Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A919G40 Lonicera japonica HOM05D000104 ORTHO05D005769 6.9e-44 180.3 91 100.0
Dinv14287 Davidia involucrata HOM05D000104 ORTHO05D005769 9.6e-38 159.8 85 94.1
Dinv19274 Davidia involucrata HOM05D000104 ORTHO05D005769 2.8e-37 158.3 85 94.1
CSS0012736 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D005769 3.7e-37 157.9 84 94.0
DCAR_006645 Daucus carota HOM05D000104 ORTHO05D005769 3.7e-37 157.9 84 92.9
SGA_v2.0_scaffold105G30483 Striga asiatica HOM05D000104 ORTHO05D005769 3.7e-37 157.9 85 91.8
MSTRG.19900 Avicennia marina HOM05D000104 ORTHO05D005769 8.1e-37 156.8 85 92.9
SalBow6G1274 Salvia bowleyana HOM05D000104 ORTHO05D005769 1.4e-36 156.0 84 92.9
GSVIVG01033511001 Vitis vinifera HOM05D000104 ORTHO05D005769 1.4e-36 156.0 85 90.6
Cc06_g16020 Coffea canephora HOM05D000104 ORTHO05D005769 1.8e-36 155.6 85 91.8
Oeu033742.2 Olea europaea HOM05D000104 ORTHO05D005769 1.8e-36 155.6 85 91.8
Potri.001G207700 Populus trichocarpa HOM05D000104 ORTHO05D005769 3.1e-36 154.8 85 89.4
Potri.003G022100 Populus trichocarpa HOM05D000104 ORTHO05D005769 3.1e-36 154.8 85 89.4
Sabra01G0160500 Salix brachista HOM05D000104 ORTHO05D005769 3.1e-36 154.8 85 89.4
Migut.J01827 Erythranthe guttata HOM05D000104 ORTHO05D005769 4.0e-36 154.5 85 91.8
SGA_v2.0_scaffold69G23071 Striga asiatica HOM05D000104 ORTHO05D005769 4.0e-36 154.5 84 90.5
Atru.chr8.1089 Acer truncatum HOM05D000104 ORTHO05D005769 6.9e-36 153.7 85 88.2
Sabra03G0014100 Salix brachista HOM05D000104 ORTHO05D005769 6.9e-36 153.7 85 88.2
CANSAT64G1790 Cannabis sativa HOM05D000104 ORTHO05D005769 9.0e-36 153.3 85 88.2
Ciclev10010891m.g Citrus clementina HOM05D000104 ORTHO05D005769 9.0e-36 153.3 85 88.2
Phvul.007G259200 Phaseolus vulgaris HOM05D000104 ORTHO05D005769 1.2e-35 152.9 85 87.1
VMungo0720G3110 Vigna mungo HOM05D000104 ORTHO05D005769 1.2e-35 152.9 85 87.1
CiPaw.09G030900 Carya illinoinensis HOM05D000104 ORTHO05D005769 1.5e-35 152.5 85 88.2
Glyma.02G174100 Glycine max HOM05D000104 ORTHO05D005769 1.5e-35 152.5 85 87.1
Glyma.09G112200 Glycine max HOM05D000104 ORTHO05D005769 1.5e-35 152.5 85 87.1
HanXRQChr01g0026921 Helianthus annuus HOM05D000104 ORTHO05D005769 1.5e-35 152.5 85 85.9
Rhsim03G0007000 Rhododendron simsii HOM05D000104 ORTHO05D005769 1.5e-35 152.5 85 89.4
Sc11g0006160 Simmondsia chinensis HOM05D000104 ORTHO05D005769 1.5e-35 152.5 85 87.1
Prupe.4G135700 Prunus persica HOM05D000104 ORTHO05D005769 2.0e-35 152.1 85 88.2
Duzib177G0813 Durio zibethinus HOM05D000104 ORTHO05D005769 2.6e-35 151.8 85 87.1
Lsat_1_v5_gn_1_55460 Lactuca sativa HOM05D000104 ORTHO05D005769 2.6e-35 151.8 84 86.9
Thecc.05G185200 Theobroma cacao HOM05D000104 ORTHO05D005769 2.6e-35 151.8 85 87.1
Hund17598 Selenicereus undatus HOM05D000104 ORTHO05D005769 3.4e-35 151.4 85 85.9
PGR142G4395 Punica granatum HOM05D000104 ORTHO05D005769 4.5e-35 151.0 85 85.9
Actinidia22030 Actinidia chinensis HOM05D000104 ORTHO05D005769 5.8e-35 150.6 85 89.4
Ah.13g077720 Amaranthus hybridus HOM05D000104 ORTHO05D005769 5.8e-35 150.6 84 84.5
ECA248G0087 Erigeron canadensis HOM05D000104 ORTHO05D005769 7.6e-35 150.2 85 85.9
QL07p023509 Quercus lobata HOM05D000104 ORTHO05D005769 7.6e-35 150.2 85 85.9
TAR381G0643 Trochodendron aralioides HOM05D000104 ORTHO05D005769 7.6e-35 150.2 85 87.1
EL10Ac3g07414 Beta vulgaris HOM05D000104 ORTHO05D005769 9.9e-35 149.8 84 84.5
Eucgr.K01834 Eucalyptus grandis HOM05D000104 ORTHO05D005769 9.9e-35 149.8 83 89.2
Ca_25705_v3 Cicer arietinum L. HOM05D000104 ORTHO05D005769 1.3e-34 149.4 85 85.9
COL.COLO4_22907 Corchorus olitorius HOM05D000104 ORTHO05D005769 2.2e-34 148.7 83 85.5
Nitab4.5_0003890g0020 Nicotiana tabacum HOM05D000104 ORTHO05D005769 4.9e-34 147.5 85 88.2
Oeu063882.1 Olea europaea HOM05D000104 ORTHO05D005769 4.9e-34 147.5 85 84.7
Lj5g0023468 Lotus japonicus HOM05D000104 ORTHO05D005769 6.4e-34 147.1 85 84.7
Lalb_Chr21g0316431 Lupinus albus HOM05D000104 ORTHO05D005769 8.4e-34 146.7 86 84.9
MBI10_g00720_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 8.4e-34 146.7 85 84.7
TWI23G0183 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 1.1e-33 146.4 85 84.7
MD10G1206600 Malus domestica HOM05D000104 ORTHO05D005769 1.4e-33 146.0 85 84.7
TWI14G1199 Tripterygium wilfordii HOM05D000104 ORTHO05D005769 1.4e-33 146.0 85 84.7
PSO170G6710 Papaver somniferum HOM05D000104 ORTHO05D005769 1.9e-33 145.6 85 84.7
AUR62018509 Chenopodium quinoa HOM05D000104 ORTHO05D005769 2.4e-33 145.2 84 83.3
FvH4_3g15170 Fragaria vesca HOM05D000104 ORTHO05D005769 2.4e-33 145.2 85 84.7
FAN21G3997 Fragaria x ananassa HOM05D000104 ORTHO05D005769 2.4e-33 145.2 85 84.7
FAN25G3235 Fragaria x ananassa HOM05D000104 ORTHO05D005769 2.4e-33 145.2 85 84.7
Nitab4.5_0000324g0220 Nicotiana tabacum HOM05D000104 ORTHO05D005769 2.4e-33 145.2 85 87.1
PSO528G0284 Papaver somniferum HOM05D000104 ORTHO05D005769 2.4e-33 145.2 85 84.7
unitig_26.g9068 Utricularia gibba HOM05D000104 ORTHO05D005769 2.4e-33 145.2 85 84.7
ClCG10G017460 Citrullus lanatus HOM05D000104 ORTHO05D005769 3.2e-33 144.8 85 83.5
Aqoxy4G02068 Aquilegia oxysepala HOM05D000104 ORTHO05D005769 4.2e-33 144.4 85 84.7
CiPaw.10G027000 Carya illinoinensis HOM05D000104 ORTHO05D005769 4.2e-33 144.4 85 84.7
HanXRQChr11g0348031 Helianthus annuus HOM05D000104 ORTHO05D005769 4.2e-33 144.4 85 82.4
FAN11G3896 Fragaria x ananassa HOM05D000104 ORTHO05D005769 7.1e-33 143.7 85 83.5
MBI16_g14599_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 7.1e-33 143.7 83 85.5
Solyc03g063220.2 Solanum lycopersicum HOM05D000104 ORTHO05D005769 7.1e-33 143.7 85 85.9
TPR.G27751 Trifolium pratense HOM05D000104 ORTHO05D005769 7.1e-33 143.7 85 82.4
RcHm_v2.0_Chr5g0025621 Rosa chinensis HOM05D000104 ORTHO05D005769 1.2e-32 142.9 85 83.5
CsaV3_3G038900 Cucumis sativus L. HOM05D000104 ORTHO05D005769 1.6e-32 142.5 85 82.4
Gohir.A08G227300 Gossypium hirsutum HOM05D000104 ORTHO05D005769 1.6e-32 142.5 85 83.5
Gorai.004G264200 Gossypium raimondii HOM05D000104 ORTHO05D005769 1.6e-32 142.5 85 83.5
MELO3C009633.2 Cucumis melo HOM05D000104 ORTHO05D005769 3.5e-32 141.4 85 81.2
Sopen03g015780 Solanum pennellii HOM05D000104 ORTHO05D005769 3.5e-32 141.4 85 84.7
CAN.G570.8 Capsicum annuum HOM05D000104 ORTHO05D005769 7.9e-32 140.2 85 83.5
Psat4g106680 Pisum sativum HOM05D000104 ORTHO05D005769 7.9e-32 140.2 85 80.0
ATR1152G044 Amborella trichopoda HOM05D000104 ORTHO05D005769 1.0e-31 139.8 85 80.0
MBI10_g44388_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D005769 3.0e-31 138.3 85 81.2
CDE05G0740 Ceratophyllum demersum HOM05D000104 ORTHO05D005769 1.5e-30 136.0 85 81.2
Zm00001eb187690 Zea mays HOM05D000104 ORTHO05D005769 5.6e-30 134.0 83 74.7
THA.LOC104826283 Tarenaya hassleriana HOM05D000104 ORTHO05D005769 1.6e-29 132.5 85 77.6
Medtr1g053955 Medicago truncatula HOM05D000104 ORTHO05D005769 3.7e-29 131.3 86 77.9
HPP92_024595 Vanilla planifolia HOM05D000104 ORTHO05D005769 4.8e-29 131.0 85 74.1
Aa31LG8G90 Aethionema arabicum HOM05D000104 ORTHO05D005769 6.2e-29 130.6 85 75.3
Zm00001eb251100 Zea mays HOM05D000104 ORTHO05D005769 1.1e-28 129.8 85 69.4
AT3G12810 Arabidopsis thaliana HOM05D000104 ORTHO05D005769 5.3e-28 127.5 98 69.4
Carub.0003s1217 Capsella rubella HOM05D000104 ORTHO05D005769 5.3e-28 127.5 98 69.4
Lj3C921G6 Lonicera japonica HOM05D002180 ORTHO05D001339 2.6e-27 125.2 65 93.8
Manes.15G110200 Manihot esculenta HOM05D000104 ORTHO05D005769 2.6e-27 125.2 72 84.7
Thhalv10019875m.g Eutrema salsugineum HOM05D000104 ORTHO05D005769 3.4e-27 124.8 98 67.3
AL3G24490 Arabidopsis lyrata HOM05D000104 ORTHO05D005769 4.5e-27 124.4 98 67.3
Haze_19977 Corylus avellana HOM05D000104 ORTHO05D005769 2.9e-26 121.7 64 90.6
arahy.Tifrunner.gnm1.ann1.2E0FT9 Arachis hypogaea HOM05D000104 ORTHO05D005769 3.8e-26 121.3 71 84.5
arahy.Tifrunner.gnm1.ann1.52E2E0 Arachis hypogaea HOM05D000104 ORTHO05D005769 8.4e-26 120.2 71 83.1
Peaxi162Scf00258g00431 Petunia axillaris HOM05D000104 ORTHO05D005769 8.4e-26 120.2 64 90.6
BcaB06g25509 Brassica carinata HOM05D000104 ORTHO05D005769 1.9e-25 119.0 72 77.8
BcaC05g29235 Brassica carinata HOM05D000104 ORTHO05D005769 3.2e-25 118.2 73 75.3
A05p36660 Brassica napus HOM05D000104 ORTHO05D005769 3.2e-25 118.2 73 75.3
C05p55090 Brassica napus HOM05D000104 ORTHO05D005769 3.2e-25 118.2 73 75.3
BolC5t34177H Brassica oleracea HOM05D000104 ORTHO05D005769 3.2e-25 118.2 73 75.3
BraA05t22469Z Brassica rapa HOM05D000104 ORTHO05D005769 3.2e-25 118.2 73 75.3
Cpa.g.c39138 Carica papaya HOM05D000104 ORTHO05D005769 5.5e-25 117.5 63 88.9
SHI16560 Sapria himalayana HOM05D000104 ORTHO05D005769 1.5e-19 99.4 65 69.2
AUR62020910 Chenopodium quinoa HOM05D000104 ORTHO05D005769 2.5e-17 92.0 78 62.8
Sed0012301 Sechium edule HOM05D000104 ORTHO05D005769 5.1e-15 84.3 59 76.3
Nn5g28295 Nelumbo nucifera HOM05D000104 ORTHO05D005769 1.9e-14 82.4 85 56.5
Mapoly0111s0052 Marchantia polymorpha HOM05D000104 ORTHO05D005769 3.3e-14 81.6 60 66.7
Pp3c10_13800 Physcomitrium patens HOM05D000104 ORTHO05D005769 3.3e-14 81.6 69 56.5
Gohir.D08G247700 Gossypium hirsutum HOM05D000104 ORTHO05D005769 7.4e-14 80.5 44 88.6
AagrBONN_evm.TU.Sc2ySwM_340.21 Anthoceros agrestis HOM05D000104 ORTHO05D005769 2.8e-13 78.6 73 54.8
MCO13G222 Micromonas commoda HOM05D000104 ORTHO05D005769 1.4e-07 59.7 71 46.5
MCO13G223 Micromonas commoda HOM05D000104 ORTHO05D005769 1.4e-07 59.7 71 46.5
Pp3c7_10800 Physcomitrium patens HOM05D002628 ORTHO05D002785 5.1e-07 57.8 43 58.1
Cre14.g618860 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D005769 8.8e-07 57.0 73 43.8
MSTRG.18000 Avicennia marina HOM05D002628 ORTHO05D002785 2.6e-06 55.5 58 46.6
MSTRG.12779 Avicennia marina HOM05D002628 ORTHO05D002785 3.3e-06 55.1 99 37.4
SalBow3G0995 Salvia bowleyana HOM05D002628 ORTHO05D002785 5.7e-06 54.3 58 48.3


User provided reference genes

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