Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 3.7e-92 343.2 179 100.0
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 2.8e-79 300.4 174 87.9
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 2.8e-79 300.4 174 87.9
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 2.3e-78 297.4 171 88.9
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 8.9e-78 295.4 175 85.7
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 1.2e-77 295.0 177 85.3
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 4.4e-77 293.1 175 85.7
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 2.4e-75 287.3 175 82.3
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 3.1e-75 287.0 174 82.8
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 9.2e-75 285.4 175 82.3
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 2.0e-74 284.3 175 81.1
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 4.5e-74 283.1 175 81.7
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 7.8e-74 282.3 172 83.1
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 7.8e-74 282.3 172 83.1
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 2.3e-73 280.8 175 80.0
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 2.9e-73 280.4 172 81.4
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 5.0e-73 279.6 178 79.8
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 2.5e-72 277.3 171 82.5
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 7.3e-72 275.8 175 80.0
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 9.5e-72 275.4 178 80.3
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 9.5e-72 275.4 171 82.5
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 1.6e-71 274.6 175 78.3
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 2.8e-71 273.9 175 77.1
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 4.7e-71 273.1 175 79.4
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 8.0e-71 272.3 174 80.5
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 8.0e-71 272.3 174 79.3
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 1.0e-70 271.9 173 77.5
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 1.0e-70 271.9 174 78.2
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 2.3e-70 270.8 172 77.3
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 3.1e-70 270.4 178 77.0
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 4.0e-70 270.0 172 76.7
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 5.2e-70 269.6 178 74.2
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 6.8e-70 269.2 174 79.3
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 8.9e-70 268.9 172 80.8
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.5e-69 268.1 177 76.8
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 1.5e-69 268.1 174 77.6
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.5e-69 268.1 173 80.3
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 4.4e-69 266.5 176 74.4
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 5.8e-69 266.2 171 79.5
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 5.8e-69 266.2 169 79.3
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 7.5e-69 265.8 173 79.8
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 9.8e-69 265.4 173 80.3
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 1.7e-68 264.6 174 77.0
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 1.7e-68 264.6 176 74.4
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 2.9e-68 263.8 178 75.3
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.9e-68 263.8 173 79.2
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.1e-67 261.9 171 78.9
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.1e-67 261.9 171 78.9
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 1.1e-67 261.9 172 78.5
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 1.1e-67 261.9 171 77.2
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 1.4e-67 261.5 169 75.1
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 1.4e-67 261.5 175 75.4
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 2.4e-67 260.8 174 76.4
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 2.4e-67 260.8 174 77.0
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 2.4e-67 260.8 156 84.6
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 7.0e-67 259.2 173 78.0
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 1.6e-66 258.1 170 78.2
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 4.6e-66 256.5 173 74.6
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 7.8e-66 255.8 174 74.7
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 1.0e-65 255.4 171 75.4
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.3e-65 255.0 175 72.0
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 1.7e-65 254.6 178 73.0
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 3.9e-65 253.4 164 75.6
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 8.6e-65 252.3 171 75.4
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 5.6e-64 249.6 160 80.0
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 5.6e-64 249.6 160 80.0
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 1.6e-63 248.1 161 76.4
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 2.1e-63 247.7 165 75.8
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 2.8e-63 247.3 159 76.1
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 2.8e-63 247.3 174 70.1
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 1.1e-62 245.4 178 69.7
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 1.8e-62 244.6 161 75.2
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 2.3e-62 244.2 175 68.6
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 8.9e-62 242.3 158 74.7
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 1.2e-61 241.9 159 77.4
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 1.5e-61 241.5 159 77.4
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 3.4e-61 240.4 154 78.6
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 4.4e-61 240.0 156 78.2
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 1.3e-60 238.4 154 77.3
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 1.7e-60 238.0 154 77.9
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 2.2e-60 237.7 152 79.6
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 2.2e-60 237.7 152 79.6
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 2.2e-60 237.7 178 68.5
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 2.9e-60 237.3 153 77.1
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 2.9e-60 237.3 156 76.9
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 2.9e-60 237.3 156 76.9
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 2.9e-60 237.3 156 76.9
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 2.9e-60 237.3 156 76.9
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 2.9e-60 237.3 156 76.9
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 2.9e-60 237.3 154 77.3
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 3.7e-60 236.9 161 74.5
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 3.7e-60 236.9 156 76.9
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 4.9e-60 236.5 153 79.1
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 1.9e-59 234.6 157 77.7
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 3.5e-58 230.3 175 69.1
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 7.8e-58 229.2 160 73.1
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 1.0e-57 228.8 151 76.2
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 1.4e-54 218.4 176 61.4
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.8e-54 218.0 153 71.2
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.3e-52 211.8 173 63.6
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 3.1e-30 137.5 179 49.2
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 1.2e-29 135.6 180 43.3
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 2.6e-29 134.4 166 46.4
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 3.4e-29 134.0 85 83.5
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 2.9e-28 131.0 176 40.3
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 7.1e-27 126.3 132 48.5
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 1.1e-19 102.4 95 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 5.1e-17 93.6 135 35.6
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 1.8e-14 85.1 136 33.1
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.9e-12 77.8 44 81.8
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 8.4e-12 76.3 44 81.8
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 8.4e-12 76.3 44 81.8
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 5.5e-11 73.6 44 77.3
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 7.1e-11 73.2 43 79.1
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 9.3e-11 72.8 177 32.2
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 3.0e-09 67.8 52 67.3
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 1.1e-08 65.9 44 70.5
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 2.5e-08 64.7 179 31.8
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 1.1e-06 59.3 36 77.8
Sed0014352 Sechium edule HOM05D006705 ORTHO05D008179 5.3e-06 57.0 43 62.8


User provided reference genes

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