Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 2.4e-95 352.1 169 100.0
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 9.4e-47 190.7 128 71.1
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 8.8e-45 184.1 146 62.3
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 5.9e-41 171.4 150 57.3
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 7.7e-41 171.0 110 70.0
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.0e-40 170.6 149 55.7
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.3e-40 170.2 124 63.7
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.3e-40 170.2 112 67.9
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 2.3e-40 169.5 108 70.4
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 2.9e-40 169.1 117 65.0
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 2.9e-40 169.1 111 68.5
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.1e-39 167.2 108 68.5
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 1.1e-39 167.2 117 64.1
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 1.9e-39 166.4 108 68.5
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 5.5e-39 164.9 111 65.8
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 9.5e-39 164.1 110 69.1
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 9.5e-39 164.1 132 57.6
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 1.6e-38 163.3 108 65.7
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 2.1e-38 162.9 117 65.8
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 2.1e-38 162.9 117 65.8
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 3.6e-38 162.2 101 69.3
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 4.7e-38 161.8 108 66.7
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 4.7e-38 161.8 116 62.9
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 4.7e-38 161.8 117 63.2
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 6.1e-38 161.4 95 74.7
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 6.1e-38 161.4 117 62.4
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.4e-37 160.2 117 61.5
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 1.4e-37 160.2 107 66.4
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 1.8e-37 159.8 138 55.1
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.8e-37 159.8 135 53.3
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.3e-37 159.5 140 55.0
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.3e-37 159.5 140 55.0
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.3e-37 159.5 120 61.7
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 2.3e-37 159.5 107 68.2
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.0e-37 159.1 140 55.0
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 3.0e-37 159.1 96 69.8
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 3.0e-37 159.1 143 53.1
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 3.0e-37 159.1 106 64.2
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 5.2e-37 158.3 140 52.1
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 6.8e-37 157.9 119 61.3
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 6.8e-37 157.9 135 53.3
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 8.9e-37 157.5 140 54.3
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 8.9e-37 157.5 111 61.3
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.2e-36 157.1 93 71.0
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.0e-36 156.4 179 46.9
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 2.0e-36 156.4 94 67.0
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 3.4e-36 155.6 124 58.1
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 4.4e-36 155.2 180 53.9
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 4.4e-36 155.2 115 60.9
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 4.4e-36 155.2 106 62.3
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 5.7e-36 154.8 106 67.0
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 7.5e-36 154.5 115 60.9
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 7.5e-36 154.5 109 60.6
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 7.5e-36 154.5 138 52.2
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 9.8e-36 154.1 121 60.3
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 1.3e-35 153.7 144 51.4
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 2.8e-35 152.5 114 63.2
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 2.8e-35 152.5 128 56.2
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 2.8e-35 152.5 146 45.9
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 2.8e-35 152.5 110 59.1
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 4.9e-35 151.8 143 49.0
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 1.4e-34 150.2 113 61.1
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.1e-34 149.1 118 55.1
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 3.1e-34 149.1 116 56.0
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 4.1e-34 148.7 113 61.1
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 4.1e-34 148.7 118 55.1
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 1.2e-33 147.1 117 56.4
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 2.0e-33 146.4 114 57.0
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 2.7e-33 146.0 96 65.6
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 3.5e-33 145.6 116 54.3
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.5e-33 145.2 108 61.1
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 5.9e-33 144.8 118 51.7
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 1.7e-32 143.3 118 51.7
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 6.6e-32 141.4 106 55.7
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 8.6e-32 141.0 113 53.1
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 8.6e-32 141.0 121 52.1
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 1.5e-31 140.2 113 52.2
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.2e-30 137.1 117 51.3
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 2.1e-30 136.3 156 51.3
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.8e-30 136.0 115 51.3
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 4.7e-30 135.2 118 51.7
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 4.7e-30 135.2 140 52.9
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 6.1e-30 134.8 110 52.7
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 6.1e-30 134.8 117 52.1
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.8e-29 133.3 115 51.3
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 2.4e-26 122.9 139 43.2
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 5.4e-26 121.7 127 50.4
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 5.4e-26 121.7 105 56.2
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 7.0e-26 121.3 140 45.0
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 9.2e-26 120.9 109 53.2
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.2e-25 120.6 107 53.3
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.6e-25 120.2 107 52.3
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 2.0e-25 119.8 106 52.8
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 1.3e-24 117.1 95 56.8
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.1e-23 114.0 93 49.5
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.3e-23 112.5 77 70.1
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 5.6e-23 111.7 95 55.8
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 7.3e-23 111.3 127 48.8
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 1.6e-22 110.2 116 50.0
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 2.8e-22 109.4 77 55.8
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 3.6e-22 109.0 48 100.0
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.2e-21 105.1 125 40.0
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 1.7e-19 100.1 54 72.2
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 4.9e-19 98.6 80 58.8
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.9e-18 96.7 130 42.3
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 4.1e-18 95.5 90 45.6
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 5.4e-18 95.1 146 36.3
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.2e-17 94.0 131 38.2
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.0e-16 90.9 102 38.2
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 1.3e-16 90.5 129 39.5
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 2.3e-16 89.7 127 36.2
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 3.0e-16 89.4 104 39.4
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 6.6e-16 88.2 121 38.8
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.6e-14 83.6 145 37.9
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 3.6e-14 82.4 112 40.2
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.1e-13 80.9 69 52.2
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 1.1e-13 80.9 111 41.4
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 1.1e-13 80.9 99 43.4
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 4.4e-12 75.5 118 37.3
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.8e-12 75.1 78 42.3
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.9e-12 74.3 75 45.3
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.7e-11 72.4 69 46.4
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.7e-11 72.4 69 46.4
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 8.3e-11 71.2 154 33.8
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.9e-10 70.1 101 34.7
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 3.5e-09 65.9 51 62.7
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 4.6e-09 65.5 54 59.3
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.8e-09 64.7 115 29.6
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.3e-08 63.2 46 50.0
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.6e-08 61.6 73 47.9
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 3.3e-07 59.3 52 51.9
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 4.7e-06 55.5 35 57.1
Haze_00433 Corylus avellana HOM05D000082 ORTHO05D000038 8.1e-06 54.7 46 45.7


User provided reference genes

Program Settings