Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 2.0e-275 951.8 490 100.0
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 9.5e-249 863.2 496 91.3
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 8.4e-197 690.6 484 74.6
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 1.6e-195 686.4 484 73.1
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 7.9e-195 684.1 483 73.1
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 2.8e-192 675.6 500 69.2
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.8e-191 672.9 495 70.9
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 4.0e-191 671.8 483 70.8
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 2.5e-188 662.5 482 71.0
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 3.2e-188 662.1 485 69.7
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 1.3e-184 650.2 478 69.5
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 3.7e-184 648.7 480 69.2
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 5.3e-183 644.8 483 68.9
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 3.4e-182 642.1 483 68.9
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 1.4e-178 630.2 483 67.1
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 1.4e-178 630.2 483 67.1
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 8.8e-178 627.5 617 56.9
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 8.8e-178 627.5 617 56.9
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 1.5e-177 626.7 478 66.9
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 2.5e-177 625.9 478 66.9
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 4.3e-177 625.2 483 66.7
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 5.9e-174 614.8 479 68.3
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 2.2e-173 612.8 483 65.2
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.1e-172 610.5 435 72.9
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 5.5e-172 608.2 492 66.5
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 5.1e-170 601.7 483 65.0
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 8.8e-170 600.9 485 64.5
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 3.3e-169 599.0 483 63.6
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 9.7e-169 597.4 483 63.4
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 1.4e-167 593.6 406 77.1
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 1.2e-166 590.5 576 57.6
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 1.5e-166 590.1 491 62.7
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 1.1e-164 583.9 478 64.2
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 1.5e-164 583.6 478 64.2
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 2.5e-164 582.8 490 63.1
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 3.2e-164 582.4 478 64.4
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 9.4e-164 580.9 491 63.7
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 1.2e-163 580.5 490 62.7
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 6.1e-163 578.2 489 63.2
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 2.3e-162 576.2 483 61.5
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 2.0e-161 573.2 480 64.0
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 3.3e-161 572.4 483 62.3
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 3.7e-160 568.9 502 60.2
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 1.4e-159 567.0 484 61.8
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 3.1e-159 565.8 485 60.6
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 2.6e-158 562.8 485 61.0
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.3e-157 560.5 492 62.4
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 3.8e-157 558.9 483 60.2
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.9e-156 556.6 483 62.7
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 2.5e-156 556.2 484 60.3
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 4.7e-155 552.0 482 60.0
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 1.2e-153 547.4 484 60.3
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 4.4e-153 545.4 449 65.7
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 6.3e-152 541.6 484 62.4
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 8.3e-152 541.2 483 59.4
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 4.1e-151 538.9 516 57.6
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 5.4e-151 538.5 481 60.7
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 2.0e-150 536.6 483 58.6
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 4.5e-150 535.4 483 61.7
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 4.5e-150 535.4 495 59.4
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 4.5e-150 535.4 484 60.1
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 7.7e-150 534.6 485 58.8
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 1.7e-149 533.5 485 59.0
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 1.1e-148 530.8 485 58.4
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.5e-148 530.4 452 61.9
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.5e-148 530.4 482 58.7
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 2.5e-148 529.6 483 59.0
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 3.2e-148 529.3 480 59.0
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 2.1e-147 526.6 483 57.8
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 2.1e-147 526.6 479 57.8
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 3.6e-147 525.8 483 58.8
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 3.6e-147 525.8 485 57.9
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 4.7e-147 525.4 483 58.4
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 3.0e-146 522.7 479 59.3
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 4.0e-146 522.3 475 59.4
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 6.8e-146 521.5 494 59.7
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 6.8e-146 521.5 487 57.5
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 2.0e-145 520.0 479 57.2
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 9.8e-145 517.7 483 56.9
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.3e-144 517.3 488 57.2
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 6.3e-144 515.0 488 57.4
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 1.8e-143 513.5 475 58.1
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 4.1e-143 512.3 479 57.0
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 5.4e-143 511.9 476 58.0
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 7.0e-143 511.5 476 58.6
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 7.0e-143 511.5 544 54.2
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 1.2e-142 510.8 508 54.7
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 1.6e-142 510.4 483 57.3
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 1.6e-142 510.4 483 57.8
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 1.6e-142 510.4 483 57.8
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 1.6e-142 510.4 483 57.8
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 4.5e-142 508.8 479 57.2
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 5.9e-142 508.4 483 57.3
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 1.3e-141 507.3 483 57.1
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 1.3e-141 507.3 482 57.7
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 1.1e-140 504.2 542 52.2
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.1e-140 504.2 367 71.4
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 1.9e-140 503.4 488 56.8
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.5e-140 503.1 488 56.1
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 2.1e-139 500.0 433 61.4
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 8.0e-139 498.0 495 57.4
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.4e-138 497.3 605 47.9
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 3.0e-138 496.1 431 60.8
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 1.8e-135 486.9 485 54.0
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 1.8e-135 486.9 472 54.7
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.4e-130 470.7 358 66.8
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 4.0e-130 469.2 483 54.2
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.0e-129 466.8 513 52.4
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 2.6e-121 439.9 413 57.6
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 4.9e-120 435.6 483 53.8
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 2.8e-115 419.9 473 51.2
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.6e-113 413.3 365 60.5
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 5.4e-111 405.6 367 58.9
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 9.6e-108 394.8 497 47.3
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 7.6e-105 385.2 300 66.3
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 4.9e-104 382.5 489 45.8
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 5.4e-103 379.0 487 45.4
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 7.1e-103 378.6 475 48.4
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.8e-90 337.4 454 46.5
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 5.3e-82 309.3 374 50.0
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 6.9e-82 308.9 273 59.0
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 1.0e-80 305.1 226 68.1
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.6e-78 297.7 409 46.0
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 2.7e-78 297.0 392 47.7
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 6.7e-77 292.4 498 39.2
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.8e-75 287.0 423 44.2
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.5e-73 279.6 351 47.6
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 2.2e-67 260.8 474 40.7
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 6.3e-67 259.2 231 60.2
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 2.4e-66 257.3 293 51.2
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 2.4e-66 257.3 247 57.9
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.1e-66 256.5 314 48.4
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 6.9e-66 255.8 267 54.7
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.5e-63 247.3 197 68.0
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 8.8e-61 238.8 211 57.8
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.3e-60 236.9 237 58.2
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.3e-59 235.0 181 62.4
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 3.1e-58 230.3 210 58.6
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.9e-55 221.1 287 46.3
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-54 218.4 231 50.2
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 2.0e-52 211.1 176 64.8
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 7.4e-52 209.1 236 51.3
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 9.7e-52 208.8 176 64.2
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 9.7e-52 208.8 286 47.2
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.6e-49 201.4 142 70.4
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 5.2e-45 186.4 164 62.2
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 1.8e-42 177.9 224 45.5
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 4.5e-41 173.3 120 70.8
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 1.5e-39 168.3 228 43.9
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 1.2e-30 138.7 195 44.6
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 6.8e-29 132.9 181 44.2
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 5.7e-28 129.8 78 82.1
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 2.2e-27 127.9 187 42.8
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 7.0e-26 122.9 211 40.3
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.7e-24 118.2 98 59.2
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 3.8e-24 117.1 98 61.2
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 2.5e-23 114.4 140 50.0
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 1.5e-20 105.1 76 69.7
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 9.8e-20 102.4 95 51.6
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.7e-19 101.7 98 55.1
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 2.2e-19 101.3 157 42.7
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 3.7e-19 100.5 80 62.5
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 1.6e-17 95.1 470 24.5
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 2.7e-17 94.4 110 50.9
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 6.6e-16 89.7 528 24.8
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.1e-15 89.0 68 63.2
CAN.G1034.2 Capsicum annuum HOM05D000222 ORTHO05D011077 8.0e-14 82.8 226 31.9
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.2e-13 80.1 60 63.3
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 1.7e-11 75.1 205 28.8
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 2.2e-11 74.7 56 64.3
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 4.9e-11 73.6 181 37.0
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 4.9e-11 73.6 53 67.9
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 4.1e-10 70.5 212 34.0
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 2.0e-09 68.2 159 34.0
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 2.7e-09 67.8 129 35.7
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 1.1e-07 62.4 142 33.1
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 4.3e-07 60.5 151 35.1
Mapoly0063s0044 Marchantia polymorpha HOM05D003810 ORTHO05D004416 5.6e-07 60.1 84 42.9
CAN.G523.5 Capsicum annuum HOM05D000222 ORTHO05D012343 7.3e-07 59.7 63 52.4
SEGI_40538 Sequoiadendron giganteum HOM05D003810 ORTHO05D004416 2.8e-06 57.8 53 54.7


User provided reference genes

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