Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1850.5 950 100.0
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1296.6 1093 68.2
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 2.5e-229 799.7 1161 43.9
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 7.3e-229 798.1 1152 44.3
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 4.9e-217 758.8 1109 43.0
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 9.2e-208 728.0 1125 43.0
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 2.7e-199 699.9 1163 40.6
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 7.8e-199 698.4 1117 42.8
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 7.1e-192 675.2 1151 39.2
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 1.2e-183 647.9 1098 40.3
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 2.8e-180 636.7 1151 38.1
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 2.8e-180 636.7 1103 39.1
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 1.4e-179 634.4 1148 37.9
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 1.2e-178 631.3 1130 38.4
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 6.5e-177 625.5 1144 38.5
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 1.9e-176 624.0 1143 37.5
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 3.3e-173 613.2 1110 37.5
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 7.4e-173 612.1 1153 36.4
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 6.9e-171 605.5 1140 36.9
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 3.8e-169 599.7 1145 37.4
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 1.1e-163 581.6 1155 36.4
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 1.4e-163 581.3 1152 36.2
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 9.0e-163 578.6 1087 37.7
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 2.6e-162 577.0 1054 38.0
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 1.0e-161 575.1 1076 38.0
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 1.3e-161 574.7 1101 37.3
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 2.2e-161 573.9 1140 36.1
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 6.5e-161 572.4 1146 36.1
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 8.5e-161 572.0 1146 36.2
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 1.6e-159 567.8 1158 35.1
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 1.4e-158 564.7 1129 34.6
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.5e-157 561.2 1111 35.6
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 9.7e-157 558.5 1145 34.9
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.8e-156 557.0 1128 34.8
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 6.3e-156 555.8 1111 35.2
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 4.1e-155 553.1 1111 35.4
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.2e-154 551.6 823 41.4
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.0e-154 550.8 1089 36.2
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 1.1e-152 545.0 1117 34.6
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 4.2e-152 543.1 1134 35.0
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 3.6e-151 540.0 1149 33.1
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 2.6e-149 533.9 1125 33.8
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 2.2e-148 530.8 1057 34.8
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 8.2e-148 528.9 1117 34.9
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 8.2e-148 528.9 1117 35.0
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 7.0e-147 525.8 1161 33.5
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 7.0e-147 525.8 1161 33.5
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 3.5e-146 523.5 1101 34.1
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 3.8e-145 520.0 995 35.6
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 1.5e-144 518.1 1144 32.9
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 1.9e-144 517.7 1170 33.0
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 1.0e-142 511.9 1140 32.5
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 2.2e-140 504.2 1144 32.5
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 4.8e-140 503.1 1123 32.1
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 2.0e-138 497.7 1130 32.7
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 4.5e-138 496.5 1143 32.3
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.0e-137 495.4 1095 34.0
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 1.2e-135 488.4 1099 33.3
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 2.1e-135 487.6 1127 32.1
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 4.0e-134 483.4 1146 32.3
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 3.7e-132 476.9 1141 32.3
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 9.4e-128 462.2 1134 30.6
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 2.7e-127 460.7 1121 32.0
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 1.0e-126 458.8 1135 31.0
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 1.4e-126 458.4 1140 32.4
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 2.0e-125 454.5 1138 31.2
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 5.7e-125 453.0 1135 30.6
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 3.1e-123 447.2 741 37.2
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 5.4e-123 446.4 1141 31.7
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 3.5e-122 443.7 1151 30.8
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 5.0e-121 439.9 1139 31.3
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 2.6e-117 427.6 1115 29.9
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 8.6e-113 412.5 1086 31.0
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 1.2e-111 408.7 1120 31.0
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 1.6e-111 408.3 1086 30.9
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 1.8e-110 404.8 1102 29.4
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 2.0e-109 401.4 1097 30.5
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 8.3e-108 396.0 1138 29.6
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 1.6e-106 391.7 1086 30.3
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 5.0e-105 386.7 1135 29.3
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 3.3e-104 384.0 1137 29.0
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.3e-104 383.6 1136 29.3
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 7.3e-104 382.9 1184 28.5
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.1e-103 381.3 1136 29.9
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 1.8e-102 378.3 1137 29.2
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 7.1e-99 366.3 1098 29.3
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 7.1e-99 366.3 574 42.3
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 1.3e-97 362.1 1100 29.0
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 8.6e-97 359.4 1128 28.2
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 2.5e-96 357.8 1133 28.9
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 1.2e-95 355.5 1104 29.7
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 1.1e-94 352.4 1143 29.4
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 4.0e-94 350.5 1134 29.1
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 4.0e-94 350.5 1134 29.1
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 6.8e-94 349.7 1062 27.9
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 1.5e-93 348.6 1122 28.5
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.8e-92 344.0 804 31.3
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.2e-90 339.0 1044 29.1
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 1.6e-82 312.0 1146 26.3
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.4e-69 267.7 830 28.8
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.6e-42 177.6 499 29.1
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 1.3e-39 169.5 590 27.1
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 5.3e-38 164.1 235 46.8
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.9e-36 158.3 154 59.7
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 6.7e-25 120.6 484 25.8
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 8.8e-25 120.2 258 32.6
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 3.3e-24 118.2 118 55.9
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 4.8e-23 114.4 154 46.8
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 3.6e-18 98.2 1055 22.0
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 2.2e-15 89.0 154 39.6
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.3e-12 79.7 410 22.2
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 6.5e-12 77.4 103 42.7
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 6.5e-12 77.4 136 38.2
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 5.5e-11 74.3 636 22.6
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 8.0e-10 70.5 91 40.7
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 3.0e-09 68.6 122 36.9
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.7e-07 62.8 60 51.7
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 3.7e-07 61.6 128 35.2
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.7e-07 61.6 105 32.4


User provided reference genes

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