Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 3095.1 1590 100.0
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1591.2 1817 52.0
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1586.2 1826 51.5
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1424.8 1875 47.9
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1400.2 1771 47.7
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1397.1 1838 47.6
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 1349.7 1812 45.5
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1341.3 1815 46.4
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 1337.8 1810 46.3
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1337.0 1807 45.7
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1297.3 1093 68.2
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1281.5 1784 46.6
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1272.3 1768 44.1
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 1270.0 1800 43.0
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1260.4 1803 43.5
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1239.9 1813 43.6
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1215.3 1815 43.3
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1208.0 1797 42.3
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1202.6 1809 42.1
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1198.0 1811 43.1
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1194.9 1814 42.2
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1178.7 1796 42.1
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1175.6 1757 42.6
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1172.5 1789 41.5
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1171.8 1818 40.8
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1166.0 1801 41.9
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1165.2 1790 41.9
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1164.8 1766 41.9
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1162.1 1790 41.8
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1152.1 1809 40.4
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1149.4 1801 41.0
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1149.0 1787 40.9
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1141.7 1796 40.6
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1141.3 1801 40.5
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1137.9 1733 42.6
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1126.7 1855 39.6
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1115.9 1729 42.3
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1114.4 1953 39.0
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1112.1 1716 42.3
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1111.3 1558 44.7
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1111.3 1799 40.8
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1110.9 1866 40.5
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1094.7 1805 38.8
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1089.7 1846 40.1
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1076.2 1800 39.2
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 2.6e-308 1062.8 1734 39.9
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 4.2e-306 1055.4 1837 38.7
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 2.7e-305 1052.7 1735 39.4
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 4.7e-305 1052.0 1840 38.4
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 8.2e-302 1041.2 1726 40.3
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 1.8e-301 1040.0 1838 38.4
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 3.1e-301 1039.3 1724 39.6
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.0e-300 1036.6 1769 40.0
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 3.5e-300 1035.8 1799 38.7
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 1.7e-299 1033.5 1796 38.0
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 2.2e-299 1033.1 1797 38.3
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 2.9e-299 1032.7 1811 38.0
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 1.9e-298 1030.0 1803 38.4
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 4.2e-298 1028.9 1822 36.8
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 1.6e-297 1026.9 1791 38.5
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 4.7e-297 1025.4 1806 37.9
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 6.3e-294 1015.0 1831 37.5
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 5.4e-293 1011.9 1798 37.7
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 6.5e-291 1005.0 1787 38.7
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 6.5e-291 1005.0 1788 38.5
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 7.2e-290 1001.5 1654 39.9
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 6.8e-288 995.0 1806 38.4
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 1.5e-287 993.8 1787 38.9
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.5e-287 993.8 1693 39.2
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.4e-285 986.5 913 61.0
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 7.8e-284 981.5 1782 37.7
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 3.8e-283 979.2 1451 42.7
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 1.3e-278 964.1 1814 36.5
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 2.2e-278 963.4 1806 36.9
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.3e-275 953.4 1803 36.6
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 6.6e-275 951.8 1806 36.5
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 2.3e-264 916.8 1805 35.6
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 3.3e-258 896.3 1830 34.8
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 2.0e-255 887.1 1823 34.9
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 2.2e-254 883.6 1807 35.4
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 1.7e-251 874.0 1648 36.1
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 6.6e-251 872.1 1827 34.8
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 9.6e-250 868.2 1778 35.6
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 1.4e-248 864.4 1512 38.8
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 2.6e-247 860.1 1784 35.2
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 9.9e-247 858.2 1862 34.0
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 2.2e-246 857.1 1860 34.2
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 6.0e-244 849.0 1788 34.5
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 5.1e-243 845.9 1775 34.8
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.6e-236 822.8 1693 35.2
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 2.3e-235 820.5 1765 34.0
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 3.1e-224 783.5 1812 33.2
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 1.4e-208 731.5 1251 39.3
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.5e-207 728.0 817 50.7
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.2e-199 701.8 1482 34.3
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.3e-194 683.7 1141 39.1
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 9.1e-192 675.6 1332 35.7
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 6.3e-177 626.3 1154 37.1
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 3.8e-174 617.1 1221 35.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.0e-167 594.7 1146 38.7
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 2.4e-152 544.7 1283 32.7
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 4.7e-148 530.4 993 36.4
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 6.8e-139 500.0 552 52.5
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 2.4e-136 491.5 787 40.4
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 7.1e-136 490.0 400 65.8
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.2e-127 462.6 941 34.6
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 3.9e-126 457.6 538 49.1
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.1e-99 369.8 1027 30.0
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 5.9e-98 364.0 1215 27.3
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 4.6e-95 354.4 495 42.6
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 8.8e-86 323.6 1330 25.9
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 2.0e-85 322.4 1292 25.5
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 8.8e-78 297.0 234 70.9
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.3e-73 283.1 1190 25.8
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.7e-68 266.2 864 28.5
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 1.9e-56 226.1 344 39.5
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 5.2e-54 218.0 183 59.0
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 6.3e-52 211.1 419 32.7
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 4.6e-42 178.3 237 46.0
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 5.0e-41 174.9 346 35.0
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.6e-37 162.5 333 37.8
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.7e-33 149.8 245 42.9
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 8.6e-33 147.5 123 61.0
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 9.5e-32 144.1 146 50.7
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 1.6e-31 143.3 197 44.7
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 5.2e-30 138.3 340 35.9
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 1.6e-26 126.7 227 39.6
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 1.9e-24 119.8 395 24.6
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 9.6e-24 117.5 204 40.7
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 8.9e-22 110.9 327 30.3
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 2.6e-21 109.4 169 40.8
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 7.6e-21 107.8 128 44.5
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.4e-19 102.8 72 68.1
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 3.2e-19 102.4 92 54.3
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 3.2e-19 102.4 414 25.6
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 3.2e-19 102.4 414 25.6
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 2.8e-15 89.4 154 39.6
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.8e-14 86.7 255 28.6
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 3.1e-14 85.9 101 46.5
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 6.9e-14 84.7 146 34.9
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 3.8e-12 79.0 136 41.2
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.2e-10 73.9 72 55.6
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 3.5e-10 72.4 69 47.8
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 8.7e-09 67.8 227 25.6
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 2.5e-08 66.2 119 35.3
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 5.3e-06 58.5 213 29.1
BraA10t45354Z Brassica rapa HOM05D003876 ORTHO05D043045 6.9e-06 58.2 105 37.1


User provided reference genes

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