Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 2.6e-178 628.6 319 100.0
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 9.5e-157 557.0 320 88.1
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 3.5e-151 538.5 320 86.6
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 7.8e-151 537.3 320 86.2
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 2.9e-150 535.4 318 85.8
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 1.4e-147 526.6 321 85.0
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.8e-147 526.2 321 85.4
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.8e-147 526.2 321 85.4
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 1.5e-146 523.1 318 85.5
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 1.3e-145 520.0 322 84.2
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 2.4e-144 515.8 321 84.4
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 9.2e-144 513.8 320 83.8
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 1.1e-141 506.9 359 76.0
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 1.1e-139 500.4 321 79.8
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 2.6e-138 495.7 321 79.8
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 1.1e-136 490.3 321 77.9
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 4.1e-136 488.4 320 76.2
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 6.0e-135 484.6 321 76.9
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 1.7e-134 483.0 321 79.1
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 2.3e-134 482.6 318 77.4
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 5.1e-134 481.5 312 78.2
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 1.5e-133 479.9 321 76.6
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.9e-133 479.6 319 78.1
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 4.3e-133 478.4 361 69.5
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.1e-132 476.1 320 74.1
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 3.6e-132 475.3 319 77.4
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 2.3e-131 472.6 324 76.5
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 8.9e-131 470.7 311 77.2
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 1.2e-130 470.3 319 74.3
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 9.9e-130 467.2 320 74.1
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 4.9e-129 464.9 321 72.3
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 6.4e-129 464.5 304 77.6
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 2.4e-128 462.6 319 75.2
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 2.4e-128 462.6 317 71.6
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 9.2e-128 460.7 320 75.0
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 1.0e-126 457.2 317 71.0
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.3e-126 456.1 319 74.3
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 3.0e-126 455.7 334 72.8
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 3.0e-126 455.7 317 71.3
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 1.2e-124 450.3 305 76.4
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 1.2e-124 450.3 318 72.0
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 2.8e-124 449.1 317 69.4
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 4.7e-124 448.4 326 71.8
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 8.1e-124 447.6 324 68.8
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 4.0e-123 445.3 308 70.5
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 8.9e-123 444.1 304 71.7
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.4e-122 442.2 317 72.6
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 9.9e-122 440.7 322 72.7
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.4e-120 436.8 318 73.3
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 2.4e-120 436.0 322 71.1
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 2.7e-119 432.6 321 68.5
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 1.3e-118 430.3 319 66.5
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 1.7e-118 429.9 317 71.0
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 3.9e-118 428.7 319 71.2
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 5.1e-118 428.3 317 71.0
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 1.9e-117 426.4 318 70.8
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 4.3e-117 425.2 321 67.9
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.6e-116 423.3 318 67.9
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 2.4e-115 419.5 325 67.4
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 5.3e-115 418.3 320 66.9
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 5.3e-115 418.3 324 65.7
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 2.0e-114 416.4 318 69.8
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 3.4e-114 415.6 305 71.8
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 5.8e-114 414.8 299 67.2
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 1.7e-113 413.3 320 68.4
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 8.4e-113 411.0 319 68.7
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 8.4e-113 411.0 323 65.3
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 1.1e-112 410.6 314 69.4
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 1.9e-112 409.8 288 70.8
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 9.3e-112 407.5 289 72.0
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 2.1e-111 406.4 293 71.7
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 3.9e-110 402.1 300 69.3
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 9.6e-109 397.5 293 69.6
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 3.6e-108 395.6 289 69.6
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 6.2e-108 394.8 289 68.9
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 8.1e-108 394.4 299 68.2
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 1.4e-107 393.7 312 65.7
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 1.8e-107 393.3 289 69.2
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 4.0e-107 392.1 290 68.3
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 4.0e-107 392.1 289 69.9
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 6.9e-107 391.3 289 68.9
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 6.9e-107 391.3 243 83.5
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 1.2e-106 390.6 326 62.3
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 9.9e-106 387.5 289 68.2
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 1.3e-105 387.1 302 65.9
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 1.7e-105 386.7 298 65.1
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 3.8e-105 385.6 315 65.4
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 4.9e-105 385.2 285 70.5
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 8.4e-105 384.4 315 65.4
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 1.4e-104 383.6 309 66.3
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 4.2e-104 382.1 293 67.9
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 2.1e-103 379.8 286 67.8
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 1.5e-101 373.6 323 62.5
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 1.9e-101 373.2 317 63.1
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 6.2e-100 368.2 270 68.5
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 2.0e-98 363.2 351 57.8
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 7.9e-95 351.3 337 56.1
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.0e-94 350.9 374 51.6
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.1e-93 347.4 355 56.9
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 1.5e-93 347.1 297 60.6
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 5.3e-91 338.6 323 57.9
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 2.5e-88 329.7 338 53.6
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 2.8e-84 316.2 222 72.5
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.2e-79 300.8 220 70.5
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 9.1e-75 284.6 197 73.6
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 1.7e-73 280.4 319 48.3
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 3.8e-73 279.3 225 67.1
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 4.5e-66 255.8 226 61.1
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 4.7e-63 245.7 280 47.9
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 1.4e-62 244.2 155 76.1
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 1.7e-60 237.3 325 44.9
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 8.5e-57 224.9 344 40.7
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 3.7e-52 209.5 200 58.5
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 8.3e-44 181.8 121 74.4
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 2.3e-33 147.1 175 55.4
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 7.3e-32 142.1 93 73.1
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.6e-31 141.0 96 70.8
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 3.4e-29 133.3 295 33.6
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 6.4e-28 129.0 79 78.5
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 6.4e-28 129.0 79 78.5
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 1.4e-27 127.9 351 29.3
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 3.3e-24 116.7 340 27.9
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 1.6e-23 114.4 70 78.6
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 1.4e-19 101.3 82 65.9
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 1.0e-17 95.1 81 61.7
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 2.3e-17 94.0 81 60.5
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 2.3e-17 94.0 81 60.5
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 1.5e-16 91.3 78 61.5
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 1.5e-16 91.3 52 82.7
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 4.7e-15 86.3 91 50.5
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 5.8e-13 79.3 44 81.8
TPR.G25462 Trifolium pratense HOM05D000254 ORTHO05D000165 2.4e-11 73.9 95 46.3
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 2.3e-09 67.4 62 56.5
TPR.G25476 Trifolium pratense HOM05D000254 ORTHO05D000165 1.1e-08 65.1 65 60.0
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 3.6e-07 60.1 47 68.1


User provided reference genes

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