Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 2.2e-35 151.8 75 100.0
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 2.0e-12 75.5 43 76.7
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 2.6e-12 75.1 43 74.4
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 2.6e-12 75.1 43 74.4
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 7.5e-12 73.6 43 74.4
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 2.2e-11 72.0 43 72.1
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 2.8e-11 71.6 43 74.4
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 2.8e-11 71.6 43 74.4
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 6.3e-11 70.5 43 74.4
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 6.3e-11 70.5 43 72.1
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 1.8e-10 68.9 43 69.8
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 1.8e-10 68.9 59 54.2
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.8e-10 68.9 43 74.4
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.4e-10 68.6 43 67.4
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.4e-10 68.6 43 67.4
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.4e-10 68.6 43 67.4
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 2.4e-10 68.6 42 71.4
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 2.4e-10 68.6 42 71.4
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 2.4e-10 68.6 43 69.8
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 2.4e-10 68.6 43 69.8
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 2.4e-10 68.6 42 71.4
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 4.1e-10 67.8 42 66.7
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.1e-10 67.8 43 72.1
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 5.3e-10 67.4 43 72.1
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 5.3e-10 67.4 43 69.8
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 7.0e-10 67.0 43 72.1
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 7.0e-10 67.0 43 72.1
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 7.0e-10 67.0 43 67.4
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 7.0e-10 67.0 42 69.0
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 9.1e-10 66.6 43 67.4
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 9.1e-10 66.6 43 67.4
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 9.1e-10 66.6 43 72.1
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 1.2e-09 66.2 43 67.4
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 1.2e-09 66.2 43 67.4
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.6e-09 65.9 46 69.6
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.6e-09 65.9 53 58.5
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 1.6e-09 65.9 43 65.1
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.6e-09 65.9 43 69.8
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 2.0e-09 65.5 43 67.4
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 2.0e-09 65.5 42 71.4
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 3.5e-09 64.7 43 65.1
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 3.5e-09 64.7 43 67.4
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 4.5e-09 64.3 43 62.8
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 5.9e-09 63.9 43 69.8
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 5.9e-09 63.9 44 70.5
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 5.9e-09 63.9 43 65.1
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 5.9e-09 63.9 43 62.8
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 7.7e-09 63.5 43 62.8
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 7.7e-09 63.5 43 67.4
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 7.7e-09 63.5 43 67.4
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.7e-09 63.5 43 72.1
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.7e-09 63.5 43 72.1
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 1.0e-08 63.2 43 62.8
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 1.0e-08 63.2 43 65.1
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 1.0e-08 63.2 43 62.8
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 1.0e-08 63.2 43 62.8
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 1.0e-08 63.2 43 62.8
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 1.0e-08 63.2 43 65.1
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 1.0e-08 63.2 43 67.4
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.0e-08 63.2 42 64.3
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.3e-08 62.8 43 65.1
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 1.3e-08 62.8 43 69.8
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 1.3e-08 62.8 49 57.1
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.3e-08 62.8 49 57.1
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.7e-08 62.4 42 59.5
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.7e-08 62.4 43 62.8
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 2.2e-08 62.0 43 65.1
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.9e-08 61.6 42 66.7
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.9e-08 61.6 42 66.7
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 2.9e-08 61.6 42 66.7
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.8e-08 61.2 42 64.3
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 5.0e-08 60.8 48 58.3
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 8.5e-08 60.1 43 62.8
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.1e-07 59.7 49 55.1
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 1.9e-07 58.9 43 62.8
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 1.9e-07 58.9 43 62.8
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 1.9e-07 58.9 43 67.4
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 3.2e-07 58.2 42 59.5
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 7.2e-07 57.0 43 58.1
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 9.4e-07 56.6 53 52.8
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 9.4e-07 56.6 40 60.0
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 9.4e-07 56.6 42 57.1
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 1.2e-06 56.2 43 60.5
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 2.1e-06 55.5 43 62.8
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 2.7e-06 55.1 42 59.5
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 2.7e-06 55.1 59 49.2
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 3.6e-06 54.7 43 60.5
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 3.6e-06 54.7 57 50.9
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 4.7e-06 54.3 35 65.7
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 6.1e-06 53.9 32 75.0
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 8.0e-06 53.5 52 44.2
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 8.0e-06 53.5 43 51.2


User provided reference genes

Program Settings