Gene: Solyc04g049140.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g049140.4
  • Transcript Identifier Solyc04g049140.4.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 39054261-39072483 : negative

Gene Family Information

  • ID HOM05D000451
  • #Genes/#Species 1160/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g049140.4.1
  • uniprot A0A3Q7G2Y9
  • gene_id Solyc04g049140

Descriptions

  • Description Transcription factor jumonji (JmjC) domain-containing protein (AHRD V3.3 *** Q8VYB9_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032776
ISO
PLAZA Integrative OrthologyDNA methylation on cytosine AT3G07610
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT3G07610
GO:0010468
ISO
PLAZA Integrative Orthologyregulation of gene expression AT3G07610
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT3G07610
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT3G07610
GO:0009908
ISO
PLAZA Integrative Orthologyflower development AT3G07610
GO:0060969
ISO
PLAZA Integrative Orthologynegative regulation of gene silencing AT3G07610
GO:0070919
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in chromatin silencing by small RNA AT3G07610
GO:0006357
IBA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0033169
IBA
IEA
GOA Databasehistone H3-K9 demethylation
GO:0033169
IEA
InterProhistone H3-K9 demethylation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003712
IBA
GOA Databasetranscription coregulator activity
GO:0032454
IBA
IEA
GOA Databasehistone demethylase activity (H3-K9 specific)
GO:0032454
IEA
InterProhistone demethylase activity (H3-K9 specific)
GO:0031490
IBA
GOA Databasechromatin DNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000118
IBA
GOA Databasehistone deacetylase complex
GO:0000785
IBA
GOA Databasechromatin

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR045109 Histone demethylase JHDM2-like
IPR003347 JmjC domain
Mapman id Description
12.3.3.8.1 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM3)