Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A819T71 Lonicera japonica HOM05D000451 ORTHO05D000351 3.3e-64 248.4 147 100.0
CSS0001608 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 7.3e-11 71.2 34 82.4
ATR0794G052 Amborella trichopoda HOM05D000451 ORTHO05D000351 9.5e-11 70.9 36 77.8
CSS0027533 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 1.6e-10 70.1 67 52.2
Migut.A00947 Erythranthe guttata HOM05D000451 ORTHO05D000351 2.8e-10 69.3 62 53.2
Dinv20717 Davidia involucrata HOM05D000451 ORTHO05D000351 3.6e-10 68.9 34 79.4
Potri.005G091200 Populus trichocarpa HOM05D000451 ORTHO05D000351 3.6e-10 68.9 56 57.1
Actinidia06570 Actinidia chinensis HOM05D000451 ORTHO05D000351 4.7e-10 68.6 34 79.4
vmacro19970 Vaccinium macrocarpon HOM05D000451 ORTHO05D000351 4.7e-10 68.6 34 79.4
Dinv08027 Davidia involucrata HOM05D000451 ORTHO05D000351 6.1e-10 68.2 67 50.7
Aqoxy3G04302 Aquilegia oxysepala HOM05D000451 ORTHO05D000351 8.0e-10 67.8 36 75.0
CAN.G150.8 Capsicum annuum HOM05D000451 ORTHO05D000351 1.0e-09 67.4 48 64.6
Cfa008754 Carpinus fangiana HOM05D000451 ORTHO05D000351 1.0e-09 67.4 34 76.5
Lsat_1_v5_gn_5_71781 Lactuca sativa HOM05D000451 ORTHO05D000351 1.0e-09 67.4 34 76.5
Lj4A819G67 Lonicera japonica HOM05D000451 ORTHO05D000351 1.0e-09 67.4 45 64.4
Manes.11G102400 Manihot esculenta HOM05D000451 ORTHO05D000351 1.0e-09 67.4 32 78.1
Rhsim05G0169400 Rhododendron simsii HOM05D000451 ORTHO05D000351 1.0e-09 67.4 34 76.5
Aa31LG1G7680 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.4e-09 67.0 45 60.0
Potri.005G082901 Populus trichocarpa HOM05D000451 ORTHO05D000351 1.4e-09 67.0 32 71.9
Sabra05G0075200 Salix brachista HOM05D000451 ORTHO05D000351 1.4e-09 67.0 32 75.0
Lsat_1_v5_gn_5_69560 Lactuca sativa HOM05D000451 ORTHO05D000351 1.8e-09 66.6 36 72.2
MBI03_g13818_MAGBIO Magnolia biondii HOM05D000451 ORTHO05D000351 1.8e-09 66.6 40 65.0
SEGI_14001 Sequoiadendron giganteum HOM05D000451 ORTHO05D000351 1.8e-09 66.6 63 50.8
ATR0618G076 Amborella trichopoda HOM05D000451 ORTHO05D000351 2.3e-09 66.2 60 51.7
CDE05G1883 Ceratophyllum demersum HOM05D000451 ORTHO05D000351 2.3e-09 66.2 37 73.0
Nitab4.5_0000035g0150 Nicotiana tabacum HOM05D000451 ORTHO05D000351 2.3e-09 66.2 60 56.7
Migut.A00948 Erythranthe guttata HOM05D000451 ORTHO05D000351 3.1e-09 65.9 67 49.3
Lsat_1_v5_gn_5_69640 Lactuca sativa HOM05D000451 ORTHO05D000351 3.1e-09 65.9 34 73.5
Lsat_1_v5_gn_5_71801 Lactuca sativa HOM05D000451 ORTHO05D000351 3.1e-09 65.9 34 76.5
Nitab4.5_0002269g0010 Nicotiana tabacum HOM05D000451 ORTHO05D000351 3.1e-09 65.9 60 50.0
SGA_v2.0_scaffold54G19554 Striga asiatica HOM05D000451 ORTHO05D000351 3.1e-09 65.9 46 63.0
Hma1.2p1_0988F.1_g244660 Hydrangea macrophylla HOM05D000451 ORTHO05D000351 4.0e-09 65.5 34 73.5
Hma1.2p1_0988F.1_g244665 Hydrangea macrophylla HOM05D000451 ORTHO05D000351 4.0e-09 65.5 34 73.5
Medtr1g114150 Medicago truncatula HOM05D000451 ORTHO05D000351 4.0e-09 65.5 34 73.5
Solyc08g065830.4 Solanum lycopersicum HOM05D000451 ORTHO05D051093 4.0e-09 65.5 48 62.5
Aa31LG5G18200 Aethionema arabicum HOM05D000451 ORTHO05D000351 5.2e-09 65.1 37 67.6
CiPaw.15G150500 Carya illinoinensis HOM05D000451 ORTHO05D000351 5.2e-09 65.1 34 73.5
Lsat_1_v5_gn_5_70140 Lactuca sativa HOM05D000451 ORTHO05D000351 5.2e-09 65.1 34 73.5
Sabra05G0068000 Salix brachista HOM05D000451 ORTHO05D000351 5.2e-09 65.1 32 68.8
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 6.8e-09 64.7 55 52.7
Duzib132G0245 Durio zibethinus HOM05D000451 ORTHO05D000351 6.8e-09 64.7 34 73.5
Oeu037886.1 Olea europaea HOM05D000451 ORTHO05D000351 6.8e-09 64.7 62 51.6
Thecc.02G157900 Theobroma cacao HOM05D000451 ORTHO05D000351 6.8e-09 64.7 34 73.5
CiPaw.16G099800 Carya illinoinensis HOM05D000451 ORTHO05D000351 8.9e-09 64.3 34 73.5
Rhsim05G0169300 Rhododendron simsii HOM05D000451 ORTHO05D000351 8.9e-09 64.3 34 73.5
TPR.G2415 Trifolium pratense HOM05D000451 ORTHO05D000351 8.9e-09 64.3 68 45.6
Actinidia03343 Actinidia chinensis HOM05D000451 ORTHO05D000351 1.2e-08 63.9 45 62.2
Glyma.19G068800 Glycine max HOM05D000451 ORTHO05D000351 1.2e-08 63.9 34 70.6
Medtr1g114070 Medicago truncatula HOM05D000451 ORTHO05D000351 1.2e-08 63.9 65 46.2
Oeu014707.2 Olea europaea HOM05D000451 ORTHO05D000351 1.2e-08 63.9 71 49.3
Haze_03469 Corylus avellana HOM05D000451 ORTHO05D000351 1.5e-08 63.5 34 70.6
DCAR_028451 Daucus carota HOM05D000451 ORTHO05D000351 1.5e-08 63.5 33 69.7
Psat6g233000 Pisum sativum HOM05D000451 ORTHO05D000351 1.5e-08 63.5 46 56.5
QL04p072824 Quercus lobata HOM05D000451 ORTHO05D000351 1.5e-08 63.5 34 73.5
TAR629G3409 Trochodendron aralioides HOM05D000451 ORTHO05D000351 1.5e-08 63.5 46 56.5
Nitab4.5_0000128g0150 Nicotiana tabacum HOM05D000451 ORTHO05D000351 2.0e-08 63.2 32 71.9
Phvul.007G016300 Phaseolus vulgaris HOM05D000451 ORTHO05D000351 2.0e-08 63.2 70 41.4
Sed0001028 Sechium edule HOM05D000451 ORTHO05D000351 2.0e-08 63.2 34 70.6
Sed0017533 Sechium edule HOM05D000451 ORTHO05D000351 2.0e-08 63.2 34 70.6
Sc14g0003100 Simmondsia chinensis HOM05D000451 ORTHO05D000351 2.0e-08 63.2 49 53.1
Thecc.07G183200 Theobroma cacao HOM05D000451 ORTHO05D000351 2.0e-08 63.2 34 70.6
GSVIVG01026208001 Vitis vinifera HOM05D000451 ORTHO05D000351 2.0e-08 63.2 34 70.6
Ah.01g001450 Amaranthus hybridus HOM05D000451 ORTHO05D000351 2.6e-08 62.8 34 67.6
Duzib128G1458 Durio zibethinus HOM05D000451 ORTHO05D000351 2.6e-08 62.8 61 50.8
Peaxi162Scf00090g00818 Petunia axillaris HOM05D000451 ORTHO05D000351 2.6e-08 62.8 60 53.3
Psat6g233400 Pisum sativum HOM05D000451 ORTHO05D000351 2.6e-08 62.8 61 45.9
PGR142G1486 Punica granatum HOM05D000451 ORTHO05D000351 2.6e-08 62.8 49 55.1
Rhsim09G0070900 Rhododendron simsii HOM05D000451 ORTHO05D000351 2.6e-08 62.8 35 65.7
EL10Ac9g22966 Beta vulgaris HOM05D000451 ORTHO05D000351 3.4e-08 62.4 34 67.6
HanXRQChr05g0137691 Helianthus annuus HOM05D000451 ORTHO05D000351 3.4e-08 62.4 56 50.0
Lsat_1_v5_gn_5_69780 Lactuca sativa HOM05D000451 ORTHO05D000351 3.4e-08 62.4 70 50.0
Rhsim02G0145800 Rhododendron simsii HOM05D000451 ORTHO05D000351 3.4e-08 62.4 32 68.8
Sopen04g018580 Solanum pennellii HOM05D000451 ORTHO05D000351 3.4e-08 62.4 71 42.3
EL10Ac9g22964 Beta vulgaris HOM05D000451 ORTHO05D000351 4.4e-08 62.0 34 67.6
ClCG01G008180 Citrullus lanatus HOM05D000451 ORTHO05D000351 4.4e-08 62.0 34 67.6
MELO3C025053.2 Cucumis melo HOM05D000451 ORTHO05D000351 4.4e-08 62.0 34 70.6
Migut.K01225 Erythranthe guttata HOM05D000451 ORTHO05D000351 4.4e-08 62.0 33 69.7
Lj5g0010085 Lotus japonicus HOM05D000451 ORTHO05D000351 4.4e-08 62.0 34 67.6
Hund08611 Selenicereus undatus HOM05D000451 ORTHO05D000351 4.4e-08 62.0 34 64.7
TWI38G0519 Tripterygium wilfordii HOM05D000451 ORTHO05D000351 4.4e-08 62.0 34 70.6
Cpa.g.sc707.1 Carica papaya HOM05D000451 ORTHO05D000351 5.8e-08 61.6 34 67.6
Cc07_g20150 Coffea canephora HOM05D000451 ORTHO05D000351 5.8e-08 61.6 34 67.6
MD06G1012500 Malus domestica HOM05D000451 ORTHO05D000351 5.8e-08 61.6 34 67.6
SHI30586 Sapria himalayana HOM05D000451 ORTHO05D000351 5.8e-08 61.6 33 69.7
Solyc04g049140.4 Solanum lycopersicum HOM05D000451 ORTHO05D000351 5.8e-08 61.6 71 42.3
VMungo0720G0380 Vigna mungo HOM05D000451 ORTHO05D000351 5.8e-08 61.6 47 55.3
arahy.Tifrunner.gnm1.ann1.1GV9MA Arachis hypogaea HOM05D000451 ORTHO05D000351 7.5e-08 61.2 34 67.6
CANSAT54G0887 Cannabis sativa HOM05D000451 ORTHO05D000351 7.5e-08 61.2 34 67.6
Duzib248G1089 Durio zibethinus HOM05D000451 ORTHO05D000351 7.5e-08 61.2 31 71.0
Migut.K01217 Erythranthe guttata HOM05D000451 ORTHO05D000351 7.5e-08 61.2 74 41.9
Eucgr.H00420 Eucalyptus grandis HOM05D000451 ORTHO05D000351 7.5e-08 61.2 50 48.0
Lj4A818T25 Lonicera japonica HOM05D000451 ORTHO05D000351 7.5e-08 61.2 39 66.7
Medtr5g065200 Medicago truncatula HOM05D000451 ORTHO05D000351 7.5e-08 61.2 34 70.6
RcHm_v2.0_Chr7g0215021 Rosa chinensis HOM05D000451 ORTHO05D000351 9.8e-08 60.8 34 67.6
TPR.G21299 Trifolium pratense HOM05D000451 ORTHO05D000351 9.8e-08 60.8 34 70.6
TPR.G4095 Trifolium pratense HOM05D000451 ORTHO05D000351 9.8e-08 60.8 67 40.3
arahy.Tifrunner.gnm1.ann1.9S6AA1 Arachis hypogaea HOM05D000451 ORTHO05D000351 1.3e-07 60.5 34 67.6
Ca_11217_v3 Cicer arietinum L. HOM05D000451 ORTHO05D000351 1.3e-07 60.5 34 70.6
Haze_25319 Corylus avellana HOM05D000451 ORTHO05D000351 1.3e-07 60.5 69 47.8
CsaV3_5G020020 Cucumis sativus L. HOM05D000451 ORTHO05D000351 1.3e-07 60.5 59 52.5
DCAR_017352 Daucus carota HOM05D000451 ORTHO05D000351 1.3e-07 60.5 50 52.0
ECA233G4511 Erigeron canadensis HOM05D000451 ORTHO05D000351 1.3e-07 60.5 34 70.6
Lalb_Chr06g0163841 Lupinus albus HOM05D000451 ORTHO05D000351 1.3e-07 60.5 32 71.9
CANSAT78G1853 Cannabis sativa HOM05D000451 ORTHO05D000351 1.7e-07 60.1 52 51.9
Migut.H00950 Erythranthe guttata HOM05D000451 ORTHO05D000351 1.7e-07 60.1 50 50.0
HanXRQChr14g0434421 Helianthus annuus HOM05D000451 ORTHO05D000351 1.7e-07 60.1 34 70.6
Lalb_Chr18g0049491 Lupinus albus HOM05D000451 ORTHO05D000351 1.7e-07 60.1 32 71.9
Lalb_Chr18g0049541 Lupinus albus HOM05D000451 ORTHO05D000351 1.7e-07 60.1 32 71.9
QL04p072951 Quercus lobata HOM05D000451 ORTHO05D000351 1.7e-07 60.1 79 36.7
TPR.G4023 Trifolium pratense HOM05D000451 ORTHO05D000351 1.7e-07 60.1 67 44.8
TAR371G0398 Trochodendron aralioides HOM05D000451 ORTHO05D000351 1.7e-07 60.1 34 67.6
arahy.Tifrunner.gnm1.ann1.991T1P Arachis hypogaea HOM05D000451 ORTHO05D000351 2.2e-07 59.7 34 67.6
Ciclev10030567m.g Citrus clementina HOM05D000451 ORTHO05D000351 2.2e-07 59.7 70 40.0
ECA233G1404 Erigeron canadensis HOM05D000451 ORTHO05D000351 2.2e-07 59.7 34 73.5
FvH4_5g24540 Fragaria vesca HOM05D000451 ORTHO05D000351 2.2e-07 59.7 34 67.6
FvH4_5g24640 Fragaria vesca HOM05D000451 ORTHO05D000351 2.2e-07 59.7 34 67.6
FAN13G2914 Fragaria x ananassa HOM05D000451 ORTHO05D000351 2.2e-07 59.7 34 67.6
SalBow6G1682 Salvia bowleyana HOM05D000451 ORTHO05D000351 2.2e-07 59.7 57 52.6
TWI38G0741 Tripterygium wilfordii HOM05D000451 ORTHO05D000351 2.2e-07 59.7 32 71.9
Ah.01g001430 Amaranthus hybridus HOM05D000451 ORTHO05D000351 2.9e-07 59.3 33 63.6
Carub.0003s0718 Capsella rubella HOM05D000451 ORTHO05D000351 2.9e-07 59.3 34 64.7
Lalb_Chr18g0049651 Lupinus albus HOM05D000451 ORTHO05D000351 2.9e-07 59.3 32 71.9
Mapoly0006s0033 Marchantia polymorpha HOM05D000451 ORTHO05D000351 2.9e-07 59.3 34 67.6
Medtr1g114130 Medicago truncatula HOM05D000451 ORTHO05D000351 2.9e-07 59.3 66 48.5
arahy.Tifrunner.gnm1.ann1.JYC97M Arachis hypogaea HOM05D000451 ORTHO05D000351 3.7e-07 58.9 34 67.6
EL10Ac9g22965 Beta vulgaris HOM05D000451 ORTHO05D000351 4.9e-07 58.5 33 60.6
Ah.11g048780 Amaranthus hybridus HOM05D000451 ORTHO05D000351 6.4e-07 58.2 52 51.9
AUR62017714 Chenopodium quinoa HOM05D000451 ORTHO05D000351 6.4e-07 58.2 34 58.8
AUR62032966 Chenopodium quinoa HOM05D000451 ORTHO05D000351 6.4e-07 58.2 34 58.8
DCAR_014072 Daucus carota HOM05D000451 ORTHO05D000351 6.4e-07 58.2 47 57.4
Migut.B01053 Erythranthe guttata HOM05D000451 ORTHO05D000351 6.4e-07 58.2 34 61.8
Migut.I00412 Erythranthe guttata HOM05D000451 ORTHO05D000351 6.4e-07 58.2 34 61.8
Glyma.20G104900 Glycine max HOM05D000451 ORTHO05D000351 6.4e-07 58.2 34 64.7
HanXRQChr15g0482601 Helianthus annuus HOM05D000451 ORTHO05D000351 6.4e-07 58.2 74 43.2
Sed0015995 Sechium edule HOM05D000451 ORTHO05D000351 6.4e-07 58.2 37 62.2
SEGI_01523 Sequoiadendron giganteum HOM05D000451 ORTHO05D000351 6.4e-07 58.2 40 60.0
HPP92_000141 Vanilla planifolia HOM05D000451 ORTHO05D000351 6.4e-07 58.2 62 45.2
Lj5g0013520 Lotus japonicus HOM05D000451 ORTHO05D000351 8.3e-07 57.8 34 67.6
Prupe.5G015100 Prunus persica HOM05D000451 ORTHO05D000351 8.3e-07 57.8 67 40.3
RcHm_v2.0_Chr7g0223931 Rosa chinensis HOM05D000451 ORTHO05D000351 8.3e-07 57.8 34 64.7
Glyma.10G284500 Glycine max HOM05D000451 ORTHO05D000351 1.1e-06 57.4 34 64.7
Gohir.D12G136900 Gossypium hirsutum HOM05D000451 ORTHO05D000351 1.1e-06 57.4 34 67.6
Gorai.008G148100 Gossypium raimondii HOM05D000451 ORTHO05D000351 1.1e-06 57.4 34 67.6
Pp3c14_6480 Physcomitrium patens HOM05D000451 ORTHO05D000351 1.1e-06 57.4 56 50.0
DCAR_010100 Daucus carota HOM05D000451 ORTHO05D000351 1.4e-06 57.0 46 50.0
FAN10G2516 Fragaria x ananassa HOM05D000451 ORTHO05D000351 1.4e-06 57.0 42 54.8
RcHm_v2.0_Chr7g0223871 Rosa chinensis HOM05D000451 ORTHO05D000351 1.4e-06 57.0 40 60.0
Aqoxy1G03777 Aquilegia oxysepala HOM05D000451 ORTHO05D000351 1.9e-06 56.6 34 70.6
Cc00_g07370 Coffea canephora HOM05D000451 ORTHO05D000351 1.9e-06 56.6 34 61.8
Manes.14G044400 Manihot esculenta HOM05D000451 ORTHO05D000351 1.9e-06 56.6 58 48.3
Pp3c17_5410 Physcomitrium patens HOM05D000451 ORTHO05D000351 1.9e-06 56.6 45 55.6
Sc12g0006150 Simmondsia chinensis HOM05D000451 ORTHO05D000351 1.9e-06 56.6 33 60.6
Atru.chr2.1718 Acer truncatum HOM05D000451 ORTHO05D000351 3.2e-06 55.8 35 62.9
Atru.chr2.1720 Acer truncatum HOM05D000451 ORTHO05D000351 3.2e-06 55.8 35 62.9
Atru.chr2.3630 Acer truncatum HOM05D000451 ORTHO05D000351 3.2e-06 55.8 35 62.9
Atru.chr2.3639 Acer truncatum HOM05D000451 ORTHO05D000351 3.2e-06 55.8 35 62.9
Lsat_1_v5_gn_5_69960 Lactuca sativa HOM05D000451 ORTHO05D000351 3.2e-06 55.8 51 45.1
Sp3g06550 Schrenkiella parvula HOM05D000451 ORTHO05D000351 3.2e-06 55.8 64 39.1
CDE11G0211 Ceratophyllum demersum HOM05D000451 ORTHO05D000351 4.1e-06 55.5 83 39.8
RcHm_v2.0_Chr3g0461961 Rosa chinensis HOM05D000451 ORTHO05D000351 4.1e-06 55.5 38 60.5
TAR374G0411 Trochodendron aralioides HOM05D000451 ORTHO05D000351 4.1e-06 55.5 67 38.8
EL10Ac5g10937 Beta vulgaris HOM05D000451 ORTHO05D000351 5.4e-06 55.1 50 44.0
AUR62021747 Chenopodium quinoa HOM05D000451 ORTHO05D000351 5.4e-06 55.1 50 46.0
RcHm_v2.0_Chr1g0359841 Rosa chinensis HOM05D000451 ORTHO05D000351 5.4e-06 55.1 43 55.8
SalBow1G7142 Salvia bowleyana HOM05D000451 ORTHO05D000351 5.4e-06 55.1 43 60.5
SEGI_12800 Sequoiadendron giganteum HOM05D000451 ORTHO05D000351 5.4e-06 55.1 36 66.7
Solyc09g091490.3 Solanum lycopersicum HOM05D000451 ORTHO05D000351 5.4e-06 55.1 34 64.7
Gohir.A12G133400 Gossypium hirsutum HOM05D000451 ORTHO05D000351 7.0e-06 54.7 67 47.8
RcHm_v2.0_Chr7g0223991 Rosa chinensis HOM05D000451 ORTHO05D000351 7.0e-06 54.7 31 61.3
Gohir.A03G165400 Gossypium hirsutum HOM05D000451 ORTHO05D000351 9.2e-06 54.3 31 61.3
Gohir.D02G188600 Gossypium hirsutum HOM05D000451 ORTHO05D000351 9.2e-06 54.3 31 61.3
Nn4g26688 Nelumbo nucifera HOM05D000451 ORTHO05D000351 9.2e-06 54.3 69 42.0


User provided reference genes

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