Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 2.4e-157 558.9 305 100.0
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.9e-123 445.7 322 80.1
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 1.0e-112 410.6 327 73.1
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 2.9e-110 402.5 331 73.1
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 2.7e-108 396.0 328 72.3
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.2e-105 387.1 319 74.6
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 6.2e-105 384.8 294 75.5
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.2e-103 380.6 325 72.6
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 1.5e-103 380.2 331 70.4
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 4.1e-101 372.1 319 73.0
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 4.7e-97 358.6 328 67.1
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 9.8e-95 350.9 298 69.5
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 3.5e-92 342.4 328 65.2
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 4.3e-90 335.5 312 62.5
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 9.9e-87 324.3 312 60.9
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 4.9e-86 322.0 332 60.8
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 9.2e-85 317.8 324 59.6
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 7.8e-84 314.7 380 53.9
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 6.6e-83 311.6 326 59.8
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 8.6e-83 311.2 308 60.1
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 3.3e-82 309.3 326 59.2
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 9.6e-82 307.8 315 58.4
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 1.2e-81 307.4 368 54.6
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 3.6e-81 305.8 336 56.8
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 2.4e-80 303.1 311 60.1
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 8.9e-80 301.2 309 58.3
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 5.8e-79 298.5 308 58.8
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 7.6e-79 298.1 308 58.4
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 9.9e-79 297.7 337 55.5
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 1.3e-78 297.4 322 58.4
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 8.4e-78 294.7 308 60.1
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 1.4e-77 293.9 349 56.4
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 1.9e-77 293.5 316 59.5
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 2.4e-77 293.1 331 55.0
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 9.3e-77 291.2 401 50.9
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 7.8e-76 288.1 319 58.3
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 3.0e-75 286.2 337 54.9
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 1.1e-74 284.3 316 59.8
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 2.5e-74 283.1 311 57.6
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 2.8e-73 279.6 309 57.0
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 3.6e-73 279.3 318 57.5
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 8.1e-73 278.1 312 56.4
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 3.1e-72 276.2 347 52.4
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 6.9e-72 275.0 311 56.3
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 6.9e-72 275.0 334 52.7
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 1.2e-71 274.2 347 52.2
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 1.5e-71 273.9 330 52.1
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 2.6e-71 273.1 308 54.5
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 5.8e-71 271.9 334 51.8
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 9.9e-71 271.2 306 54.6
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 1.7e-70 270.4 332 51.5
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 3.8e-70 269.2 313 57.5
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 4.9e-70 268.9 360 49.4
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 4.9e-70 268.9 330 52.1
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 9.3e-69 264.6 309 55.7
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 1.0e-67 261.2 330 50.6
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 6.7e-67 258.5 282 55.7
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 1.9e-66 256.9 349 50.1
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.3e-65 254.2 333 50.2
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 2.8e-65 253.1 325 52.9
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 5.8e-63 245.4 346 49.1
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.9e-61 240.4 225 64.4
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 1.9e-61 240.4 354 46.3
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 2.4e-61 240.0 308 50.6
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 7.1e-61 238.4 308 52.6
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 1.8e-59 233.8 338 47.3
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 3.9e-59 232.6 353 48.4
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 3.9e-59 232.6 280 52.9
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 2.5e-58 229.9 347 46.7
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 6.2e-57 225.3 303 49.2
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 2.0e-55 220.3 193 72.0
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 3.4e-55 219.5 272 52.9
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.4e-55 219.5 285 53.3
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 5.8e-55 218.8 364 43.1
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 5.8e-55 218.8 364 46.2
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 2.2e-54 216.9 389 44.0
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 8.4e-54 214.9 128 87.5
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.2e-53 213.0 261 52.9
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 7.9e-52 208.4 366 41.5
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 5.1e-51 205.7 318 47.2
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 6.7e-51 205.3 350 44.3
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.9e-50 203.8 280 50.0
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 3.7e-49 199.5 315 47.6
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 1.4e-48 197.6 311 45.7
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 6.9e-48 195.3 277 50.9
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 9.0e-48 194.9 279 46.6
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 5.9e-47 192.2 249 51.4
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 5.9e-47 192.2 249 51.4
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 7.6e-47 191.8 350 42.0
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.7e-46 190.7 256 50.0
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 3.8e-46 189.5 274 48.5
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 3.8e-46 189.5 274 48.5
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.1e-45 188.0 411 38.4
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 1.4e-45 187.6 257 51.0
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 2.5e-45 186.8 253 48.6
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 1.2e-44 184.5 225 51.1
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 3.6e-44 183.0 255 48.6
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 7.9e-44 181.8 370 39.2
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.5e-42 176.8 201 57.2
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 1.7e-41 174.1 395 38.2
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 8.2e-41 171.8 278 45.0
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 2.4e-40 170.2 228 50.9
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 2.4e-40 170.2 365 36.7
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 6.9e-40 168.7 397 37.8
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.1e-36 155.6 145 65.5
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.0e-35 154.8 139 64.0
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 1.3e-33 147.9 263 41.8
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.1e-29 134.8 183 50.3
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 5.5e-29 132.5 137 60.6
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 3.9e-27 126.3 257 40.1
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 8.8e-27 125.2 231 40.7
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 2.0e-26 124.0 319 35.1
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 2.0e-26 124.0 254 38.2
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 3.7e-25 119.8 103 68.0
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 1.2e-23 114.8 132 55.3
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 4.5e-23 112.8 110 60.9
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 4.5e-23 112.8 110 60.9
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 1.3e-22 111.3 65 80.0
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 1.3e-22 111.3 68 77.9
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 1.6e-20 104.4 140 49.3
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.7e-20 103.6 67 79.1
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.7e-17 94.4 133 45.9
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.8e-17 92.8 139 45.3
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 3.1e-16 90.1 135 44.4
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 4.1e-16 89.7 279 34.1
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 8.5e-14 82.0 190 36.3
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 8.5e-14 82.0 115 43.5
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 8.5e-14 82.0 75 64.0
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 4.2e-13 79.7 188 34.6
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 6.5e-06 55.8 73 47.9
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 6.5e-06 55.8 73 47.9


User provided reference genes

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