Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 2.2e-88 328.9 166 100.0
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 3.2e-79 298.5 234 70.9
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 1.8e-58 229.6 234 53.0
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 3.8e-56 221.9 234 53.4
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 1.1e-55 220.3 234 53.0
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 3.3e-52 208.8 234 51.7
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 7.3e-52 207.6 166 65.1
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 2.1e-51 206.1 275 44.7
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 2.2e-48 196.1 246 47.6
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 1.1e-47 193.7 234 47.0
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 1.2e-46 190.3 234 46.2
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 1.6e-46 189.9 234 46.2
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 3.5e-46 188.7 234 48.3
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 3.5e-46 188.7 234 46.6
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 3.9e-45 185.3 234 49.6
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 5.1e-45 184.9 233 44.6
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 5.1e-45 184.9 233 47.2
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 6.6e-45 184.5 233 44.6
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 8.7e-45 184.1 215 49.8
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 1.1e-44 183.7 232 44.4
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 1.5e-44 183.3 233 43.8
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 1.9e-44 183.0 234 44.9
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 4.3e-44 181.8 234 45.7
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 4.3e-44 181.8 233 44.6
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 7.3e-44 181.0 234 46.6
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 7.3e-44 181.0 233 44.2
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 9.6e-44 180.6 233 44.2
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 1.3e-43 180.3 220 47.3
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 4.8e-43 178.3 233 43.8
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 1.1e-42 177.2 232 43.1
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 1.1e-42 177.2 233 44.2
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.4e-42 176.8 233 43.3
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 1.8e-42 176.4 233 45.1
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 3.1e-42 175.6 234 43.6
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 3.1e-42 175.6 120 71.7
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 4.0e-42 175.3 233 45.9
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 9.0e-42 174.1 234 46.2
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 1.5e-41 173.3 233 44.2
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.0e-41 172.9 233 43.3
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 1.3e-40 170.2 123 65.9
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 1.7e-40 169.9 234 43.2
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 2.2e-40 169.5 234 44.0
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 2.9e-40 169.1 234 44.0
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.9e-40 169.1 234 43.6
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 3.8e-40 168.7 232 40.5
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 3.8e-40 168.7 233 42.1
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 3.8e-40 168.7 233 42.1
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 4.9e-40 168.3 234 41.9
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 4.9e-40 168.3 233 42.5
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 4.9e-40 168.3 234 43.6
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 8.4e-40 167.5 234 41.5
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 8.4e-40 167.5 209 45.0
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 2.4e-39 166.0 233 42.9
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 4.2e-39 165.2 199 50.8
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 7.1e-39 164.5 123 66.7
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 1.2e-38 163.7 209 44.0
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 1.2e-38 163.7 208 44.2
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.1e-38 162.9 122 65.6
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 2.7e-38 162.5 209 43.5
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 4.6e-38 161.8 231 41.1
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 4.6e-38 161.8 230 40.9
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 4.6e-38 161.8 234 42.7
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 6.0e-38 161.4 209 43.5
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 1.0e-37 160.6 213 43.2
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 3.0e-37 159.1 211 44.5
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 3.9e-37 158.7 232 39.7
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 5.1e-37 158.3 213 42.7
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 1.9e-36 156.4 230 40.4
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 2.5e-36 156.0 221 40.3
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 3.3e-36 155.6 234 40.6
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.3e-36 155.2 213 42.3
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 5.6e-36 154.8 234 41.0
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 5.6e-36 154.8 234 41.0
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 2.1e-35 152.9 231 39.4
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.8e-35 152.5 223 40.8
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 4.8e-35 151.8 231 39.8
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 6.2e-35 151.4 232 44.0
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 1.1e-34 150.6 253 37.5
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 3.1e-34 149.1 241 38.2
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 3.1e-34 149.1 214 42.5
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 5.3e-34 148.3 234 40.2
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 5.3e-34 148.3 232 40.1
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 5.3e-34 148.3 232 40.1
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 5.3e-34 148.3 235 39.6
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 6.9e-34 147.9 231 39.8
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 9.0e-34 147.5 120 61.7
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 9.0e-34 147.5 244 37.3
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 2.0e-33 146.4 214 38.8
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.6e-33 146.0 182 48.9
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.4e-33 145.6 235 37.0
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 1.3e-32 143.7 231 37.7
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 2.2e-32 142.9 138 53.6
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 8.4e-32 141.0 213 39.0
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 4.2e-31 138.7 235 38.3
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 2.1e-30 136.3 260 33.1
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 3.5e-30 135.6 213 38.5
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.3e-29 132.9 195 39.5
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 8.7e-29 131.0 211 39.8
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 7.4e-28 127.9 246 33.7
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 2.8e-27 125.9 207 38.6
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 2.6e-25 119.4 196 41.8
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.9e-24 115.9 208 34.6
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 3.5e-22 109.0 176 39.8
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 6.7e-21 104.8 168 38.1
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 1.8e-18 96.7 207 33.8
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 1.8e-18 96.7 217 30.4
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 5.3e-18 95.1 177 36.2
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 6.9e-18 94.7 146 39.7
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 2.6e-17 92.8 98 51.0
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 2.6e-17 92.8 98 51.0
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 2.2e-16 89.7 207 28.5
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 9.4e-15 84.3 77 57.1
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 1.1e-10 70.9 100 37.0
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.4e-10 70.5 45 75.6
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 1.9e-07 60.1 43 67.4
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 4.2e-07 58.9 45 60.0
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 5.5e-07 58.5 45 64.4


User provided reference genes

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