Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 2.5e-295 1018.1 523 100.0
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.4e-157 560.5 551 59.2
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.0e-155 552.0 553 58.0
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 2.1e-153 546.6 547 58.9
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 8.0e-153 544.7 554 57.8
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 9.1e-149 531.2 552 55.1
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 1.2e-148 530.8 546 58.2
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.9e-147 526.2 551 54.8
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 8.5e-147 524.6 546 57.9
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 2.5e-146 523.1 537 57.4
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 4.2e-146 522.3 542 56.1
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 6.8e-144 515.0 549 55.9
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 3.4e-143 512.7 550 55.6
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 6.3e-142 508.4 576 53.0
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 1.4e-141 507.3 550 54.5
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 9.1e-141 504.6 549 53.9
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 4.5e-140 502.3 562 54.1
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 1.0e-139 501.1 544 55.1
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 3.8e-139 499.2 552 54.9
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 2.5e-138 496.5 547 54.3
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 9.5e-138 494.6 552 54.7
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 1.2e-137 494.2 550 56.0
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 2.1e-137 493.4 559 53.8
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 2.3e-136 490.0 547 54.7
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.2e-136 488.8 542 53.7
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 1.2e-135 487.6 549 53.0
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 9.8e-135 484.6 554 53.1
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 9.8e-135 484.6 552 53.3
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 1.4e-133 480.7 565 52.4
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 1.8e-133 480.3 552 54.0
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 2.4e-133 479.9 557 52.8
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 2.4e-133 479.9 574 52.1
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.4e-133 478.8 542 52.6
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 7.0e-133 478.4 544 53.3
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 9.2e-133 478.0 549 53.7
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 1.2e-132 477.6 550 53.6
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 2.0e-132 476.9 542 53.0
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 4.5e-132 475.7 548 53.3
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 5.9e-132 475.3 548 52.2
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.9e-132 475.3 549 53.6
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 7.8e-132 474.9 562 52.1
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.0e-131 474.6 538 53.5
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 1.3e-131 474.2 546 53.1
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.9e-131 473.0 538 53.3
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 2.5e-130 469.9 543 52.9
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 5.6e-130 468.8 548 52.2
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 6.1e-129 465.3 548 52.2
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.4e-128 464.2 554 51.4
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 3.0e-128 463.0 549 51.2
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 4.0e-128 462.6 538 50.9
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.2e-128 462.2 548 52.2
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 8.9e-128 461.5 548 52.6
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 8.9e-128 461.5 548 51.8
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 2.0e-127 460.3 538 52.4
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 2.2e-126 456.8 556 50.9
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 4.9e-126 455.7 546 50.0
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 4.1e-125 452.6 546 51.3
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 3.5e-124 449.5 541 52.5
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 3.5e-124 449.5 549 50.5
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 4.6e-124 449.1 559 50.8
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 7.8e-124 448.4 550 51.5
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 1.7e-123 447.2 558 50.5
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 3.9e-123 446.0 538 51.7
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 1.2e-121 441.0 548 50.4
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 1.1e-120 438.0 575 50.3
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.8e-120 437.2 553 49.5
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 4.0e-120 436.0 552 49.5
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 6.8e-120 435.3 545 49.9
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 1.5e-119 434.1 546 51.1
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 9.8e-119 431.4 552 48.4
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 3.7e-118 429.5 553 49.2
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 6.4e-118 428.7 555 49.2
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.1e-117 427.9 545 49.4
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 1.9e-117 427.2 534 51.7
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 9.2e-117 424.9 543 51.0
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 4.6e-116 422.5 556 48.7
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 6.0e-116 422.2 547 49.2
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 3.0e-115 419.9 562 49.6
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 3.0e-115 419.9 547 49.7
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 1.5e-114 417.5 550 50.4
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 4.3e-114 416.0 554 49.6
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 9.5e-114 414.8 547 49.0
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 1.2e-113 414.5 542 48.7
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 1.2e-113 414.5 552 51.1
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 4.0e-112 409.5 547 48.4
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 8.9e-112 408.3 552 48.2
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 1.5e-111 407.5 549 49.4
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 2.0e-111 407.1 546 49.3
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 3.4e-111 406.4 543 48.1
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 5.8e-111 405.6 543 47.9
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 9.9e-111 404.8 549 49.2
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 1.7e-110 404.1 549 49.2
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 1.7e-110 404.1 549 49.2
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 1.7e-110 404.1 553 49.5
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 2.9e-110 403.3 549 48.6
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 1.1e-109 401.4 547 47.7
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 1.1e-109 401.4 547 47.5
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 3.2e-109 399.8 548 48.9
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 3.2e-109 399.8 549 47.2
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 3.2e-109 399.8 541 47.1
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 6.0e-108 395.6 547 48.1
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 2.3e-107 393.7 556 47.7
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 8.6e-107 391.7 546 48.0
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 1.5e-106 391.0 553 47.2
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 2.8e-105 386.7 535 48.4
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 1.1e-104 384.8 547 47.3
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 1.1e-104 384.8 550 46.9
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.4e-104 384.4 548 47.1
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 2.4e-104 383.6 550 46.9
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.2e-103 381.3 545 47.0
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 2.0e-103 380.6 539 47.7
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 7.6e-103 378.6 548 46.5
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 2.3e-99 367.1 545 45.3
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 1.2e-95 354.8 542 44.5
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.1e-92 344.0 556 42.4
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 2.1e-92 344.0 383 54.3
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 2.7e-92 343.6 511 45.2
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 1.7e-91 340.9 553 43.4
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 6.6e-91 339.0 563 43.5
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 1.3e-89 334.7 388 52.8
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 4.8e-89 332.8 557 44.7
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 8.1e-89 332.0 549 42.8
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 4.5e-87 326.2 545 42.8
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 1.9e-85 320.9 558 43.7
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 2.7e-84 317.0 547 43.0
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 2.5e-82 310.5 544 41.7
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 1.1e-72 278.5 564 39.7
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 1.8e-72 277.7 385 47.3
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 3.4e-71 273.5 490 40.6
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.0e-59 235.3 560 35.7
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.0e-59 235.3 345 45.8
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.0e-58 231.1 218 58.3
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 2.0e-58 231.1 218 58.3
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.2e-57 227.6 487 38.4
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 2.4e-56 224.2 230 56.1
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 2.6e-55 220.7 325 46.2
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.9e-53 214.5 347 43.8
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.9e-52 209.1 214 57.5
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 3.8e-38 163.7 138 64.5
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 4.7e-36 156.8 248 42.3
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 8.8e-35 152.5 578 28.9
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 7.5e-34 149.4 138 58.7
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 6.3e-33 146.4 523 31.0
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 1.1e-29 135.6 574 27.5
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 1.9e-29 134.8 398 30.2
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 7.2e-29 132.9 149 50.3
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 2.7e-28 131.0 156 52.6
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 2.3e-27 127.9 425 31.8
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.2e-23 115.5 236 41.1
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 1.9e-21 108.2 254 37.8
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 5.2e-11 73.6 115 42.6
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 6.8e-11 73.2 172 30.8
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.2e-10 72.4 115 41.7
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 2.6e-10 71.2 427 25.5
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 5.8e-10 70.1 189 32.8
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 3.2e-08 64.3 92 47.8


User provided reference genes

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