Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C986T9 Lonicera japonica HOM05D002509 ORTHO05D002758 2.8e-36 154.8 83 100.0
Dinv03343 Davidia involucrata HOM05D002509 ORTHO05D002758 1.0e-17 93.2 80 68.8
Dinv29099 Davidia involucrata HOM05D002509 ORTHO05D002758 1.9e-16 89.0 80 65.0
Dinv29101 Davidia involucrata HOM05D002509 ORTHO05D002758 1.9e-16 89.0 80 65.0
GSVIVG01025739001 Vitis vinifera HOM05D002509 ORTHO05D002758 3.2e-16 88.2 77 64.9
Hma1.2p1_2076F.1_g313320 Hydrangea macrophylla HOM05D002509 ORTHO05D002758 7.2e-16 87.0 80 66.2
SGA_v2.0_scaffold105G30291 Striga asiatica HOM05D002509 ORTHO05D002758 1.4e-14 82.8 80 61.2
Thecc.05G067400 Theobroma cacao HOM05D002509 ORTHO05D002758 1.4e-14 82.8 80 63.8
Nn2g13788 Nelumbo nucifera HOM05D002509 ORTHO05D002758 1.8e-14 82.4 79 63.3
TWI53G1670 Tripterygium wilfordii HOM05D002509 ORTHO05D002758 3.0e-14 81.6 78 62.8
Cc06_g19290 Coffea canephora HOM05D002509 ORTHO05D002758 5.2e-14 80.9 86 60.5
Duzib106G0487 Durio zibethinus HOM05D002509 ORTHO05D002758 5.2e-14 80.9 80 62.5
PGSC0003DMG400008373 Solanum tuberosum HOM05D002509 ORTHO05D002758 1.2e-13 79.7 88 58.0
Nn2g11606 Nelumbo nucifera HOM05D002509 ORTHO05D002758 2.0e-13 79.0 79 60.8
Gohir.A01G213600 Gossypium hirsutum HOM05D002509 ORTHO05D002758 2.6e-13 78.6 80 61.2
Gohir.A09G146400 Gossypium hirsutum HOM05D002509 ORTHO05D002758 2.6e-13 78.6 80 62.5
Gohir.D09G142100 Gossypium hirsutum HOM05D002509 ORTHO05D002758 2.6e-13 78.6 80 62.5
Gorai.006G163100 Gossypium raimondii HOM05D002509 ORTHO05D002758 2.6e-13 78.6 80 62.5
Cpa.g.sc738.2 Carica papaya HOM05D002509 ORTHO05D002758 4.4e-13 77.8 81 59.3
Duzib093G0938 Durio zibethinus HOM05D002509 ORTHO05D002758 4.4e-13 77.8 80 61.2
Gohir.D01G202300 Gossypium hirsutum HOM05D002509 ORTHO05D002758 4.4e-13 77.8 80 60.0
Gorai.002G247000 Gossypium raimondii HOM05D002509 ORTHO05D002758 4.4e-13 77.8 80 60.0
TAR636G1397 Trochodendron aralioides HOM05D002509 ORTHO05D002758 7.5e-13 77.0 79 58.2
Oeu021495.1 Olea europaea HOM05D002509 ORTHO05D002758 2.2e-12 75.5 85 58.8
Lsat_1_v5_gn_6_24981 Lactuca sativa HOM05D002509 ORTHO05D002758 3.7e-12 74.7 76 60.5
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 3.7e-12 74.7 75 60.0
TWI74G0772 Tripterygium wilfordii HOM05D002509 ORTHO05D002758 6.3e-12 73.9 78 59.0
Duzib128G1563 Durio zibethinus HOM05D002509 ORTHO05D002758 8.3e-12 73.6 75 61.3
unitig_46.g18436 Utricularia gibba HOM05D002509 ORTHO05D002758 1.4e-11 72.8 84 59.5
Migut.J01656 Erythranthe guttata HOM05D002509 ORTHO05D002758 1.8e-11 72.4 85 57.6
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 3.1e-11 71.6 81 55.6
MBI18_g36549_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 9.1e-11 70.1 81 53.1
SGA_v2.0_scaffold69G23151 Striga asiatica HOM05D002509 ORTHO05D002758 9.1e-11 70.1 92 53.3
Sc04g0001520 Simmondsia chinensis HOM05D002509 ORTHO05D002758 1.2e-10 69.7 80 57.5
THA.LOC104816350 Tarenaya hassleriana HOM05D002509 ORTHO05D002758 1.2e-10 69.7 85 54.1
Atru.chr8.1799 Acer truncatum HOM05D002509 ORTHO05D002758 1.6e-10 69.3 61 68.9
Eucgr.A01674 Eucalyptus grandis HOM05D002509 ORTHO05D002758 2.0e-10 68.9 61 65.6
Oeu057786.1 Olea europaea HOM05D002509 ORTHO05D002758 2.7e-10 68.6 84 56.0
THA.LOC104826915 Tarenaya hassleriana HOM05D002509 ORTHO05D002758 2.7e-10 68.6 80 53.8
MSTRG.26160 Avicennia marina HOM05D002509 ORTHO05D002758 4.5e-10 67.8 81 55.6
Nitab4.5_0000812g0100 Nicotiana tabacum HOM05D002509 ORTHO05D002758 5.9e-10 67.4 81 56.8
Nitab4.5_0004588g0040 Nicotiana tabacum HOM05D002509 ORTHO05D002758 5.9e-10 67.4 81 56.8
SalBow1G1286 Salvia bowleyana HOM05D002509 ORTHO05D002758 7.7e-10 67.0 86 53.5
SalBow1G2356 Salvia bowleyana HOM05D002509 ORTHO05D002758 7.7e-10 67.0 86 53.5
Hund02786 Selenicereus undatus HOM05D002509 ORTHO05D002758 1.0e-09 66.6 81 53.1
Lsat_1_v5_gn_1_52320 Lactuca sativa HOM05D002509 ORTHO05D002758 1.3e-09 66.2 78 53.8
Sabra06G0098300 Salix brachista HOM05D002509 ORTHO05D002758 1.7e-09 65.9 80 53.8
Aqoxy1G01153 Aquilegia oxysepala HOM05D002509 ORTHO05D002758 2.2e-09 65.5 76 55.3
PGR142G2449 Punica granatum HOM05D002509 ORTHO05D002758 2.2e-09 65.5 88 53.4
Ciclev10012088m.g Citrus clementina HOM05D002509 ORTHO05D002758 3.8e-09 64.7 79 50.6
AUR62008146 Chenopodium quinoa HOM05D002509 ORTHO05D002758 5.0e-09 64.3 79 54.4
Aa31LG1G21740 Aethionema arabicum HOM05D002509 ORTHO05D002758 1.1e-08 63.2 81 53.1
EL10Ac5g10657 Beta vulgaris HOM05D002509 ORTHO05D002758 1.5e-08 62.8 79 51.9
AUR62028728 Chenopodium quinoa HOM05D002509 ORTHO05D002758 1.9e-08 62.4 79 53.2
CiPaw.06G032400 Carya illinoinensis HOM05D002509 ORTHO05D002758 2.5e-08 62.0 63 58.7
unitig_37.g12698 Utricularia gibba HOM05D002509 ORTHO05D002758 3.2e-08 61.6 86 52.3
Ah.11g051170 Amaranthus hybridus HOM05D002509 ORTHO05D002758 4.2e-08 61.2 76 53.9
CARHR209930 Cardamine hirsuta HOM05D002509 ORTHO05D002758 4.2e-08 61.2 62 61.3
Manes.08G010800 Manihot esculenta HOM05D002509 ORTHO05D002758 4.2e-08 61.2 78 53.8
Manes.09G066000 Manihot esculenta HOM05D002509 ORTHO05D002758 4.2e-08 61.2 84 51.2
QL09p024057 Quercus lobata HOM05D002509 ORTHO05D002758 5.5e-08 60.8 62 59.7
CANSAT56G3595 Cannabis sativa HOM05D002509 ORTHO05D002758 9.4e-08 60.1 57 63.2
Phvul.002G039800 Phaseolus vulgaris HOM05D002509 ORTHO05D002758 9.4e-08 60.1 58 60.3
Sabra16G0098500 Salix brachista HOM05D002509 ORTHO05D002758 9.4e-08 60.1 72 55.6
AL6G12740 Arabidopsis lyrata HOM05D002509 ORTHO05D002758 1.2e-07 59.7 62 59.7
Carub.0006s0222 Capsella rubella HOM05D002509 ORTHO05D002758 1.2e-07 59.7 62 61.3
Cfa016032 Carpinus fangiana HOM05D002509 ORTHO05D002758 1.2e-07 59.7 63 58.7
Haze_00426 Corylus avellana HOM05D002509 ORTHO05D002758 1.2e-07 59.7 63 58.7
Potri.016G093200 Populus trichocarpa HOM05D002509 ORTHO05D002758 2.7e-07 58.5 77 51.9
Thhalv10014118m.g Eutrema salsugineum HOM05D002509 ORTHO05D002758 3.6e-07 58.2 62 58.1
arahy.Tifrunner.gnm1.ann1.GCS8UL Arachis hypogaea HOM05D002509 ORTHO05D002758 4.7e-07 57.8 57 59.6
CiPaw.05G220300 Carya illinoinensis HOM05D002509 ORTHO05D002758 4.7e-07 57.8 62 56.5
AT5G03415 Arabidopsis thaliana HOM05D002509 ORTHO05D002758 6.1e-07 57.4 62 59.7
Migut.K00137 Erythranthe guttata HOM05D002509 ORTHO05D002758 6.1e-07 57.4 58 62.1
Glyma.01G228100 Glycine max HOM05D002509 ORTHO05D002758 8.0e-07 57.0 60 55.0
Glyma.11G010800 Glycine max HOM05D002509 ORTHO05D002758 8.0e-07 57.0 57 59.6
Sp6g39330 Schrenkiella parvula HOM05D002509 ORTHO05D002758 8.0e-07 57.0 62 58.1
Sopen10g029090 Solanum pennellii HOM05D002509 ORTHO05D002758 1.0e-06 56.6 88 45.5
ClCG10G009090 Citrullus lanatus HOM05D002509 ORTHO05D002758 1.4e-06 56.2 60 56.7
CsaV3_4G009290 Cucumis sativus L. HOM05D002509 ORTHO05D002758 1.4e-06 56.2 60 56.7
DCAR_014999 Daucus carota HOM05D002509 ORTHO05D002758 1.4e-06 56.2 83 47.0
VMungo1215G2597 Vigna mungo HOM05D002509 ORTHO05D002758 1.8e-06 55.8 55 60.0
Lalb_Chr09g0320211 Lupinus albus HOM05D002509 ORTHO05D002758 3.0e-06 55.1 57 57.9
Oeu059350.2 Olea europaea HOM05D002509 ORTHO05D002758 3.0e-06 55.1 54 63.0
Oeu059351.1 Olea europaea HOM05D002509 ORTHO05D002758 3.0e-06 55.1 54 63.0
Potri.006G124200 Populus trichocarpa HOM05D002509 ORTHO05D002758 3.0e-06 55.1 81 48.1
ECA233G1525 Erigeron canadensis HOM05D002509 ORTHO05D002758 4.0e-06 54.7 68 54.4
Lj2A121T44 Lonicera japonica HOM05D002509 ORTHO05D002758 5.2e-06 54.3 89 49.4
Solyc10g078430.2 Solanum lycopersicum HOM05D002509 ORTHO05D002758 8.8e-06 53.5 88 44.3


User provided reference genes

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