 1054 69.6
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1472.6 1055 69.8
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1472.6 1055 69.7
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1472.6 1054 69.6
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1471.8 1051 70.9
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1470.3 1052 69.5
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1469.9 960 76.0
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1468.4 1053 70.2
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1467.2 1054 70.3
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1464.9 1040 70.7
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1460.3 1056 69.3
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1458.4 1054 69.8
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1454.9 1050 69.0
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1454.1 1054 69.2
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1448.3 1129 66.1
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1448.3 1055 67.9
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1446.4 1053 69.1
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1443.7 844 85.0
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1441.0 1050 68.9
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1435.2 1057 68.8
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1429.8 1062 69.2
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1424.8 1096 66.1
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1423.7 1062 66.9
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1421.0 946 74.1
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1420.6 1058 68.0
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1409.8 1052 68.1
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1407.1 1053 67.1
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1405.6 1263 58.8
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1398.3 1063 66.1
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1379.4 1060 65.5
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1296.2 1054 62.0
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1277.3 843 75.0
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1275.4 854 74.4
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1238.0 801 77.5
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1134.4 791 70.9
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1087.4 1081 53.1
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 7.2e-312 1074.3 1062 53.1
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 7.2e-312 1073.9 959 60.0
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 1.4e-311 1072.8 788 68.1
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 9.1e-297 1023.8 1067 51.4
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 2.0e-280 969.5 778 63.1
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 7.2e-262 907.9 633 72.2
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 5.2e-260 901.7 950 54.4
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 8.1e-237 824.7 658 62.6
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 1.6e-232 810.4 517 76.0
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 6.0e-232 808.5 518 77.4
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.3e-214 749.2 698 56.6
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 7.4e-206 721.8 448 77.7
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 6.2e-205 718.8 481 73.0
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 6.2e-205 718.8 448 77.5
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 1.0e-202 711.4 451 76.7
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 2.9e-202 709.9 460 74.6
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 4.9e-202 709.1 445 75.1
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 2.7e-200 703.4 441 75.7
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 5.1e-199 699.1 449 75.5
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 1.5e-198 697.6 496 69.8
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 6.5e-194 682.2 459 72.5
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 1.4e-188 664.5 448 73.0
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 9.4e-185 651.7 472 67.6
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 8.0e-168 595.5 458 65.5
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 1.1e-166 591.7 451 65.6
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 2.6e-166 590.5 427 68.4
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 1.2e-160 571.6 399 70.9
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 5.2e-159 566.2 448 63.6
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 6.3e-157 559.3 366 74.3
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.2e-154 550.8 363 73.6
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 8.0e-152 542.3 405 66.7
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 6.8e-151 539.3 610 49.5
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 8.0e-144 515.8 1113 31.5
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 1.7e-117 428.3 267 79.0
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 1.2e-112 412.1 260 78.8
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 4.7e-112 410.2 286 73.1
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 5.2e-111 406.8 271 75.6
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.7e-101 375.2 238 78.2
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 4.9e-101 373.6 241 79.7
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 8.4e-101 372.9 213 86.4
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 3.5e-99 367.5 318 59.1
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.5e-97 362.1 266 72.2
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 4.5e-70 270.8 156 82.1
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 1.0e-66 259.6 209 61.7
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 5.7e-65 253.8 286 45.5
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 7.2e-60 236.9 205 59.0
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 6.7e-50 203.8 183 61.7
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.2e-41 176.4 115 73.0
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.2e-41 176.4 156 58.3
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 1.8e-39 169.1 155 59.4
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 9.5e-36 156.8 189 49.7
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 1.2e-33 149.8 137 53.3
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 7.5e-33 147.1 137 51.8
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 2.2e-32 145.6 109 67.9
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 9.2e-31 140.2 107 68.2
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 3.5e-30 138.3 85 70.6
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 2.9e-29 135.2 83 74.7
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 8.0e-27 127.1 96 67.7
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 6.4e-24 117.5 96 61.5
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 1.7e-21 109.4 96 58.3
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 3.0e-21 108.6 55 87.3
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 2.3e-18 99.0 91 54.9
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 3.1e-18 98.6 100 54.0
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 5.8e-17 94.4 58 70.7
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 5.8e-17 94.4 62 75.8
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 3.2e-15 88.6 75 60.0
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 9.2e-15 87.0 53 79.2
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 2.7e-14 85.5 83 48.2
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 1.7e-13 82.8 74 58.1
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 2.5e-12 79.0 56 60.7
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 4.3e-12 78.2 73 60.3
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 5.2e-10 71.2 44 75.0
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 6.8e-10 70.9 74 51.4
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 6.8e-10 70.9 41 78.0
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 1.5e-09 69.7 37 81.1
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 1.3e-08 66.6 48 70.8


User provided reference genes

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