Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 5.1e-245 851.3 665 100.0
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 4.7e-142 509.2 679 65.4
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.5e-79 300.8 333 68.2
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 4.8e-78 296.6 338 66.3
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 4.8e-78 296.6 335 66.6
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 8.2e-78 295.8 335 63.6
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 1.4e-77 295.0 337 64.7
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 9.1e-77 292.4 470 52.1
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 3.4e-76 290.4 333 65.2
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 7.7e-76 289.3 331 65.0
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.3e-75 288.5 331 64.7
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 2.9e-75 287.3 466 55.4
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.1e-74 285.4 331 67.7
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 1.9e-74 284.6 331 68.0
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 4.2e-74 283.5 474 51.9
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 2.7e-73 280.8 336 61.6
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 3.6e-73 280.4 339 63.7
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 4.7e-73 280.0 467 54.2
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 7.9e-73 279.3 331 66.5
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.8e-72 278.1 687 48.3
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 1.8e-72 278.1 472 56.1
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 1.8e-72 278.1 333 63.4
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 8.8e-72 275.8 348 62.1
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 8.8e-72 275.8 331 66.2
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 2.6e-71 274.2 331 62.8
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 4.4e-71 273.5 306 64.4
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 7.4e-71 272.7 306 66.3
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.3e-70 271.9 563 47.1
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 1.7e-70 271.6 339 63.1
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.7e-70 270.4 347 65.1
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.1e-69 268.9 362 66.6
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 2.4e-69 267.7 331 68.3
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 5.3e-69 266.5 251 70.9
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 7.0e-69 266.2 347 64.8
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 2.0e-68 264.6 251 69.3
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 2.0e-68 264.6 251 69.3
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 4.5e-68 263.5 251 68.9
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 4.5e-68 263.5 251 68.9
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.3e-67 261.9 251 68.5
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 1.3e-67 261.9 466 52.4
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.9e-67 260.8 308 67.5
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 8.5e-67 259.2 331 64.4
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 2.5e-66 257.7 334 62.6
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 4.2e-66 256.9 331 55.9
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 9.4e-66 255.8 302 61.9
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 9.4e-66 255.8 385 54.0
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 9.4e-66 255.8 333 57.7
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.2e-65 255.4 541 43.4
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 6.1e-65 253.1 331 65.6
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 3.9e-64 250.4 474 48.5
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 5.2e-64 250.0 291 60.8
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 2.0e-63 248.1 331 61.0
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 4.4e-63 246.9 343 62.7
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 7.4e-63 246.1 331 57.4
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.3e-62 245.4 226 69.0
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 1.3e-62 245.4 358 57.5
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 3.7e-62 243.8 331 58.6
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 4.8e-62 243.4 264 67.4
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 8.2e-62 242.7 231 72.7
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 1.1e-61 242.3 526 46.6
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 3.1e-61 240.7 361 59.0
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 7.0e-61 239.6 545 44.0
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 7.0e-61 239.6 333 59.8
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 9.1e-61 239.2 333 56.8
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.2e-60 238.8 308 62.7
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 1.6e-60 238.4 326 60.4
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 2.6e-60 237.7 331 59.5
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 3.5e-60 237.3 234 67.1
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 3.5e-60 237.3 559 44.0
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 3.5e-60 237.3 318 57.5
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 5.9e-60 236.5 339 62.5
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 5.9e-60 236.5 339 62.5
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 7.7e-60 236.1 478 48.5
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 1.3e-59 235.3 233 65.7
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.3e-59 235.3 240 71.7
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 1.3e-59 235.3 331 59.2
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.1e-58 232.3 330 61.2
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 1.9e-58 231.5 331 60.7
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.9e-58 231.5 330 60.9
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.9e-58 231.5 330 60.9
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.9e-58 231.5 330 60.9
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 2.5e-58 231.1 331 56.2
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 4.2e-58 230.3 331 58.6
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.2e-58 230.3 330 60.9
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 5.5e-58 229.9 331 59.2
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 6.1e-57 226.5 331 57.7
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.0e-56 225.7 251 64.5
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.0e-56 225.7 334 65.3
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 1.4e-56 225.3 301 55.8
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 4.0e-56 223.8 334 60.5
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 6.8e-56 223.0 306 58.5
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.2e-55 222.2 303 62.4
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 3.4e-55 220.7 287 58.5
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.3e-54 218.8 372 55.6
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 1.7e-54 218.4 188 70.2
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.8e-54 217.6 372 54.6
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 3.7e-54 217.2 481 46.4
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 7.0e-53 213.0 327 59.0
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 2.0e-52 211.5 327 58.7
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 5.9e-52 209.9 234 63.2
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 7.7e-52 209.5 209 71.8
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 3.8e-51 207.2 327 58.1
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-49 202.2 372 53.5
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 1.2e-49 202.2 358 53.1
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 2.3e-48 198.0 332 55.4
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.0e-48 197.2 351 52.1
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 1.6e-44 185.3 310 56.1
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 1.2e-41 175.6 164 66.5
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 4.4e-39 167.2 312 52.9
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 5.9e-36 156.8 176 56.2
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 1.5e-34 152.1 542 37.6
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 2.3e-32 144.8 174 61.5
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 2.8e-25 121.3 222 48.2
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 2.4e-21 108.2 58 87.9
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 5.6e-18 97.1 243 45.7
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 1.6e-17 95.5 248 44.0
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.5e-15 89.0 247 33.6
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 2.0e-07 62.0 82 64.6
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 2.0e-07 62.0 336 36.6
Carub.0001s4292 Capsella rubella HOM05D001023 ORTHO05D000912 2.0e-07 62.0 107 39.3
Aa31LG10G1640 Aethionema arabicum HOM05D001023 ORTHO05D000912 3.4e-07 61.2 108 38.0
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 3.4e-07 61.2 114 37.7
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 3.4e-07 61.2 114 37.7
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 5.8e-07 60.5 118 35.6
Aa31LG8G1720 Aethionema arabicum HOM05D001023 ORTHO05D000912 7.6e-07 60.1 115 37.4
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 7.6e-07 60.1 103 38.8
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 7.6e-07 60.1 103 38.8
TWI38G1104 Tripterygium wilfordii HOM05D001023 ORTHO05D000912 7.6e-07 60.1 114 36.8
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 9.9e-07 59.7 63 71.4
Gohir.A04G047000 Gossypium hirsutum HOM05D001023 ORTHO05D000912 9.9e-07 59.7 114 36.0
Gohir.A11G291200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 9.9e-07 59.7 114 36.8
Gohir.D11G301400 Gossypium hirsutum HOM05D001023 ORTHO05D000912 9.9e-07 59.7 114 36.8
Gorai.007G335300 Gossypium raimondii HOM05D001023 ORTHO05D000912 9.9e-07 59.7 114 36.8
Gorai.009G358300 Gossypium raimondii HOM05D001023 ORTHO05D000912 9.9e-07 59.7 114 36.0
THA.LOC104810411 Tarenaya hassleriana HOM05D001023 ORTHO05D000912 1.3e-06 59.3 107 35.5
Ah.04g163810 Amaranthus hybridus HOM05D001023 ORTHO05D000912 2.2e-06 58.5 114 36.8
AT1G53650 Arabidopsis thaliana HOM05D001023 ORTHO05D000912 2.2e-06 58.5 107 37.4
Thhalv10021108m.g Eutrema salsugineum HOM05D001023 ORTHO05D000912 2.2e-06 58.5 115 37.4
Lalb_Chr25g0285371 Lupinus albus HOM05D001023 ORTHO05D000912 2.2e-06 58.5 111 39.6
Thecc.07G146900 Theobroma cacao HOM05D001023 ORTHO05D000912 2.2e-06 58.5 114 36.0
Ah.04g163800 Amaranthus hybridus HOM05D001023 ORTHO05D000912 2.9e-06 58.2 114 37.7
CARHR043940 Cardamine hirsuta HOM05D001023 ORTHO05D000912 2.9e-06 58.2 107 38.3
Cfa019452 Carpinus fangiana HOM05D001023 ORTHO05D000912 2.9e-06 58.2 114 37.7
COL.COLO4_17413 Corchorus olitorius HOM05D001023 ORTHO05D000912 2.9e-06 58.2 114 36.0
Migut.M00654 Erythranthe guttata HOM05D001023 ORTHO05D000912 2.9e-06 58.2 115 37.4
Cpa.g.sc1615.2 Carica papaya HOM05D001023 ORTHO05D000912 3.8e-06 57.8 114 36.8
CDE11G0185 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 3.8e-06 57.8 98 38.8
Eucgr.F03200 Eucalyptus grandis HOM05D001023 ORTHO05D000912 3.8e-06 57.8 114 37.7
Lalb_Chr01g0016071 Lupinus albus HOM05D001023 ORTHO05D000912 3.8e-06 57.8 111 38.7
BcaB06g25380 Brassica carinata HOM05D001023 ORTHO05D000912 4.9e-06 57.4 115 36.5
Carub.0003s1418 Capsella rubella HOM05D001023 ORTHO05D000912 4.9e-06 57.4 115 36.5
CARHR089310 Cardamine hirsuta HOM05D001023 ORTHO05D000912 4.9e-06 57.4 115 37.4
CDE02G2733 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 4.9e-06 57.4 114 36.0
AUR62043090 Chenopodium quinoa HOM05D001023 ORTHO05D000912 4.9e-06 57.4 114 36.0
Lalb_Chr19g0133581 Lupinus albus HOM05D001023 ORTHO05D000912 4.9e-06 57.4 98 37.8
Lalb_Chr23g0271891 Lupinus albus HOM05D001023 ORTHO05D000912 4.9e-06 57.4 98 38.8
MBI10_g30425_MAGBIO Magnolia biondii HOM05D001023 ORTHO05D000912 4.9e-06 57.4 111 36.0
Oeu009887.2 Olea europaea HOM05D001023 ORTHO05D000912 4.9e-06 57.4 98 38.8
Phvul.009G046200 Phaseolus vulgaris HOM05D001023 ORTHO05D000912 4.9e-06 57.4 102 38.2
SGA_v2.0_scaffold181G39781 Striga asiatica HOM05D001023 ORTHO05D000912 4.9e-06 57.4 107 37.4
TPR.G26647 Trifolium pratense HOM05D001023 ORTHO05D000912 4.9e-06 57.4 114 36.8
EL10Ac4g08496 Beta vulgaris HOM05D001023 ORTHO05D000912 6.4e-06 57.0 114 35.1
C06p15190 Brassica napus HOM05D001023 ORTHO05D000912 6.4e-06 57.0 108 37.0
BolC6t36694H Brassica oleracea HOM05D001023 ORTHO05D000912 6.4e-06 57.0 108 37.0
Duzib213G0691 Durio zibethinus HOM05D001023 ORTHO05D000912 6.4e-06 57.0 114 35.1
Psat1g001960 Pisum sativum HOM05D001023 ORTHO05D000912 6.4e-06 57.0 114 36.0
GSVIVG01001961001 Vitis vinifera HOM05D001023 ORTHO05D000912 6.4e-06 57.0 114 36.0
AT3G14450 Arabidopsis thaliana HOM05D001023 ORTHO05D000912 8.4e-06 56.6 115 36.5
MSTRG.14274 Avicennia marina HOM05D001023 ORTHO05D000912 8.4e-06 56.6 108 37.0
Ciclev10021336m.g Citrus clementina HOM05D001023 ORTHO05D000912 8.4e-06 56.6 108 36.1
Glyma.15G249900 Glycine max HOM05D001023 ORTHO05D000912 8.4e-06 56.6 114 37.7
Lj3g0001297 Lotus japonicus HOM05D001023 ORTHO05D000912 8.4e-06 56.6 114 36.0
Lalb_Chr11g0067351 Lupinus albus HOM05D001023 ORTHO05D000912 8.4e-06 56.6 102 36.3
Potri.001G377500 Populus trichocarpa HOM05D001023 ORTHO05D000912 8.4e-06 56.6 114 35.1
Sp3g12760 Schrenkiella parvula HOM05D001023 ORTHO05D000912 8.4e-06 56.6 115 36.5
THA.LOC104822602 Tarenaya hassleriana HOM05D001023 ORTHO05D000912 8.4e-06 56.6 111 35.1
TAR627G0222 Trochodendron aralioides HOM05D001023 ORTHO05D000912 8.4e-06 56.6 114 33.3
TAR629G0343 Trochodendron aralioides HOM05D001023 ORTHO05D000912 8.4e-06 56.6 114 34.2
VMungo1080G0764 Vigna mungo HOM05D001023 ORTHO05D000912 8.4e-06 56.6 114 37.7
Zm00001eb338310 Zea mays HOM05D001023 ORTHO05D000912 8.4e-06 56.6 98 39.8


User provided reference genes

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