Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 2.1e-236 822.0 425 100.0
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 4.3e-173 611.7 406 78.8
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 7.1e-168 594.3 414 76.6
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 8.7e-166 587.4 436 72.9
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 3.3e-165 585.5 426 72.8
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 9.6e-165 583.9 407 73.7
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 2.1e-164 582.8 407 74.0
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 3.8e-161 572.0 411 73.7
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 3.8e-161 572.0 419 73.3
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 1.4e-160 570.1 416 71.6
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 9.3e-160 567.4 467 66.8
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 7.9e-159 564.3 416 71.9
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 6.7e-158 561.2 394 75.9
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 4.5e-154 548.5 412 70.4
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 4.5e-154 548.5 409 70.4
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 4.5e-154 548.5 409 70.7
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.4e-150 537.0 441 67.8
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 1.8e-150 536.6 410 70.7
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 5.1e-150 535.0 463 64.4
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 5.1e-150 535.0 420 69.5
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 2.5e-149 532.7 441 68.0
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 3.3e-149 532.3 442 67.9
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 3.7e-148 528.9 399 70.7
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 3.7e-148 528.9 401 69.6
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 1.8e-147 526.6 456 64.0
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.8e-147 526.6 442 65.2
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 5.3e-147 525.0 458 65.1
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 5.3e-147 525.0 461 63.6
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 6.9e-147 524.6 445 64.9
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 1.2e-146 523.9 482 61.0
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 2.6e-146 522.7 423 66.9
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 2.6e-146 522.7 397 72.0
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 5.9e-146 521.5 364 73.6
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 1.7e-145 520.0 431 66.8
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 1.7e-145 520.0 410 67.8
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 3.8e-145 518.8 457 63.5
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 1.4e-144 516.9 451 64.1
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 5.5e-144 515.0 442 65.6
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 9.4e-144 514.2 452 64.4
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 9.4e-144 514.2 462 63.9
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 2.1e-143 513.1 402 70.4
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 2.7e-143 512.7 502 59.6
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 3.6e-143 512.3 407 68.3
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 6.1e-143 511.5 404 67.1
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 3.9e-142 508.8 450 63.6
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 1.1e-141 507.3 442 64.0
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 5.7e-141 505.0 367 70.8
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 5.7e-141 505.0 367 70.8
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 7.4e-141 504.6 362 73.8
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 1.7e-140 503.4 407 67.6
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.7e-140 503.4 369 71.0
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 2.8e-140 502.7 406 66.7
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 3.7e-140 502.3 487 58.3
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.8e-139 500.0 367 70.0
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 4.1e-139 498.8 457 61.3
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 1.5e-138 496.9 364 72.3
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 3.4e-138 495.7 391 66.5
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 4.5e-138 495.4 414 66.2
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 1.0e-137 494.2 460 60.9
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 1.7e-137 493.4 405 67.7
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 1.7e-137 493.4 405 65.7
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.8e-137 492.3 355 70.4
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.5e-136 489.6 453 60.5
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 5.5e-136 488.4 367 69.5
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 1.2e-135 487.3 499 56.1
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 7.4e-133 478.0 470 58.3
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 1.7e-132 476.9 401 65.1
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 3.7e-132 475.7 408 65.0
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 4.1e-131 472.2 317 78.2
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 1.2e-130 470.7 408 62.7
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 1.2e-130 470.7 312 78.8
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 3.5e-130 469.2 412 62.6
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 7.7e-130 468.0 461 57.3
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 1.5e-128 463.8 413 62.2
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 7.2e-128 461.5 422 61.4
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 2.1e-127 459.9 408 61.5
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 3.6e-127 459.1 416 60.8
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 1.0e-126 457.6 349 67.6
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 4.0e-126 455.7 433 59.4
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 4.0e-126 455.7 355 67.3
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 1.5e-125 453.8 404 62.9
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 1.5e-125 453.8 404 62.9
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.3e-124 450.7 421 59.1
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 1.3e-124 450.7 432 58.8
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 4.8e-124 448.7 427 59.3
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 1.8e-123 446.8 317 73.2
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 3.8e-121 439.1 471 54.6
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 5.0e-121 438.7 398 59.0
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 1.9e-120 436.8 276 81.2
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 1.9e-120 436.8 276 81.2
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 1.6e-119 433.7 278 80.2
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 1.6e-119 433.7 461 53.6
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 1.0e-118 431.0 472 54.4
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.3e-116 424.1 436 55.3
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 9.1e-115 417.9 280 77.1
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 2.3e-102 376.7 271 73.1
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 4.6e-74 282.7 379 45.6
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 1.0e-73 281.6 442 41.0
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 3.0e-73 280.0 175 79.4
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 1.9e-72 277.3 296 51.4
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 7.3e-72 275.4 177 80.2
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 1.3e-65 254.6 214 65.4
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 3.0e-65 253.4 270 52.2
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 2.2e-52 210.7 207 57.5
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 4.6e-50 203.0 285 44.2
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 5.1e-49 199.5 335 38.8
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 1.3e-47 194.9 277 43.7
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 3.7e-47 193.4 156 66.7
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 8.2e-47 192.2 235 44.7
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 1.2e-45 188.3 460 34.6
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 5.5e-35 152.9 151 51.7
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 3.6e-34 150.2 303 39.9
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 2.7e-26 124.0 196 44.9
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 6.3e-23 112.8 83 67.5
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 5.2e-17 93.2 91 56.0
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 1.1e-16 92.0 83 53.0
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 1.1e-16 92.0 83 53.0
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 2.0e-16 91.3 83 51.8
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 2.4e-14 84.3 231 30.7
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 5.3e-14 83.2 70 55.7
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 2.6e-13 80.9 70 54.3
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 1.7e-12 78.2 71 49.3
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 5.0e-12 76.6 56 62.5
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 5.0e-12 76.6 56 62.5
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 2.5e-11 74.3 64 56.2
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 7.2e-11 72.8 73 58.9
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 1.5e-08 65.1 172 34.3
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 2.2e-07 61.2 172 33.7
Dinv40374 Davidia involucrata HOM05D032807 ORTHO05D181779 4.8e-07 60.1 100 43.0
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 8.3e-07 59.3 172 30.8
GSVIVG01003951001 Vitis vinifera HOM05D007191 ORTHO05D003232 1.1e-06 58.9 172 32.0
Psat4g117600 Pisum sativum HOM05D007191 ORTHO05D009370 1.8e-06 58.2 172 33.1
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 3.1e-06 57.4 175 27.4
Ca_22623_v3 Cicer arietinum L. HOM05D007191 ORTHO05D009370 3.1e-06 57.4 174 32.8
Medtr8g046830 Medicago truncatula HOM05D005801 ORTHO05D008555 3.1e-06 57.4 47 66.0
Aa31LG6G14960 Aethionema arabicum HOM05D007191 ORTHO05D009370 5.3e-06 56.6 172 32.0
Dinv01186 Davidia involucrata HOM05D032807 ORTHO05D008555 7.0e-06 56.2 100 43.0
MBI16_g30311_MAGBIO Magnolia biondii HOM05D007191 ORTHO05D009370 7.0e-06 56.2 174 31.6
Nitab4.5_0000402g0060 Nicotiana tabacum HOM05D007191 ORTHO05D009370 7.0e-06 56.2 175 32.6
Pp3c5_6200 Physcomitrium patens HOM05D007191 ORTHO05D009370 7.0e-06 56.2 194 28.4
CAN.G1771.10 Capsicum annuum HOM05D007191 ORTHO05D009370 9.1e-06 55.8 179 30.7
Potri.005G147600 Populus trichocarpa HOM05D007191 ORTHO05D009370 9.1e-06 55.8 172 30.2
Sabra05G0118000 Salix brachista HOM05D007191 ORTHO05D009370 9.1e-06 55.8 172 30.8


User provided reference genes

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