Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 0.0e+00 1313.1 707 100.0
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 0.0e+00 1220.3 707 93.9
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 0.0e+00 1156.7 707 89.1
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.4e-213 746.9 704 61.9
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 9.3e-213 744.2 706 61.0
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 6.6e-211 738.0 714 61.6
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.4e-208 730.3 711 61.7
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.9e-206 722.6 709 60.8
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 6.4e-206 721.5 708 60.6
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.9e-205 719.9 772 51.9
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 9.3e-205 717.6 711 56.4
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 1.2e-204 717.2 704 60.5
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 3.5e-204 715.7 708 59.5
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.7e-201 705.7 704 59.5
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.2e-196 690.6 706 59.6
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 6.7e-195 684.9 708 58.2
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.5e-194 683.7 704 58.4
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 9.0e-192 674.5 708 57.3
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 9.0e-192 674.5 710 57.0
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.2e-191 674.1 708 57.9
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 5.8e-191 671.8 708 57.6
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.7e-190 670.2 706 57.4
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 6.0e-188 661.8 711 57.1
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.1e-186 657.5 706 56.9
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 5.7e-186 655.2 711 57.7
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.8e-185 652.9 707 56.4
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 2.4e-184 649.8 703 52.6
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 5.3e-184 648.7 708 55.9
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.5e-183 647.1 710 55.8
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 5.9e-183 645.2 711 56.4
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.0e-182 644.4 708 56.1
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 6.5e-182 641.7 707 55.3
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 3.2e-181 639.4 631 62.0
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 3.9e-179 632.5 709 55.3
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 7.4e-178 628.2 710 55.5
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 7.4e-178 628.2 706 55.9
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 2.2e-177 626.7 710 54.9
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-176 624.4 706 56.1
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.4e-176 623.2 733 53.9
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.4e-176 623.2 706 55.2
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 1.5e-175 620.5 706 56.7
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.6e-175 619.8 708 49.2
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.5e-175 619.0 761 48.1
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.9e-175 618.6 706 55.5
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 7.7e-175 618.2 706 55.4
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 7.7e-175 618.2 708 54.7
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.0e-174 617.8 706 55.1
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.7e-174 617.1 710 54.6
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 2.2e-174 616.7 696 54.3
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.2e-173 612.5 706 55.0
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.4e-171 607.4 716 52.9
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 3.9e-171 605.9 631 57.7
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 8.2e-169 598.2 708 52.0
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.1e-168 597.8 708 48.6
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.4e-168 597.4 710 47.3
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 2.4e-168 596.7 722 52.8
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 4.5e-167 592.4 706 53.8
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.7e-166 590.5 708 54.2
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.9e-166 589.7 725 52.8
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.4e-165 587.4 708 52.7
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 4.2e-165 585.9 742 51.1
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 4.2e-165 585.9 704 54.4
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 7.2e-165 585.1 708 54.0
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.8e-163 580.5 708 52.1
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 2.3e-163 580.1 706 53.5
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 5.7e-162 575.5 708 52.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 1.3e-161 574.3 710 52.3
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.7e-161 573.9 706 53.5
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 2.6e-159 566.6 672 52.7
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 3.5e-159 566.2 706 52.1
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 3.8e-158 562.8 706 51.7
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 3.8e-158 562.8 707 50.9
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 6.5e-158 562.0 742 50.1
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.5e-157 560.8 716 51.1
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.2e-156 557.8 706 52.1
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 2.7e-156 556.6 706 51.8
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 8.0e-156 555.1 706 52.3
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 8.0e-156 555.1 736 50.1
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.0e-155 554.7 706 52.3
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 2.8e-153 546.6 707 51.3
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 8.2e-153 545.0 707 51.3
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 2.4e-152 543.5 710 51.8
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 3.1e-152 543.1 658 53.6
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 4.1e-152 542.7 707 50.9
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 5.3e-152 542.3 707 52.2
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 1.0e-150 538.1 633 55.1
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.5e-149 534.3 705 51.5
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.2e-148 531.2 708 50.8
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.1e-148 528.9 526 54.6
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 8.8e-147 525.0 705 50.6
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.0e-146 523.9 708 50.6
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 2.0e-146 523.9 708 51.0
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 2.0e-146 523.9 709 50.5
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.7e-145 520.8 707 51.1
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.1e-144 518.1 704 49.7
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.8e-144 517.3 706 49.7
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.1e-140 502.3 518 62.2
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.5e-138 497.7 713 45.4
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 2.0e-138 497.3 707 49.5
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.3e-133 479.6 712 41.7
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.6e-132 476.5 694 40.9
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.4e-130 469.9 516 56.4
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 4.9e-129 466.1 718 46.0
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 3.5e-127 459.9 539 48.4
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 6.0e-127 459.1 709 46.8
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.3e-123 447.2 710 47.5
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 8.9e-123 445.3 703 39.8
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 7.5e-122 442.2 732 41.5
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 2.9e-121 440.3 578 52.8
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.1e-120 438.3 711 37.6
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 5.4e-120 436.0 732 41.4
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 4.6e-119 433.0 710 38.2
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 2.4e-112 410.6 470 58.1
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 4.1e-112 409.8 629 49.1
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 7.3e-109 399.1 708 35.0
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 6.2e-108 396.0 527 49.9
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-95 354.4 489 42.7
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 5.6e-93 346.3 317 56.5
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 4.5e-90 336.7 422 55.2
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.9e-90 335.5 477 43.8
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 6.4e-89 332.8 535 40.7
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 1.5e-82 311.6 464 42.2
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.8e-82 309.7 528 40.7
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.9e-77 294.7 729 38.4
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 1.3e-68 265.4 363 41.9
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 5.3e-67 260.0 255 72.9
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 5.9e-66 256.5 268 51.9
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 2.5e-64 251.1 277 61.0
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.5e-61 241.9 426 39.0
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.1e-51 209.1 281 44.5
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 5.3e-51 206.8 712 31.7
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 5.2e-46 190.3 198 53.5
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.1e-45 189.1 134 70.9
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 9.1e-43 179.5 580 28.1
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 4.0e-38 164.1 134 61.9
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 2.0e-37 161.8 542 30.1
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 3.4e-37 161.0 134 60.4
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.8e-36 157.1 154 55.2
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.1e-35 156.0 194 43.8
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 5.3e-35 153.7 235 39.6
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 3.2e-32 144.4 123 57.7
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 5.5e-32 143.7 141 51.8
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 7.2e-32 143.3 125 57.6
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.8e-30 138.7 109 61.5
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 3.0e-30 137.9 136 55.9
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.6e-29 134.8 98 69.4
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 7.5e-29 133.3 134 56.0
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 7.0e-27 126.7 131 51.1
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-25 122.1 96 64.6
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 5.0e-25 120.6 128 50.8
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-23 115.9 114 56.1
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-23 115.9 114 56.1
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.7e-23 114.0 114 54.4
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.3e-22 111.7 114 54.4
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-21 109.4 115 54.8
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-21 109.0 114 53.5
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 1.5e-21 109.0 74 73.0
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-21 107.8 114 53.5
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 4.4e-21 107.5 126 48.4
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.5e-21 106.7 114 53.5
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 7.5e-21 106.7 266 33.1
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 6.3e-20 103.6 162 39.5
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 3.5e-18 97.8 71 60.6
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.8e-14 83.6 65 66.2
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 1.5e-13 82.4 139 39.6
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-13 82.4 65 66.2
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-13 82.4 65 66.2
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 2.6e-13 81.6 76 55.3
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.4e-13 81.3 52 69.2
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.5e-13 80.1 65 63.1
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 7.5e-13 80.1 283 27.2
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-12 79.3 65 63.1
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-12 79.0 65 63.1
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 3.7e-12 77.8 117 43.6
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 1.4e-11 75.9 259 27.8
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 4.6e-10 70.9 54 55.6
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 7.8e-10 70.1 39 76.9
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 7.8e-10 70.1 127 33.1
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 9.5e-08 63.2 70 50.0
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.6e-07 62.4 72 50.0
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 1.6e-07 62.4 67 49.3
HanXRQChr11g0332681 Helianthus annuus HOM05D003682 ORTHO05D004224 4.7e-07 60.8 53 58.5
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.0e-06 57.8 39 61.5
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 4.0e-06 57.8 39 61.5


User provided reference genes

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