Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 8.1e-39 163.3 85 100.0
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 1.2e-29 132.9 84 81.0
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 2.2e-28 128.6 84 75.0
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 2.2e-28 128.6 81 81.5
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 3.8e-28 127.9 84 77.4
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 4.9e-28 127.5 84 78.6
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 6.4e-28 127.1 85 78.8
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 8.4e-28 126.7 84 76.2
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 1.4e-27 125.9 84 73.8
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 1.9e-27 125.6 84 76.2
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 2.4e-27 125.2 84 75.0
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 2.4e-27 125.2 84 76.2
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 3.2e-27 124.8 84 73.8
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 3.2e-27 124.8 84 75.0
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 3.2e-27 124.8 84 75.0
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 4.2e-27 124.4 84 77.4
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 4.2e-27 124.4 85 76.5
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 5.5e-27 124.0 84 76.2
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 7.1e-27 123.6 81 80.2
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 7.1e-27 123.6 84 73.8
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 7.1e-27 123.6 84 73.8
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 7.1e-27 123.6 84 76.2
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 9.3e-27 123.2 84 75.0
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 9.3e-27 123.2 85 77.6
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 1.2e-26 122.9 84 72.6
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 1.2e-26 122.9 84 73.8
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 1.2e-26 122.9 82 79.3
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 1.6e-26 122.5 84 72.6
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.6e-26 122.5 84 73.8
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 2.1e-26 122.1 85 76.5
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 2.7e-26 121.7 77 76.6
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 2.7e-26 121.7 81 75.3
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.7e-26 121.7 85 72.9
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 2.7e-26 121.7 84 71.4
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 3.5e-26 121.3 85 75.3
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 3.5e-26 121.3 84 72.6
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 3.5e-26 121.3 85 74.1
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 3.5e-26 121.3 85 72.9
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 3.5e-26 121.3 85 72.9
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 4.6e-26 120.9 85 74.1
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 4.6e-26 120.9 84 72.6
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 6.0e-26 120.6 84 70.2
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 7.9e-26 120.2 77 77.9
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.0e-25 119.8 83 74.7
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 1.0e-25 119.8 84 75.0
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 1.0e-25 119.8 78 79.5
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 1.3e-25 119.4 84 67.9
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 1.3e-25 119.4 84 72.6
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 1.8e-25 119.0 84 72.6
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 1.8e-25 119.0 84 71.4
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.8e-25 119.0 84 72.6
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 1.8e-25 119.0 84 71.4
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 1.8e-25 119.0 85 72.9
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 2.3e-25 118.6 82 73.2
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 2.3e-25 118.6 84 70.2
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 3.0e-25 118.2 83 74.7
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 3.0e-25 118.2 84 75.0
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 3.9e-25 117.9 84 69.0
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 5.1e-25 117.5 84 70.2
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 6.7e-25 117.1 82 76.8
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 6.7e-25 117.1 84 67.9
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 8.7e-25 116.7 86 72.1
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 1.1e-24 116.3 83 73.5
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 1.1e-24 116.3 84 69.0
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 1.5e-24 115.9 84 69.0
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 1.5e-24 115.9 84 69.0
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 1.5e-24 115.9 84 69.0
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 1.5e-24 115.9 85 69.4
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 1.9e-24 115.5 77 75.3
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 2.5e-24 115.2 85 69.4
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 3.3e-24 114.8 84 67.9
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 3.3e-24 114.8 84 67.9
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 3.3e-24 114.8 84 70.2
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 3.3e-24 114.8 84 72.6
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 5.6e-24 114.0 84 66.7
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 5.6e-24 114.0 83 72.3
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.6e-24 114.0 81 74.1
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.6e-24 114.0 81 74.1
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 5.6e-24 114.0 79 77.2
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 7.4e-24 113.6 81 74.1
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 7.4e-24 113.6 81 74.1
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 7.4e-24 113.6 79 70.9
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 7.4e-24 113.6 85 69.4
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 9.6e-24 113.2 77 72.7
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 9.6e-24 113.2 84 67.9
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 1.3e-23 112.8 84 67.9
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 1.6e-23 112.5 84 65.5
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.6e-23 112.5 78 71.8
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 2.1e-23 112.1 83 73.5
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 2.1e-23 112.1 84 73.8
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.8e-23 111.7 81 72.8
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 3.7e-23 111.3 84 72.6
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 3.7e-23 111.3 80 72.5
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 8.2e-23 110.2 84 66.7
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 5.3e-22 107.5 77 72.7
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 7.6e-21 103.6 84 69.0
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.6e-18 95.9 78 64.1
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 1.6e-18 95.9 79 63.3
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 9.7e-16 86.7 82 61.0
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 1.3e-15 86.3 80 60.0
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 3.7e-15 84.7 58 67.2
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.1e-14 83.2 49 77.6
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 4.1e-14 81.3 78 56.4
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 9.0e-14 80.1 84 52.4
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 2.9e-12 75.1 83 48.2
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 1.1e-11 73.2 86 47.7
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.4e-11 72.8 84 50.0
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.4e-11 72.8 84 50.0
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 2.5e-11 72.0 83 48.2
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 7.2e-11 70.5 81 48.1
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 1.2e-10 69.7 61 59.0
Cfa003663 Carpinus fangiana HOM05D005316 ORTHO05D006495 5.3e-06 54.3 76 52.6


User provided reference genes

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