Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 0.0e+00 1269.2 707 100.0
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 0.0e+00 1151.0 707 89.1
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 0.0e+00 1123.6 707 88.3
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.6e-209 733.4 711 63.4
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 9.0e-208 727.6 714 61.5
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 2.9e-206 722.6 708 62.7
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 9.3e-205 717.6 706 60.5
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.2e-204 717.2 709 61.9
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.6e-204 716.8 704 61.5
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 4.5e-199 698.7 772 50.6
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 9.9e-199 697.6 708 59.7
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 1.7e-198 696.8 711 55.4
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 6.4e-198 694.9 704 60.5
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.1e-192 677.6 706 58.6
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.4e-192 677.2 704 59.1
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 3.4e-191 672.5 706 59.6
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 2.2e-190 669.8 708 57.6
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 1.2e-188 664.1 708 58.2
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 1.6e-188 663.7 712 58.1
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 3.5e-188 662.5 708 58.5
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 3.5e-188 662.5 704 58.5
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 6.7e-187 658.3 708 58.3
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 6.3e-185 651.7 711 57.9
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.8e-184 650.2 711 57.8
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 4.6e-180 635.6 708 56.6
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.3e-179 633.3 710 56.3
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.3e-179 633.3 708 57.8
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.9e-178 630.2 706 56.8
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.5e-178 629.8 707 55.6
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 2.5e-178 629.8 706 55.4
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 7.4e-178 628.2 711 55.8
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 7.4e-178 628.2 703 51.6
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 2.9e-174 616.3 709 55.6
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 8.5e-174 614.8 706 56.8
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.2e-173 612.5 709 56.3
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.6e-172 610.5 710 54.9
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 2.7e-172 609.8 631 61.0
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 2.7e-172 609.8 696 55.2
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.7e-172 609.0 706 55.5
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.4e-171 607.4 733 54.3
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.0e-171 606.3 709 55.7
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.9e-171 605.9 709 55.6
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 5.1e-171 605.5 708 55.5
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.0e-170 603.6 706 55.4
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.7e-169 599.4 706 55.2
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.8e-169 599.0 761 48.4
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.4e-168 597.4 710 54.9
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 3.1e-168 596.3 710 53.1
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 3.1e-168 596.3 631 58.3
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 4.5e-167 592.4 708 53.5
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 2.2e-166 590.1 706 55.2
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.4e-165 587.4 716 52.0
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 2.1e-164 583.6 742 51.5
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 3.6e-164 582.8 722 52.9
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.4e-163 580.9 708 54.8
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.4e-163 580.9 708 47.6
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 3.9e-163 579.3 706 54.2
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.1e-162 577.8 708 54.8
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 5.7e-162 575.5 725 53.5
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 6.3e-161 572.0 715 46.3
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 9.1e-160 568.2 704 53.6
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 5.9e-159 565.5 708 53.0
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.0e-158 564.7 708 47.3
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 5.0e-158 562.4 708 53.0
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 2.5e-157 560.1 672 53.4
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.5e-157 560.1 708 51.0
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 6.1e-156 555.4 706 52.7
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 3.0e-155 553.1 706 52.4
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.5e-154 550.8 706 53.0
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 4.4e-154 549.3 706 52.3
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.3e-153 545.4 526 55.3
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 2.4e-152 543.5 707 50.9
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 5.3e-152 542.3 706 51.8
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 7.0e-152 542.0 736 50.8
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.2e-151 541.2 706 53.0
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.5e-151 539.7 706 52.4
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 5.9e-151 538.9 710 50.0
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 3.2e-149 533.1 633 55.9
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 5.5e-149 532.3 742 48.2
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 1.4e-147 527.7 706 50.7
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.4e-147 527.7 706 51.4
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 3.0e-147 526.6 709 52.0
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.5e-146 524.2 711 49.1
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 2.0e-146 523.9 658 54.1
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.7e-145 520.8 706 51.8
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 3.8e-142 509.6 706 49.0
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 5.0e-142 509.2 706 49.0
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 6.6e-142 508.8 705 50.9
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.1e-141 508.1 705 50.2
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 3.3e-141 506.5 708 49.6
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 2.8e-140 503.4 707 51.3
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 2.8e-140 503.4 706 49.7
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 8.9e-139 498.4 708 49.3
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-138 498.0 708 49.7
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 1.2e-138 498.0 708 48.9
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 7.5e-138 495.4 705 49.8
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.1e-133 481.5 713 45.4
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.1e-133 481.5 533 50.3
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-132 476.9 518 60.0
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 5.8e-130 469.2 707 48.8
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.3e-126 458.0 712 40.2
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 2.1e-124 450.7 718 46.1
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.1e-124 450.7 516 57.2
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 2.1e-124 450.7 701 39.5
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 3.7e-121 439.9 709 46.8
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.9e-118 429.9 712 48.0
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.2e-114 418.3 711 36.7
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 9.9e-114 415.2 732 40.8
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.7e-113 413.3 732 39.6
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.1e-112 411.8 710 37.5
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 7.1e-112 409.1 578 50.0
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 4.6e-111 406.4 703 37.3
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.1e-109 401.7 483 58.2
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 1.0e-102 378.6 527 51.0
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 4.3e-101 373.2 629 47.2
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.6e-100 371.3 708 33.9
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 2.7e-95 354.0 317 58.0
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-91 341.3 490 42.4
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 1.8e-91 341.3 535 40.9
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.2e-88 330.5 480 42.3
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 1.5e-85 321.6 422 56.9
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.3e-84 318.5 533 41.1
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 8.2e-76 289.3 464 42.2
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 1.6e-71 275.0 362 42.8
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.3e-68 265.4 729 38.5
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.5e-66 258.5 268 53.4
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.2e-64 250.8 429 39.9
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 2.6e-58 231.1 256 64.8
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 5.0e-57 226.9 255 70.6
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 3.1e-51 207.6 279 41.2
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 8.8e-46 189.5 205 51.7
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 1.1e-45 189.1 715 30.8
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.2e-40 170.6 154 59.7
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 4.2e-40 170.6 194 46.9
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 1.0e-38 166.0 134 62.7
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 7.5e-37 159.8 544 28.7
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 2.7e-34 151.4 142 54.9
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 4.5e-34 150.6 259 39.4
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.7e-33 148.7 215 40.5
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 1.9e-32 145.2 577 26.3
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 6.1e-31 140.2 136 57.4
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 4.0e-30 137.5 123 56.9
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 6.6e-25 120.2 75 78.7
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-24 119.4 119 52.1
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-24 119.0 114 57.0
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-24 119.0 114 57.0
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.5e-24 119.0 109 55.0
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.2e-24 117.5 126 50.8
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.5e-24 117.1 114 55.3
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.7e-23 114.0 98 61.2
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.0e-23 113.2 114 54.4
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-22 112.8 96 62.5
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.4e-22 112.5 115 55.7
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-22 112.1 114 54.4
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.9e-22 109.8 114 54.4
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-21 109.4 114 53.5
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.2e-21 109.4 266 32.7
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 3.4e-21 107.8 133 50.4
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 2.2e-20 105.1 125 45.6
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 6.3e-20 103.6 126 46.0
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.4e-19 102.4 113 49.6
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 1.2e-18 99.4 162 39.5
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.5e-16 89.7 65 72.3
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-15 88.6 65 72.3
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-15 88.6 65 72.3
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-14 86.3 65 69.2
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-14 85.5 65 69.2
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.3e-14 85.1 65 69.2
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 6.8e-14 83.6 76 56.6
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 2.0e-13 82.0 64 56.2
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.9e-12 77.4 52 67.3
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 2.7e-10 71.6 131 38.2
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 2.7e-10 71.6 282 24.8
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 3.5e-10 71.2 54 55.6
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 5.0e-09 67.4 117 40.2
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 7.3e-08 63.5 259 23.9
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 7.3e-08 63.5 67 50.7
HanXRQChr11g0332681 Helianthus annuus HOM05D003682 ORTHO05D004224 3.6e-07 61.2 53 62.3
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.1e-06 59.7 72 48.6
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 4.0e-06 57.8 131 28.2
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 6.8e-06 57.0 30 80.0


User provided reference genes

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