Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 5.0e-51 204.1 103 100.0
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 2.2e-30 135.6 69 100.0
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.7e-27 125.9 71 87.3
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 3.9e-27 124.8 71 87.3
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 5.1e-27 124.4 71 85.9
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 5.1e-27 124.4 71 85.9
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 6.6e-27 124.0 69 89.9
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.1e-26 123.2 71 85.9
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 1.1e-26 123.2 71 85.9
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 3.3e-26 121.7 69 88.4
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 3.3e-26 121.7 69 87.0
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 3.3e-26 121.7 69 87.0
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 3.3e-26 121.7 69 87.0
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 5.6e-26 120.9 71 83.1
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 5.6e-26 120.9 71 83.1
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 7.3e-26 120.6 71 83.1
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 7.3e-26 120.6 69 87.0
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 7.3e-26 120.6 71 83.1
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 9.5e-26 120.2 71 81.7
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-25 119.8 69 84.1
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.2e-25 119.8 69 84.1
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 1.2e-25 119.8 71 81.7
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 1.2e-25 119.8 69 84.1
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 2.8e-25 118.6 79 73.4
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 3.6e-25 118.2 69 81.2
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 3.6e-25 118.2 69 82.6
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 4.7e-25 117.9 69 84.1
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 4.7e-25 117.9 69 79.7
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 4.7e-25 117.9 69 79.7
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 6.2e-25 117.5 71 77.5
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 8.1e-25 117.1 69 81.2
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 8.1e-25 117.1 69 81.2
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 8.1e-25 117.1 70 80.0
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 1.4e-24 116.3 69 81.2
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.4e-24 116.3 69 81.2
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.4e-24 116.3 69 81.2
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.4e-24 116.3 69 81.2
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 1.8e-24 115.9 69 79.7
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 2.4e-24 115.5 69 79.7
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.0e-24 114.8 69 79.7
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.0e-24 114.8 69 79.7
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 5.2e-24 114.4 69 81.2
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 5.2e-24 114.4 69 79.7
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 6.8e-24 114.0 69 78.3
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 6.8e-24 114.0 69 81.2
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 1.2e-23 113.2 68 79.4
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 3.4e-23 111.7 70 81.4
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 4.4e-23 111.3 88 64.8
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 4.4e-23 111.3 69 75.4
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 7.6e-23 110.5 69 82.6
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 7.6e-23 110.5 69 76.8
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 1.3e-22 109.8 69 81.2
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.3e-22 109.8 67 83.6
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.7e-22 109.4 69 76.8
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.7e-22 109.4 69 76.8
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 3.8e-22 108.2 69 78.3
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.9e-22 107.8 67 83.6
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.9e-22 107.8 67 83.6
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 8.4e-22 107.1 69 76.8
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 8.4e-22 107.1 69 78.3
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 8.4e-22 107.1 69 78.3
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 8.4e-22 107.1 69 78.3
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 8.4e-22 107.1 69 79.7
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.1e-21 106.7 69 76.8
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 1.1e-21 106.7 69 75.4
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 1.1e-21 106.7 69 75.4
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 1.4e-21 106.3 69 76.8
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.9e-21 105.9 69 75.4
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 1.9e-21 105.9 68 79.4
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 1.9e-21 105.9 74 73.0
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.9e-21 105.9 69 75.4
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 2.4e-21 105.5 69 76.8
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 5.4e-21 104.4 69 71.0
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 5.4e-21 104.4 69 73.9
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 5.4e-21 104.4 69 73.9
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 5.4e-21 104.4 69 73.9
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 5.4e-21 104.4 69 73.9
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 5.4e-21 104.4 69 73.9
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 7.1e-21 104.0 67 71.6
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 9.2e-21 103.6 74 74.3
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 3.5e-20 101.7 68 75.0
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 2.3e-19 99.0 69 72.5
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 7.3e-18 94.0 71 70.4
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 8.1e-17 90.5 69 68.1
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 1.1e-16 90.1 70 67.1
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.8e-16 89.4 68 69.1
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.8e-16 89.4 66 66.7
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 4.0e-16 88.2 68 67.6
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.0e-16 88.2 68 67.6
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.0e-16 88.2 68 67.6
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.0e-16 88.2 68 67.6
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 1.2e-15 86.7 69 66.7
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.2e-15 86.7 67 67.2
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.2e-15 86.7 69 65.2
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 2.0e-15 85.9 69 63.8
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 5.8e-15 84.3 68 64.7
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 7.6e-15 84.0 76 57.9
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 7.6e-15 84.0 69 62.3
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 7.6e-15 84.0 69 62.3
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 2.2e-14 82.4 68 64.7
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 1.1e-13 80.1 61 60.7
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.4e-13 79.7 69 60.9
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 1.3e-11 73.2 66 59.1
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 2.3e-11 72.4 44 79.5
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 2.3e-11 72.4 69 56.5
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 3.0e-11 72.0 75 52.0
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 3.0e-11 72.0 75 52.0
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 3.9e-11 71.6 61 54.1


User provided reference genes

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