Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 3.8e-235 817.8 406 100.0
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 7.8e-172 607.4 398 75.1
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 2.5e-170 602.4 400 74.8
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 1.2e-169 600.1 400 75.0
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 4.7e-169 598.2 400 74.2
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 6.2e-169 597.8 399 74.9
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 1.1e-168 597.0 402 76.4
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 3.1e-168 595.5 400 74.5
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 1.2e-167 593.6 400 74.2
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 2.2e-166 589.3 400 73.2
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 4.9e-166 588.2 400 74.2
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 6.4e-166 587.8 400 73.8
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 2.4e-165 585.9 400 72.8
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 5.4e-165 584.7 400 73.8
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 7.0e-165 584.3 400 72.2
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 9.2e-165 583.9 400 71.8
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 9.2e-165 583.9 400 73.0
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 3.5e-164 582.0 400 71.5
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 3.5e-164 582.0 400 72.0
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 3.5e-164 582.0 402 72.9
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 5.0e-163 578.2 401 71.1
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 1.5e-162 576.6 401 72.1
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.5e-162 576.6 400 72.8
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 3.3e-162 575.5 400 71.2
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 1.2e-161 573.5 400 71.0
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 1.6e-161 573.2 399 70.9
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 2.8e-161 572.4 397 71.5
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 2.8e-161 572.4 400 70.8
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 3.6e-161 572.0 401 71.8
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 4.7e-161 571.6 400 70.8
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 1.8e-160 569.7 400 70.8
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 2.3e-160 569.3 401 72.8
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 8.9e-160 567.4 431 67.3
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 2.0e-159 566.2 400 70.8
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 2.0e-159 566.2 400 72.0
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 2.6e-159 565.8 400 70.8
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 2.6e-159 565.8 400 71.5
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 5.8e-159 564.7 400 70.0
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 7.5e-159 564.3 405 69.6
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 9.9e-159 563.9 405 69.4
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 9.9e-159 563.9 400 71.5
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 9.9e-159 563.9 400 71.5
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 1.3e-158 563.5 390 72.1
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 2.2e-158 562.8 400 70.0
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 3.7e-158 562.0 400 69.5
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 3.7e-158 562.0 399 70.2
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 4.9e-158 561.6 400 70.0
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 1.4e-157 560.1 400 70.5
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 2.4e-157 559.3 399 69.4
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 3.2e-157 558.9 399 69.7
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 9.2e-157 557.4 400 70.0
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 9.2e-157 557.4 400 68.5
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 2.1e-156 556.2 400 69.5
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 3.5e-156 555.4 399 68.7
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 6.0e-156 554.7 400 70.5
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 1.5e-154 550.1 404 68.6
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 4.3e-154 548.5 406 70.0
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 4.3e-154 548.5 400 68.2
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 7.3e-154 547.7 400 67.0
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 9.5e-154 547.4 405 68.1
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 9.5e-154 547.4 405 68.1
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 2.8e-153 545.8 384 71.1
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.4e-152 542.7 382 71.5
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 3.1e-152 542.3 400 68.5
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 3.1e-152 542.3 400 68.0
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 3.1e-152 542.3 400 68.5
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 4.0e-152 542.0 401 67.8
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 6.8e-152 541.2 397 69.8
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 6.8e-152 541.2 400 67.5
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 1.3e-150 537.0 400 67.5
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 1.7e-150 536.6 400 67.0
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 7.1e-149 531.2 400 66.2
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 2.7e-148 529.3 400 66.5
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 2.7e-148 529.3 400 66.5
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 3.5e-148 528.9 384 69.5
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 3.5e-148 528.9 401 67.1
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 6.0e-148 528.1 408 66.4
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 6.6e-147 524.6 398 64.3
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 1.1e-146 523.9 400 67.2
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 6.2e-145 518.1 400 65.8
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 1.1e-144 517.3 400 65.8
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 2.9e-142 509.2 410 64.6
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 3.8e-142 508.8 303 81.8
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 1.1e-141 507.3 400 62.8
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 1.6e-140 503.4 406 62.1
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 3.5e-140 502.3 400 64.5
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 5.1e-139 498.4 400 64.2
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 9.6e-138 494.2 404 61.6
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 1.1e-136 490.7 407 61.9
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.5e-135 486.9 413 61.3
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 4.9e-134 481.9 507 53.8
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 1.1e-125 454.1 399 60.4
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 1.2e-124 450.7 609 44.3
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 2.1e-124 449.9 396 59.6
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 1.9e-114 416.8 408 54.7
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 6.9e-112 408.3 400 55.5
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.1e-109 401.0 409 51.1
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 6.7e-107 391.7 415 51.6
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 2.8e-105 386.3 320 62.2
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 9.1e-88 328.2 195 80.0
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 1.7e-86 323.9 303 56.8
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 2.9e-86 323.2 188 82.4
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 9.4e-85 318.2 201 79.1
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 6.1e-68 262.3 212 65.1
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 1.2e-63 248.1 208 63.0
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.0e-59 235.0 395 35.7
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 9.8e-58 228.4 135 80.0
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 8.3e-57 225.3 288 44.1
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 8.6e-54 215.3 133 75.9
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 1.3e-30 138.3 85 71.8
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 3.9e-30 136.7 111 63.1
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 1.5e-29 134.8 137 51.8
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 1.9e-29 134.4 137 51.8
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 6.2e-28 129.4 108 63.9
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 8.4e-25 119.0 98 62.2
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 4.8e-20 103.2 62 83.9
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 1.1e-19 102.1 83 65.1
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 3.1e-19 100.5 79 68.4
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 2.4e-11 74.3 55 70.9
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 1.2e-10 72.0 77 53.2
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 1.5e-10 71.6 44 72.7
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 2.0e-10 71.2 41 75.6
CDE05G2763 Ceratophyllum demersum HOM05D004198 ORTHO05D130465 3.5e-07 60.5 86 40.7
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 1.8e-06 58.2 46 65.2
ECA236G2630 Erigeron canadensis HOM05D000366 ORTHO05D000437 6.7e-06 56.2 39 69.2


User provided reference genes

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