Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A824T16 Lonicera japonica HOM05D002653 ORTHO05D002623 8.5e-137 490.3 250 100.0
Dinv38369 Davidia involucrata HOM05D002653 ORTHO05D002623 1.6e-95 353.2 239 74.9
Solyc11g045160.3 Solanum lycopersicum HOM05D002653 ORTHO05D002623 2.0e-85 319.7 237 65.4
TAR624G0800 Trochodendron aralioides HOM05D002653 ORTHO05D002623 2.6e-85 319.3 239 69.0
Cfa016258 Carpinus fangiana HOM05D002653 ORTHO05D002623 7.6e-85 317.8 251 66.1
QL04p064992 Quercus lobata HOM05D002653 ORTHO05D002623 7.6e-85 317.8 241 67.6
Sopen11g020620 Solanum pennellii HOM05D002653 ORTHO05D002623 1.3e-84 317.0 237 65.0
DCAR_018920 Daucus carota HOM05D002653 ORTHO05D002623 2.2e-84 316.2 239 68.6
CAN.G690.1 Capsicum annuum HOM05D002653 ORTHO05D002623 3.8e-84 315.5 253 61.3
Migut.L00787 Erythranthe guttata HOM05D002653 ORTHO05D002623 7.1e-83 311.2 233 66.1
SGA_v2.0_scaffold131G34416 Striga asiatica HOM05D002653 ORTHO05D002623 7.1e-83 311.2 244 64.3
Migut.L00840 Erythranthe guttata HOM05D002653 ORTHO05D002623 1.2e-82 310.5 233 65.7
Lsat_1_v5_gn_6_56501 Lactuca sativa HOM05D002653 ORTHO05D002623 1.2e-82 310.5 238 67.6
Lsat_1_v5_gn_8_5081 Lactuca sativa HOM05D002653 ORTHO05D002623 2.1e-82 309.7 238 67.6
ECA233G1976 Erigeron canadensis HOM05D002653 ORTHO05D002623 7.8e-82 307.8 238 66.8
CSS0038262 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 1.0e-81 307.4 239 65.3
Rhsim13G0127300 Rhododendron simsii HOM05D002653 ORTHO05D002623 1.0e-81 307.4 239 66.1
vmacro03485 Vaccinium macrocarpon HOM05D002653 ORTHO05D002623 1.3e-81 307.0 271 61.3
CSS0026519 Camellia sinensis var. sinensis HOM05D002653 ORTHO05D002623 5.1e-81 305.1 239 64.9
Atru.chr8.1040 Acer truncatum HOM05D002653 ORTHO05D002623 6.6e-81 304.7 237 67.5
SalBow1G2769 Salvia bowleyana HOM05D002653 ORTHO05D002623 4.8e-79 298.5 236 62.3
SalBow1G3632 Salvia bowleyana HOM05D002653 ORTHO05D002623 1.4e-78 297.0 236 61.9
HanXRQChr07g0186761 Helianthus annuus HOM05D002653 ORTHO05D002623 9.0e-78 294.3 236 65.3
Manes.09G076300 Manihot esculenta HOM05D002653 ORTHO05D002623 2.6e-77 292.7 239 63.2
Prupe.3G028500 Prunus persica HOM05D002653 ORTHO05D002623 3.4e-77 292.4 240 65.0
Gohir.A05G394600 Gossypium hirsutum HOM05D002653 ORTHO05D002623 1.3e-76 290.4 239 63.2
Manes.11G165700 Manihot esculenta HOM05D002653 ORTHO05D002623 1.7e-76 290.0 241 61.8
Gohir.D04G020301 Gossypium hirsutum HOM05D002653 ORTHO05D002623 2.2e-76 289.7 239 63.6
Gorai.012G024100 Gossypium raimondii HOM05D002653 ORTHO05D002623 2.2e-76 289.7 239 63.6
PGR044G0026 Punica granatum HOM05D002653 ORTHO05D002623 3.8e-76 288.9 234 64.5
Thecc.01G150000 Theobroma cacao HOM05D002653 ORTHO05D002623 1.9e-75 286.6 239 63.6
Duzib114G0204 Durio zibethinus HOM05D002653 ORTHO05D002623 9.3e-75 284.3 239 62.8
Peaxi162Scf00126g00051 Petunia axillaris HOM05D002653 ORTHO05D002623 9.3e-75 284.3 239 60.7
Phvul.002G234312 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 2.1e-74 283.1 243 61.3
Sc15g0007450 Simmondsia chinensis HOM05D002653 ORTHO05D002623 2.1e-74 283.1 239 61.1
Phvul.002G234304 Phaseolus vulgaris HOM05D002653 ORTHO05D002623 1.0e-73 280.8 240 61.2
Nn7g37406 Nelumbo nucifera HOM05D002653 ORTHO05D002623 1.3e-73 280.4 237 62.4
Potri.001G455600 Populus trichocarpa HOM05D002653 ORTHO05D002623 1.8e-73 280.0 239 60.7
MSTRG.8096 Avicennia marina HOM05D002653 ORTHO05D002623 3.9e-73 278.9 238 59.2
Glyma.13G174600 Glycine max HOM05D002653 ORTHO05D002623 3.9e-73 278.9 236 62.3
Lalb_Chr01g0009381 Lupinus albus HOM05D002653 ORTHO05D002623 3.9e-73 278.9 238 61.3
MD17G1156800 Malus domestica HOM05D002653 ORTHO05D002623 5.1e-73 278.5 230 63.5
TWI34G1636 Tripterygium wilfordii HOM05D002653 ORTHO05D002623 6.7e-73 278.1 240 62.9
FAN02G0462 Fragaria x ananassa HOM05D002653 ORTHO05D002623 8.7e-73 277.7 232 62.1
Medtr2g007250 Medicago truncatula HOM05D002653 ORTHO05D002623 8.7e-73 277.7 238 61.8
FAN14G0870 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.5e-72 276.9 232 61.6
FvH4_6g36300 Fragaria vesca HOM05D002653 ORTHO05D002623 1.9e-72 276.6 232 61.6
FAN09G4442 Fragaria x ananassa HOM05D002653 ORTHO05D002623 1.9e-72 276.6 232 61.6
CANSAT01G2419 Cannabis sativa HOM05D002653 ORTHO05D002623 2.5e-72 276.2 240 61.2
FAN14G5588 Fragaria x ananassa HOM05D002653 ORTHO05D002623 4.3e-72 275.4 232 61.6
LjContig00141g0016117 Lotus japonicus HOM05D002653 ORTHO05D002623 4.3e-72 275.4 240 60.8
Sabra16G0308200 Salix brachista HOM05D002653 ORTHO05D002623 1.3e-71 273.9 239 59.4
ClCG03G010410 Citrullus lanatus HOM05D002653 ORTHO05D002623 2.1e-71 273.1 237 58.2
Lj4g0020533 Lotus japonicus HOM05D002653 ORTHO05D002623 4.8e-71 271.9 239 60.7
Oeu013190.1 Olea europaea HOM05D002653 ORTHO05D002623 1.4e-70 270.4 242 59.9
Psat0s3513g0080 Pisum sativum HOM05D002653 ORTHO05D002623 6.9e-70 268.1 238 59.7
MELO3C010033.2 Cucumis melo HOM05D002653 ORTHO05D002623 9.0e-70 267.7 238 59.2
CDE12G0934 Ceratophyllum demersum HOM05D002653 ORTHO05D002623 2.0e-69 266.5 237 57.0
THA.LOC104814962 Tarenaya hassleriana HOM05D002653 ORTHO05D002623 1.1e-67 260.8 243 56.0
Aqoxy2G01525 Aquilegia oxysepala HOM05D002653 ORTHO05D002623 3.2e-67 259.2 236 58.5
ATR1155G033 Amborella trichopoda HOM05D002653 ORTHO05D002623 3.0e-65 252.7 237 57.8
Carub.0006s2259 Capsella rubella HOM05D002653 ORTHO05D002623 5.1e-65 251.9 243 54.3
TPR.G8155 Trifolium pratense HOM05D002653 ORTHO05D002623 4.8e-63 245.4 194 63.4
AL6G36330 Arabidopsis lyrata HOM05D002653 ORTHO05D002623 6.2e-63 245.0 236 55.9
Os08g0116700 Oryza sativa ssp. japonica HOM05D002653 ORTHO05D002623 1.8e-62 243.4 233 54.9
AT5G24740 Arabidopsis thaliana HOM05D002653 ORTHO05D002623 5.3e-62 241.9 243 53.9
AUR62013467 Chenopodium quinoa HOM05D002653 ORTHO05D002623 2.0e-61 240.0 236 54.7
arahy.Tifrunner.gnm1.ann1.GW217K Arachis hypogaea HOM05D002653 ORTHO05D002623 5.8e-61 238.4 238 56.7
CsaV3_1G044330 Cucumis sativus L. HOM05D002653 ORTHO05D002623 3.8e-60 235.7 212 57.1
PSO063G3289 Papaver somniferum HOM05D002653 ORTHO05D002623 5.5e-59 231.9 230 53.9
HPP92_001360 Vanilla planifolia HOM05D002653 ORTHO05D002623 1.2e-58 230.7 244 50.8
BolC7t44828H Brassica oleracea HOM05D002653 ORTHO05D002623 1.6e-58 230.3 265 48.7
BcaNung01253 Brassica carinata HOM05D002653 ORTHO05D002623 4.6e-58 228.8 249 50.6
BraA06t26480Z Brassica rapa HOM05D002653 ORTHO05D002623 6.0e-58 228.4 264 49.2
PSO782G1285 Papaver somniferum HOM05D002653 ORTHO05D002623 3.3e-56 222.6 230 53.0
Ah.05g169290 Amaranthus hybridus HOM05D002653 ORTHO05D002623 1.1e-54 217.6 176 65.3
C07p42990 Brassica napus HOM05D002653 ORTHO05D002623 2.4e-54 216.5 290 44.5
A06p35550 Brassica napus HOM05D002653 ORTHO05D002623 9.0e-54 214.5 289 45.0
EL10Ac1g01415 Beta vulgaris HOM05D002653 ORTHO05D002623 5.9e-53 211.8 229 52.0
RcHm_v2.0_Chr2g0148311 Rosa chinensis HOM05D002653 ORTHO05D002623 7.6e-53 211.5 187 61.0
Aa31LG11G3960 Aethionema arabicum HOM05D002653 ORTHO05D002623 2.4e-46 189.9 257 44.7
AUR62026805 Chenopodium quinoa HOM05D002653 ORTHO05D002623 1.2e-45 187.6 236 47.0
unitig_8.g3108 Utricularia gibba HOM05D002653 ORTHO05D002623 2.6e-45 186.4 185 54.6
Thhalv10003500m.g Eutrema salsugineum HOM05D002653 ORTHO05D002623 1.0e-44 184.5 243 46.1
Ciclev10013321m.g Citrus clementina HOM05D002653 ORTHO05D002623 4.6e-42 175.6 157 59.9
SMO353G0260 Selaginella moellendorffii HOM05D002653 ORTHO05D002623 6.1e-42 175.3 243 42.8
GSVIVG01019366001 Vitis vinifera HOM05D002653 ORTHO05D002623 4.4e-40 169.1 140 65.7
Zm00001eb260910 Zea mays HOM05D002653 ORTHO05D002623 1.7e-39 167.2 131 63.4
Cc11_g00290 Coffea canephora HOM05D002653 ORTHO05D007806 2.2e-39 166.8 146 61.0
Sed0003631 Sechium edule HOM05D002653 ORTHO05D002623 6.3e-39 165.2 161 56.5
CiPaw.06G000500 Carya illinoinensis HOM05D002653 ORTHO05D002623 8.2e-39 164.9 142 62.7
Ca_14758_v3 Cicer arietinum L. HOM05D002653 ORTHO05D002623 8.2e-39 164.9 160 60.0
Psat6g120600 Pisum sativum HOM05D001580 ORTHO05D002623 2.0e-37 160.2 236 44.1
Cpa.g.c28352.2 Carica papaya HOM05D002653 ORTHO05D002623 4.5e-37 159.1 134 69.4
COL.COLO4_33574 Corchorus olitorius HOM05D002653 ORTHO05D002623 5.7e-32 142.1 97 68.0
SEGI_37635 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 1.4e-30 137.5 130 53.1
CiPaw.06G000300 Carya illinoinensis HOM05D002653 ORTHO05D002623 1.2e-29 134.4 76 77.6
Cc11_g00300 Coffea canephora HOM05D002653 ORTHO05D002623 2.6e-29 133.3 76 77.6
Hma1.2p1_1074F.1_g254370 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 5.9e-29 132.1 77 81.8
Hma1.2p1_1074F.1_g254376 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 5.9e-29 132.1 77 81.8
VMungo0251G2462 Vigna mungo HOM05D002653 ORTHO05D002623 5.0e-28 129.0 88 71.6
Nitab4.5_0004202g0020 Nicotiana tabacum HOM05D002653 ORTHO05D002623 1.9e-27 127.1 108 60.2
Pp3c15_25690 Physcomitrium patens HOM05D002653 ORTHO05D002623 5.5e-27 125.6 247 37.7
Hma1.2p1_1074F.1_g254380 Hydrangea macrophylla HOM05D002653 ORTHO05D002623 1.2e-26 124.4 76 75.0
Mapoly0009s0011 Marchantia polymorpha HOM05D002653 ORTHO05D002623 4.7e-26 122.5 227 37.4
GSVIVG01019369001 Vitis vinifera HOM05D002653 ORTHO05D002623 2.0e-24 117.1 76 71.1
Ciclev10013786m.g Citrus clementina HOM05D002653 ORTHO05D002623 1.5e-19 100.9 76 65.8
arahy.Tifrunner.gnm1.ann1.8RHS4X Arachis hypogaea HOM05D002653 ORTHO05D002623 2.5e-19 100.1 131 48.9
VMungo0251G1383 Vigna mungo HOM05D002653 ORTHO05D002623 1.4e-17 94.4 81 60.5
SEGI_23454 Sequoiadendron giganteum HOM05D002653 ORTHO05D002623 9.8e-16 88.2 96 47.9
Lsat_1_v5_gn_4_86300 Lactuca sativa HOM05D002653 ORTHO05D002623 3.8e-12 76.3 131 41.2
Lsat_1_v5_gn_7_38641 Lactuca sativa HOM05D002653 ORTHO05D002623 8.6e-12 75.1 131 41.2
PGSC0003DMG400022861 Solanum tuberosum HOM05D002653 ORTHO05D002623 4.2e-11 72.8 34 91.2
RcHm_v2.0_Chr2g0148301 Rosa chinensis HOM05D002653 ORTHO05D002623 2.0e-08 63.9 40 70.0
Lsat_1_v5_gn_6_48501 Lactuca sativa HOM05D000238 ORTHO05D002623 7.5e-08 62.0 53 60.4
MELO3C003359.2 Cucumis melo HOM05D001092 ORTHO05D000923 2.8e-07 60.1 159 29.6
CsaV3_3G049680 Cucumis sativus L. HOM05D001092 ORTHO05D000923 4.9e-07 59.3 159 28.9
Sed0007068 Sechium edule HOM05D001092 ORTHO05D000923 1.1e-06 58.2 132 30.3


User provided reference genes

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