Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 2045.4 1041 100.0
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1794.6 1043 87.2
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1761.1 1039 85.5
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1742.6 1043 85.2
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1739.5 1035 84.9
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1730.3 1041 84.2
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1729.5 1039 83.9
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1727.6 1044 84.0
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1726.5 1073 82.3
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1720.7 1015 85.3
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1711.0 1037 83.9
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1710.3 1058 84.0
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1707.2 1052 83.3
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1705.6 1034 82.7
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1705.3 1016 85.0
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1697.9 1043 83.6
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1696.8 1015 84.3
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1696.0 1048 82.3
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1695.6 1039 83.2
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1687.2 1049 82.6
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1681.4 1043 81.2
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1681.0 1032 83.4
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1680.2 1032 83.4
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1674.8 1044 81.2
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1673.3 1045 81.9
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1672.1 1043 81.1
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1668.3 1051 81.7
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1667.9 1056 81.0
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1666.0 1077 79.9
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1665.6 1073 80.0
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1661.7 1051 81.4
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1661.7 1043 80.5
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1660.6 1034 81.3
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1659.4 1048 80.9
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1657.9 1043 80.6
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1657.1 1043 81.3
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1655.6 1045 81.4
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1654.4 1064 79.9
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1652.5 1045 80.8
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1651.7 1054 80.3
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1651.3 1064 79.8
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1649.0 1038 80.3
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1647.5 1059 80.1
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1645.2 1058 80.3
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1640.9 1042 79.8
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1638.6 1058 80.0
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1622.1 1056 79.0
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1619.0 1066 78.5
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1618.2 1020 79.8
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1615.1 1052 79.8
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1609.7 1037 79.3
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1606.7 1051 78.0
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1601.3 1020 79.4
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1600.9 1042 78.0
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1600.9 1051 78.0
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1597.0 1027 79.1
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1596.3 1050 77.6
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1594.3 1050 77.9
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1592.4 1046 78.0
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1590.5 1049 77.9
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1588.2 1048 76.4
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1582.0 1048 76.6
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1581.6 1057 77.5
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1579.3 1042 77.4
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1578.9 1047 78.4
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1578.5 1048 76.4
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1577.8 1048 77.9
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1575.8 1047 76.4
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1575.1 1042 77.1
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1574.7 1047 76.5
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1574.3 1048 76.4
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1573.9 1050 76.9
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1573.5 1056 76.5
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1569.7 1051 76.0
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1567.7 1048 76.0
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1567.0 1048 76.4
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1566.6 1037 77.6
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1558.5 1060 76.0
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1558.1 1037 77.2
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1557.0 1054 75.1
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1557.0 1054 75.1
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1556.2 1055 76.8
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1552.0 1055 75.0
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1552.0 1058 76.2
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1550.8 1051 75.4
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1550.0 1055 74.9
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1548.1 1047 76.9
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1545.8 1154 70.5
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1545.4 1051 75.0
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1542.7 1045 76.7
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1541.6 1045 76.7
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1537.7 1051 74.8
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1534.6 1041 74.7
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1533.9 1022 76.2
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1533.1 1054 74.8
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1531.5 1089 74.1
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1527.3 1015 75.6
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1523.5 1041 74.3
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1519.2 1087 73.7
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1496.1 1058 73.4
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1462.6 1017 72.6
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1437.2 1039 71.9
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1405.6 1036 70.8
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1401.0 1051 71.2
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1397.1 958 74.4
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1386.3 937 75.6
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1365.9 1031 69.2
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1329.3 1011 69.3
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1328.5 957 69.7
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1328.2 1032 66.9
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1291.6 1017 65.0
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1227.6 827 75.3
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1113.6 1023 56.7
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1097.0 763 75.0
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1092.0 1024 56.8
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 3.9e-308 1061.6 1021 54.4
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.1e-307 1060.1 631 86.5
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.1e-302 1043.5 1025 54.3
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 2.6e-296 1022.3 721 70.3
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 1.1e-294 1016.9 714 70.9
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.1e-294 1014.2 1010 56.8
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 2.6e-280 969.1 1033 53.1
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.6e-272 941.0 962 56.3
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 6.4e-271 937.9 1036 51.9
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 1.9e-270 936.4 619 75.9
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-269 933.7 1041 51.9
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 7.9e-245 851.3 552 78.1
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 3.8e-239 832.4 480 87.1
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 6.5e-223 778.5 444 88.5
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-207 726.9 1025 45.0
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 2.7e-192 676.8 437 78.0
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 1.4e-185 654.4 1015 41.0
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.4e-185 653.7 399 80.5
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 2.9e-178 630.2 383 82.8
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-177 628.2 481 68.8
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 1.1e-172 611.7 522 60.0
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 7.1e-169 599.0 454 67.4
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 3.0e-167 593.6 1046 37.5
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 6.9e-156 555.8 418 65.6
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.5e-145 519.6 373 72.1
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-144 518.5 367 73.0
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-144 518.5 367 73.0
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 4.8e-141 506.5 509 58.0
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.7e-138 498.0 564 52.5
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-137 495.0 372 70.7
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 2.5e-134 484.2 323 73.7
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 2.7e-128 464.2 586 46.8
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 5.7e-126 456.4 653 43.0
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 1.4e-121 441.8 1062 31.7
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 5.5e-113 413.3 274 76.6
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 2.0e-102 378.3 290 66.6
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 6.8e-95 353.2 279 66.3
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 4.1e-92 344.0 195 87.7
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-86 325.9 517 42.2
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 1.4e-76 292.4 395 46.3
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 2.4e-76 291.6 524 35.9
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 5.0e-74 283.9 417 45.1
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 3.3e-73 281.2 183 77.0
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.8e-67 260.0 226 62.4
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.0e-62 245.4 172 74.4
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.3e-61 242.7 219 61.6
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.0e-58 231.5 308 47.4
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 3.8e-53 214.5 138 78.3
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.4e-52 211.8 162 71.6
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 4.6e-51 207.6 360 42.2
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.8e-47 195.7 121 80.2
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 2.6e-46 191.8 191 50.8
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 4.0e-39 167.9 200 49.0
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 2.1e-35 155.6 177 53.1
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.3e-34 152.1 121 66.9
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 2.1e-32 145.6 253 39.9
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 2.6e-30 138.7 265 38.9
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.5e-28 132.1 91 74.7
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.9e-25 122.5 90 65.6
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 5.3e-15 87.8 67 62.7
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 3.8e-13 81.6 72 51.4
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.5e-12 79.0 52 73.1
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 6.1e-11 74.3 49 71.4
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 3.9e-10 71.6 59 61.0
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 2.6e-09 68.9 69 44.9


User provided reference genes

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