Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 7.6e-36 153.3 77 100.0
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 1.1e-29 132.9 69 94.2
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.4e-29 131.7 69 94.2
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.4e-29 131.7 69 94.2
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.4e-29 131.7 69 94.2
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.4e-29 131.7 69 94.2
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.4e-29 131.7 69 94.2
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.4e-29 131.7 69 94.2
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 2.4e-29 131.7 69 94.2
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 2.4e-29 131.7 69 92.8
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 2.4e-29 131.7 69 92.8
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 2.4e-29 131.7 69 94.2
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 2.4e-29 131.7 69 94.2
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 3.1e-29 131.3 69 92.8
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 3.1e-29 131.3 69 92.8
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 3.1e-29 131.3 69 94.2
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 3.1e-29 131.3 69 92.8
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 5.3e-29 130.6 69 92.8
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.9e-29 130.2 69 92.8
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 6.9e-29 130.2 71 88.7
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 6.9e-29 130.2 69 91.3
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 6.9e-29 130.2 69 91.3
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 6.9e-29 130.2 69 91.3
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 6.9e-29 130.2 69 91.3
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 9.0e-29 129.8 69 91.3
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.2e-28 129.4 69 92.8
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 1.5e-28 129.0 69 89.9
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.5e-28 129.0 69 92.8
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.5e-28 129.0 69 91.3
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 2.0e-28 128.6 70 90.0
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 2.0e-28 128.6 69 91.3
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.0e-28 128.6 69 91.3
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.6e-28 128.3 69 92.8
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.6e-28 128.3 69 89.9
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.6e-28 128.3 69 91.3
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.6e-28 128.3 69 91.3
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.4e-28 127.9 69 89.9
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.4e-28 127.9 69 89.9
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 3.4e-28 127.9 69 89.9
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 3.4e-28 127.9 69 89.9
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 3.4e-28 127.9 69 91.3
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 3.4e-28 127.9 69 91.3
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 3.4e-28 127.9 69 91.3
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 4.5e-28 127.5 69 89.9
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.5e-28 127.5 69 89.9
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.5e-28 127.5 69 89.9
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.5e-28 127.5 69 89.9
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 4.5e-28 127.5 69 91.3
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 5.8e-28 127.1 69 89.9
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 5.8e-28 127.1 69 88.4
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.8e-28 127.1 69 91.3
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 7.6e-28 126.7 69 88.4
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 7.6e-28 126.7 69 92.8
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 7.6e-28 126.7 69 88.4
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.0e-27 126.3 69 89.9
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 1.0e-27 126.3 69 88.4
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 1.3e-27 125.9 69 88.4
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 1.3e-27 125.9 69 88.4
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.3e-27 125.9 69 88.4
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.3e-27 125.9 69 88.4
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 1.7e-27 125.6 69 87.0
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 1.7e-27 125.6 69 88.4
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 2.2e-27 125.2 69 87.0
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.2e-27 125.2 69 87.0
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.2e-27 125.2 69 88.4
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 2.2e-27 125.2 69 87.0
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.2e-27 125.2 69 89.9
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 2.9e-27 124.8 69 87.0
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 2.9e-27 124.8 69 87.0
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 2.9e-27 124.8 69 87.0
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 2.9e-27 124.8 69 88.4
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.9e-27 124.8 69 89.9
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 3.8e-27 124.4 69 88.4
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 3.8e-27 124.4 69 87.0
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 3.8e-27 124.4 69 88.4
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 3.8e-27 124.4 70 87.1
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 4.9e-27 124.0 69 88.4
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 4.9e-27 124.0 69 87.0
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 6.5e-27 123.6 69 84.1
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 8.4e-27 123.2 69 87.0
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 8.4e-27 123.2 69 87.0
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 8.4e-27 123.2 69 87.0
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 8.4e-27 123.2 69 87.0
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 8.4e-27 123.2 69 87.0
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 1.1e-26 122.9 69 85.5
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 1.1e-26 122.9 69 85.5
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 1.1e-26 122.9 69 89.9
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 1.1e-26 122.9 69 87.0
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 1.4e-26 122.5 69 87.0
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 1.4e-26 122.5 69 87.0
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 1.4e-26 122.5 69 87.0
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.9e-26 122.1 69 85.5
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 1.9e-26 122.1 69 85.5
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 1.9e-26 122.1 69 84.1
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 1.9e-26 122.1 69 84.1
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 2.5e-26 121.7 69 87.0
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 2.5e-26 121.7 69 87.0
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 2.5e-26 121.7 69 87.0
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 4.2e-26 120.9 69 85.5
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 4.2e-26 120.9 69 85.5
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 4.2e-26 120.9 69 85.5
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 4.2e-26 120.9 69 85.5
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 4.2e-26 120.9 69 82.6
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 4.2e-26 120.9 69 84.1
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 4.2e-26 120.9 69 85.5
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 5.5e-26 120.6 69 87.0
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 5.5e-26 120.6 69 85.5
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 5.5e-26 120.6 69 85.5
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 5.5e-26 120.6 69 84.1
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 5.5e-26 120.6 69 85.5
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 5.5e-26 120.6 69 85.5
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 5.5e-26 120.6 69 85.5
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 7.1e-26 120.2 69 84.1
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.2e-25 119.4 69 85.5
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.2e-25 119.4 69 85.5
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 1.2e-25 119.4 69 82.6
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 2.1e-25 118.6 69 81.2
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 2.7e-25 118.2 69 85.5
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 3.5e-25 117.9 69 81.2
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 6.0e-25 117.1 69 79.7
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 6.0e-25 117.1 69 76.8
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 6.0e-25 117.1 69 82.6
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 6.0e-25 117.1 69 78.3
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.0e-24 116.3 69 79.7
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.0e-24 116.3 69 81.2
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.3e-24 115.2 69 84.1
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 3.9e-24 114.4 69 82.6
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 3.9e-24 114.4 69 78.3
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 5.1e-24 114.0 69 76.8
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.1e-23 112.8 69 76.8
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.3e-22 109.4 60 88.3
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.3e-22 109.4 69 71.0
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.4e-21 105.9 63 79.4
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.4e-21 105.1 57 91.2
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 1.5e-20 102.4 54 92.6
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 7.2e-18 93.6 51 88.2
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 1.6e-17 92.4 69 65.2
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 4.6e-17 90.9 69 59.4
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 6.1e-17 90.5 51 86.3
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 7.9e-17 90.1 69 65.2
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 1.0e-16 89.7 69 60.9
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 1.3e-16 89.4 55 80.0
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 1.8e-16 89.0 70 57.1
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 3.0e-16 88.2 69 60.9
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 3.0e-16 88.2 65 60.0
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 6.7e-16 87.0 64 59.4
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 5.0e-11 70.9 59 59.3


User provided reference genes

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