Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 2064.3 1064 100.0
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1821.6 1067 86.7
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1817.4 1068 86.4
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1817.4 1078 86.4
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1800.8 1076 86.8
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1692.6 947 89.2
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1680.6 998 84.8
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1670.2 1079 77.5
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1657.5 1071 78.2
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1640.2 1078 76.2
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1639.0 1081 76.0
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1638.6 1074 76.1
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1634.0 1077 76.6
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1627.5 1007 79.6
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1626.7 1078 76.9
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1623.2 1073 76.4
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1622.4 1074 77.0
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1620.1 1082 75.1
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1618.6 1067 76.2
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1618.2 1074 76.8
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1618.2 1076 75.7
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1613.6 1074 75.5
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1608.2 1119 73.6
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1602.8 1090 74.1
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1601.6 1078 74.5
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1598.2 1081 74.5
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1578.9 1078 72.6
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1577.8 1072 74.5
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1577.4 1076 72.5
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1577.0 1070 72.7
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1576.6 1074 74.8
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1576.6 1081 73.2
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1572.4 1072 74.2
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1568.1 1076 73.2
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1565.8 1072 74.3
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1564.3 1095 73.9
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1563.9 1076 72.4
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1562.4 1076 72.0
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1561.6 1067 75.0
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1560.0 1076 72.1
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1558.1 1071 74.3
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1556.2 1078 72.7
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1551.6 1077 71.8
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1549.3 1074 71.4
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1547.7 1085 71.3
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1543.9 1081 71.9
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1543.9 1072 71.7
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1538.9 1076 71.7
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1537.3 1086 72.4
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1536.5 1109 72.3
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1535.0 1078 71.8
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1532.3 1085 71.6
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1511.5 948 79.1
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1505.3 1074 70.5
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1503.0 1096 69.3
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1502.6 1074 70.4
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1500.3 1082 71.3
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1497.3 1076 71.3
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1496.5 1075 70.1
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1494.9 1147 67.7
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1494.9 971 76.9
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1493.8 1076 70.2
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1489.2 1098 69.3
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1486.9 1040 71.5
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1482.2 1076 70.0
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1470.3 965 76.4
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1456.0 952 77.9
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1451.0 988 72.9
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1448.7 1227 63.5
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1437.2 1009 70.7
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1430.2 1077 67.9
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1426.8 1005 69.9
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1425.2 978 73.4
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1415.2 1099 66.8
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1409.0 1002 69.2
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1334.3 978 67.2
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1326.6 868 76.2
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1315.8 1199 60.6
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1297.0 1093 62.9
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1281.2 882 72.7
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1268.1 1009 62.7
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1260.4 1126 60.4
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1241.1 1003 61.4
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1237.6 972 66.5
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1222.6 1014 60.8
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 0.0e+00 1166.4 1065 62.3
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1158.7 1020 56.3
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1093.6 1057 55.6
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 3.3e-307 1058.5 1010 54.8
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 2.2e-306 1055.8 1102 54.9
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 3.1e-305 1052.0 640 79.2
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 2.7e-301 1038.9 751 68.0
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 3.0e-292 1008.8 586 88.7
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.4e-289 1000.0 1014 51.3
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 1.6e-285 986.5 1023 51.0
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 4.3e-262 908.7 617 72.6
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 9.9e-243 844.3 499 86.0
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 1.3e-226 790.8 584 68.2
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 6.1e-208 728.8 518 73.0
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 3.9e-199 699.5 397 87.4
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 6.7e-199 698.7 629 61.4
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 5.7e-198 695.7 472 72.0
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 5.5e-185 652.5 821 49.0
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.3e-178 631.3 459 68.8
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 4.1e-172 609.8 410 72.4
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 2.0e-166 590.9 389 77.4
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 4.3e-161 573.2 630 53.2
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 8.9e-159 565.5 328 86.6
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 7.5e-158 562.4 346 85.8
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 1.2e-155 555.1 392 76.0
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.5e-129 467.6 311 77.2
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 7.3e-129 466.1 344 72.4
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 2.1e-123 448.0 285 76.8
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.8e-114 418.3 294 69.0
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.1e-112 411.4 822 36.9
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.8e-101 374.0 197 88.3
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.8e-95 355.1 241 72.2
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 1.6e-83 315.5 300 49.7
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 4.5e-78 297.4 216 69.9
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.4e-58 232.6 176 70.5
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 1.1e-55 223.0 185 63.8
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 2.0e-54 218.8 142 75.4
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 4.0e-50 204.5 186 68.3
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.5e-44 186.0 150 60.0
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 6.8e-42 177.2 104 80.8
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 1.6e-38 166.0 140 63.6
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 3.0e-37 161.8 148 55.4
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 1.2e-35 156.4 105 72.4
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 3.6e-35 154.8 127 60.6
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 6.2e-35 154.1 112 67.9
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 5.2e-34 151.0 130 56.9
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 6.8e-34 150.6 203 45.3
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.1e-31 143.3 99 70.7
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 2.3e-29 135.6 94 71.3
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 4.3e-28 131.3 90 66.7
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 7.3e-28 130.6 125 62.4
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 7.3e-28 130.6 125 62.4
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 1.1e-26 126.7 92 73.9
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 2.3e-26 125.6 99 63.6
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 2.9e-24 118.6 154 47.4
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 1.9e-20 105.9 75 68.0
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 7.3e-20 104.0 210 36.7
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.5e-17 96.3 102 50.0
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 7.6e-17 94.0 66 69.7
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 1.3e-16 93.2 55 81.8
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 4.9e-16 91.3 60 78.3
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 3.5e-14 85.1 45 86.7
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 6.6e-13 80.9 109 46.8
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 9.6e-12 77.0 54 66.7
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 1.6e-11 76.3 51 74.5
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 2.1e-11 75.9 44 84.1
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 2.1e-11 75.9 44 84.1
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 1.1e-10 73.6 44 81.8
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 1.4e-10 73.2 43 83.7
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 3.1e-10 72.0 44 79.5
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 1.4e-07 63.2 55 56.4
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 1.9e-07 62.8 59 59.3
TPR.G2648 Trifolium pratense HOM05D004422 ORTHO05D413231 4.6e-06 58.2 31 87.1


User provided reference genes

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