Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 0.0e+00 1203.7 616 100.0
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 5.1e-284 980.7 600 83.5
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 7.7e-272 940.3 615 80.0
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 1.9e-262 909.1 615 76.9
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 1.6e-261 906.0 615 76.6
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 8.0e-253 877.1 625 74.1
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 4.0e-252 874.8 625 73.6
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.7e-250 869.4 616 73.5
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 1.7e-250 869.4 625 74.4
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 9.1e-249 863.6 616 73.4
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.6e-248 862.8 616 74.2
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 3.5e-248 861.7 606 75.7
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 1.7e-247 859.4 617 74.2
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.2e-247 859.0 624 72.9
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.0e-247 857.8 622 73.0
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 1.5e-246 856.3 618 74.1
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 5.5e-246 854.4 624 74.0
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 5.5e-246 854.4 628 71.5
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 7.2e-246 854.0 616 74.8
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 9.4e-246 853.6 617 75.0
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.6e-245 852.8 635 72.3
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 1.4e-244 849.7 616 73.7
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.4e-244 849.7 652 70.6
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 4.4e-243 844.7 617 72.6
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 9.8e-243 843.6 626 73.2
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 3.7e-242 841.6 599 73.8
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.8e-241 839.3 615 72.8
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 4.1e-241 838.2 628 71.7
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 2.0e-240 835.9 614 71.0
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.7e-240 835.5 615 72.8
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 3.8e-239 831.6 627 72.1
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 2.5e-238 828.9 616 72.1
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 2.2e-234 815.8 617 71.3
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 7.0e-233 810.8 617 71.5
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.2e-232 810.1 616 70.8
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.0e-231 807.0 617 69.2
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.0e-231 807.0 614 70.2
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 5.0e-231 804.7 616 70.1
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 5.6e-230 801.2 618 70.9
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 9.5e-230 800.4 656 66.8
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.0e-228 797.0 617 68.7
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.8e-228 796.2 616 71.1
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 1.8e-228 796.2 623 69.5
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.1e-228 795.4 620 69.4
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.8e-227 791.2 651 66.4
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 2.9e-226 788.9 616 69.5
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 8.3e-226 787.3 626 69.3
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 2.4e-225 785.8 617 69.5
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.5e-222 776.5 645 67.8
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 2.5e-222 775.8 619 67.4
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.2e-221 773.5 618 68.0
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 1.6e-221 773.1 601 69.6
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 4.7e-221 771.5 600 69.0
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 1.1e-220 770.4 632 66.0
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 2.3e-220 769.2 627 67.1
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.5e-219 766.5 618 66.7
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 2.6e-219 765.8 643 65.2
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 3.4e-219 765.4 638 66.9
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 6.4e-218 761.1 618 67.8
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 3.2e-217 758.8 526 74.9
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.7e-215 753.1 619 65.6
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.5e-214 750.0 618 66.8
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 3.3e-214 748.8 567 70.7
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.2e-213 746.9 617 65.2
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 6.2e-213 744.6 558 70.3
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 2.3e-212 742.7 621 66.3
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 6.8e-212 741.1 622 64.8
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.2e-211 740.3 626 65.0
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 2.6e-211 739.2 621 66.5
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 2.4e-209 732.6 633 64.3
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 2.1e-208 729.6 563 70.0
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 6.0e-208 728.0 620 64.4
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.0e-208 728.0 595 66.4
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 3.0e-207 725.7 633 62.7
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 3.0e-207 725.7 622 64.3
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 3.3e-206 722.2 622 64.1
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 3.3e-206 722.2 638 62.2
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 4.3e-206 721.8 616 64.1
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 5.6e-206 721.5 616 64.8
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 7.3e-206 721.1 617 63.7
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 3.6e-205 718.8 616 64.0
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 3.6e-205 718.8 622 63.8
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.7e-205 718.4 588 66.7
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 2.4e-204 716.1 616 63.6
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 5.2e-204 714.9 622 63.3
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-203 713.4 622 63.8
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 2.0e-203 713.0 615 63.6
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 1.6e-200 703.4 554 67.7
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 1.6e-200 703.4 623 62.6
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.6e-200 703.4 622 63.0
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 8.7e-199 697.6 636 63.2
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 2.1e-197 693.0 614 64.0
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 4.0e-196 688.7 504 70.4
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 2.2e-194 682.9 617 61.3
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 1.1e-193 680.6 618 61.2
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 7.9e-192 674.5 630 61.4
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 1.3e-191 673.7 525 68.4
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 2.5e-190 669.5 563 64.1
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 1.1e-185 654.1 623 59.2
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 1.6e-176 623.6 620 57.6
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 2.7e-176 622.9 564 62.1
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.6e-173 613.6 623 57.0
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 5.3e-172 608.6 398 77.9
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 3.0e-167 592.8 593 59.7
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 3.9e-159 565.8 339 82.6
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.2e-157 560.1 517 60.0
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.5e-155 552.4 619 54.6
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 7.7e-155 551.6 340 83.2
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.8e-154 549.3 501 60.9
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.8e-151 540.4 319 83.4
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 1.5e-142 510.8 519 56.5
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.3e-142 509.6 436 63.8
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-140 504.2 615 50.6
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 5.3e-140 502.3 337 74.2
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 2.9e-138 496.5 556 52.3
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.6e-136 489.6 400 67.2
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 1.3e-109 401.4 500 45.0
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-104 384.8 390 56.4
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 9.5e-97 358.6 374 56.7
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 8.4e-93 345.5 322 61.8
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.4e-92 344.0 278 66.2
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 3.0e-90 337.0 196 89.8
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 3.6e-88 330.1 365 51.5
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 4.0e-87 326.6 322 58.4
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 6.4e-85 319.3 551 39.2
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 6.0e-83 312.8 231 68.8
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 3.9e-82 310.1 273 62.3
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 1.5e-78 298.1 690 34.2
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 1.7e-77 294.7 272 62.5
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.2e-72 276.2 242 62.4
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.5e-70 271.6 279 58.4
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 7.1e-68 262.7 226 58.4
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 5.1e-66 256.5 271 55.0
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.5e-65 255.0 336 48.2
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 3.5e-59 233.8 594 32.3
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 9.7e-57 225.7 278 50.7
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 1.1e-55 222.2 274 52.9
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 5.9e-54 216.5 246 50.8
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 9.7e-49 199.1 263 47.1
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 9.7e-49 199.1 106 95.3
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.8e-48 197.6 149 71.1
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 2.8e-48 197.6 119 81.5
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 2.0e-46 191.4 273 46.5
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.9e-44 184.9 206 56.3
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 7.9e-43 179.5 147 66.0
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.9e-43 179.5 162 63.0
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.9e-42 177.2 210 49.5
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 9.7e-41 172.6 110 80.9
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 6.3e-40 169.9 272 40.4
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.1e-39 169.1 143 69.2
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 3.1e-39 167.5 385 35.1
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.9e-37 161.0 321 37.1
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.0e-34 152.5 237 41.4
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 7.4e-33 146.4 75 98.7
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 1.7e-32 145.2 75 98.7
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 1.1e-31 142.5 81 90.1
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.6e-30 137.9 160 52.5
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 3.8e-29 134.0 126 61.9
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 5.5e-28 130.2 138 55.8
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 9.4e-28 129.4 175 44.6
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 8.0e-27 126.3 117 56.4
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.5e-25 122.1 316 34.8
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 9.7e-25 119.4 186 39.8
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 4.5e-22 110.5 122 50.8
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 5.9e-22 110.2 133 42.9
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.6e-19 102.1 250 30.8
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.0e-18 99.4 140 43.6
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 1.0e-18 99.4 77 64.9
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 1.1e-12 79.3 107 48.6
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 1.2e-09 69.3 50 72.0
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-09 68.2 93 50.5
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 7.5e-09 66.6 48 60.4
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 2.2e-08 65.1 159 39.0
Nitab4.5_0000108g0210 Nicotiana tabacum HOM05D008334 ORTHO05D010366 2.4e-07 61.6 49 61.2
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 3.1e-07 61.2 39 71.8
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 7.0e-07 60.1 38 86.8
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 2.0e-06 58.5 38 84.2
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 2.7e-06 58.2 73 46.6
Ca_24313_v3 Cicer arietinum L. HOM05D000703 ORTHO05D004367 4.5e-06 57.4 54 57.4
Sopen05g010660 Solanum pennellii HOM05D003724 ORTHO05D004367 4.5e-06 57.4 54 63.0
MBI07_g38547_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 7.8e-06 56.6 71 42.3


User provided reference genes

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