Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 0.0e+00 1409.0 718 100.0
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 4.9e-312 1074.3 696 79.2
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 2.0e-311 1072.0 698 77.5
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 2.0e-311 1072.0 699 79.0
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.0e-307 1059.7 701 77.5
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 8.6e-307 1056.6 699 78.1
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 2.5e-306 1055.0 707 76.7
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 2.1e-305 1052.0 701 76.6
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 5.2e-304 1047.3 698 76.6
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 5.7e-303 1043.9 701 76.2
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 1.3e-302 1042.7 700 76.9
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 1.3e-302 1042.7 700 76.6
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 6.4e-302 1040.4 699 77.3
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 8.3e-302 1040.0 694 76.5
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 3.2e-301 1038.1 694 76.5
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 5.4e-301 1037.3 697 77.2
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 7.0e-301 1036.9 697 76.3
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.6e-300 1035.8 699 76.1
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 2.7e-300 1035.0 698 76.2
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 4.6e-300 1034.2 696 74.9
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 1.3e-299 1032.7 699 75.8
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 1.7e-299 1032.3 699 75.4
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 1.7e-299 1032.3 709 75.2
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 3.9e-299 1031.2 698 75.6
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 5.0e-299 1030.8 707 75.1
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 6.6e-299 1030.4 696 74.9
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.1e-298 1029.6 698 76.5
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.9e-298 1028.9 741 72.9
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 2.5e-298 1028.5 701 75.5
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 3.3e-298 1028.1 694 76.8
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 4.3e-298 1027.7 701 75.5
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 5.6e-298 1027.3 701 75.3
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 3.6e-297 1024.6 695 76.4
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 3.6e-297 1024.6 697 76.6
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 1.4e-296 1022.7 696 75.4
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 2.3e-296 1021.9 697 77.3
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 3.1e-296 1021.5 699 76.1
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 1.2e-295 1019.6 722 73.8
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 3.4e-295 1018.1 697 74.2
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 3.4e-295 1018.1 697 76.3
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 1.3e-294 1016.1 701 74.8
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 1.7e-294 1015.8 697 75.8
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 2.9e-294 1015.0 694 75.1
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 3.7e-294 1014.6 708 74.7
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 1.4e-293 1012.7 703 73.8
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 1.4e-293 1012.7 707 74.4
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 2.4e-293 1011.9 683 77.5
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 2.4e-293 1011.9 697 73.2
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 2.4e-293 1011.9 661 78.5
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 5.4e-293 1010.7 696 72.8
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 7.8e-292 1006.9 696 72.7
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 5.6e-290 1000.7 698 74.1
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 7.3e-290 1000.3 697 74.0
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 9.5e-290 1000.0 700 73.6
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 6.2e-289 997.3 701 73.5
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.1e-288 996.5 702 75.4
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.4e-288 996.1 721 71.8
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 4.0e-288 994.6 700 73.6
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 6.8e-288 993.8 701 72.9
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 5.8e-287 990.7 700 74.6
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 7.5e-287 990.3 695 73.5
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 4.9e-286 987.6 707 72.3
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 7.1e-285 983.8 703 72.7
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 7.1e-285 983.8 741 69.0
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 1.2e-284 983.0 707 73.1
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 1.6e-284 982.6 696 71.7
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 2.1e-284 982.2 704 73.4
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 2.7e-284 981.9 699 72.1
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 4.6e-284 981.1 730 70.1
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 1.7e-283 979.2 679 74.4
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 3.0e-283 978.4 709 72.8
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.6e-281 972.6 710 73.7
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 6.2e-281 970.7 641 76.8
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 1.2e-279 966.5 703 72.1
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 4.4e-279 964.5 702 71.2
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 5.8e-279 964.1 698 72.6
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 6.4e-278 960.7 703 71.4
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 1.1e-277 959.9 698 72.3
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 3.5e-276 954.9 700 71.7
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 1.3e-275 953.0 700 71.4
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 3.0e-275 951.8 694 71.6
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 3.9e-275 951.4 700 71.3
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 3.3e-274 948.3 703 71.3
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.2e-273 946.4 702 72.4
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 8.1e-273 943.7 700 70.1
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 4.4e-271 937.9 701 72.5
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 4.6e-268 927.9 667 72.6
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 1.4e-264 916.4 653 73.2
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 6.9e-264 914.1 643 75.9
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 3.2e-261 905.2 700 68.6
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 3.2e-253 878.6 701 67.6
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 6.2e-249 864.4 795 59.4
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 3.0e-243 845.5 524 81.3
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 7.9e-236 820.8 704 61.9
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 3.0e-235 818.9 696 61.4
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 4.8e-233 811.6 700 63.1
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 3.8e-230 802.0 488 83.4
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.2e-210 737.3 522 74.1
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 1.7e-209 733.4 517 73.5
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 7.2e-205 718.0 565 66.4
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.5e-197 693.0 518 71.4
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 2.0e-178 630.2 607 56.3
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.6e-164 583.9 651 53.0
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 1.9e-157 560.5 412 70.1
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 7.1e-152 542.0 369 76.2
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 6.6e-150 535.4 386 70.5
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 6.4e-145 518.8 391 68.8
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.6e-135 487.6 381 66.1
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 1.5e-133 481.1 388 62.6
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 1.5e-133 481.1 387 62.0
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 4.0e-131 473.0 369 67.2
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.5e-130 469.5 369 66.9
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 2.1e-127 460.7 361 65.4
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 1.1e-115 421.8 502 50.2
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 1.9e-96 357.8 210 83.8
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 8.2e-92 342.4 245 73.5
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 4.1e-91 340.1 261 71.3
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 8.9e-78 295.8 308 57.8
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 1.7e-68 265.0 230 63.0
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 6.6e-65 253.1 160 79.4
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 8.9e-62 242.7 162 73.5
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 2.1e-58 231.5 142 80.3
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 7.8e-58 229.6 344 42.2
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 1.4e-54 218.8 125 88.0
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 2.3e-54 218.0 156 71.2
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 1.9e-51 208.4 212 55.2
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.7e-44 185.3 117 76.9
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.4e-43 181.4 157 59.2
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 1.6e-42 178.7 95 89.5
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.1e-40 172.6 140 61.4
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 6.9e-38 163.3 128 67.2
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 5.8e-37 160.2 93 83.9
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 5.4e-35 153.7 296 35.5
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 1.6e-34 152.1 135 63.0
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 1.2e-29 136.0 93 73.1
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 1.6e-26 125.6 113 58.4
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.8e-25 122.1 92 69.6
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 2.0e-21 108.6 132 45.5
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 2.4e-19 101.7 71 70.4
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.8e-17 95.5 58 74.1
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 1.1e-16 92.8 53 88.7
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.9e-16 92.0 58 70.7
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 2.5e-16 91.7 96 52.1
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 2.8e-15 88.2 52 84.6
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 3.1e-14 84.7 79 58.2
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 3.1e-14 84.7 124 38.7
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 5.3e-14 84.0 52 80.8
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 1.4e-11 75.9 73 60.3
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 3.5e-10 71.2 44 79.5
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 2.5e-08 65.1 36 88.9
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 1.6e-07 62.4 52 65.4


User provided reference genes

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