Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 8.9e-84 313.5 156 100.0
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 5.1e-79 297.7 155 94.8
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 3.6e-77 291.6 155 90.3
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 5.8e-75 284.3 155 86.5
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 1.4e-73 279.6 155 84.5
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 5.4e-73 277.7 155 83.2
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 9.2e-73 276.9 155 83.2
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 2.1e-72 275.8 155 82.6
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 6.0e-72 274.2 154 83.1
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 7.8e-72 273.9 155 82.6
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 1.0e-71 273.5 155 83.2
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.3e-71 273.1 155 83.9
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.7e-71 272.7 155 83.9
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 1.7e-71 272.7 155 81.3
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 2.3e-71 272.3 155 81.9
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 6.6e-71 270.8 155 83.2
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 1.9e-70 269.2 155 80.0
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.5e-70 268.9 155 78.7
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 3.3e-70 268.5 155 83.9
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 3.3e-70 268.5 155 78.7
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 4.3e-70 268.1 155 80.0
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 5.6e-70 267.7 155 82.6
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 7.3e-70 267.3 155 78.7
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 3.6e-69 265.0 155 81.3
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.1e-69 263.8 155 77.4
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 8.1e-69 263.8 155 77.4
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 8.1e-69 263.8 155 81.3
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 8.1e-69 263.8 155 79.4
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.8e-68 262.7 156 79.5
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 2.4e-68 262.3 155 78.7
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 3.1e-68 261.9 155 77.4
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 4.0e-68 261.5 155 78.1
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.0e-68 261.5 155 78.7
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 4.0e-68 261.5 155 79.4
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 5.2e-68 261.2 155 78.1
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 9.0e-68 260.4 155 78.7
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.5e-67 259.6 155 78.7
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 3.4e-67 258.5 155 77.4
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.3e-66 256.5 155 77.4
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.9e-66 255.4 155 76.1
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 4.9e-66 254.6 155 78.1
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 8.4e-66 253.8 156 78.2
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 8.4e-66 253.8 156 78.2
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.4e-65 253.1 155 73.5
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.9e-65 252.7 155 74.2
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 5.4e-65 251.1 155 75.5
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 5.4e-65 251.1 155 76.1
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 7.1e-65 250.8 155 74.8
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 1.2e-64 250.0 155 76.1
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 6.0e-64 247.7 174 69.0
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 7.8e-64 247.3 155 74.2
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 1.0e-63 246.9 155 74.2
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 1.7e-63 246.1 153 75.8
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 1.9e-62 242.7 155 71.6
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 2.5e-62 242.3 145 78.6
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 4.3e-62 241.5 155 72.9
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 7.3e-62 240.7 156 73.7
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 9.6e-62 240.4 155 72.3
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.3e-61 240.0 155 71.6
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 1.3e-61 240.0 155 73.5
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 1.3e-61 240.0 155 72.9
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 2.1e-61 239.2 155 73.5
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 3.6e-61 238.4 155 68.4
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 4.8e-61 238.0 155 72.3
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 6.2e-61 237.7 155 72.9
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 6.2e-61 237.7 155 72.3
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.1e-60 236.9 155 72.9
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.4e-60 236.5 155 72.3
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 1.8e-60 236.1 152 72.4
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.8e-60 236.1 155 69.7
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 2.4e-60 235.7 151 70.9
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.1e-60 235.3 155 72.3
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.0e-60 235.0 155 71.6
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 71.0
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.6e-59 232.3 155 71.0
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 4.5e-59 231.5 155 70.3
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 7.6e-59 230.7 155 71.0
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 7.6e-59 230.7 155 70.3
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 7.6e-59 230.7 155 70.3
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 7.6e-59 230.7 145 73.1
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 1.7e-58 229.6 156 70.5
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 1.7e-58 229.6 155 69.7
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.9e-58 228.8 155 70.3
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 4.9e-58 228.0 155 69.0
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.4e-58 227.6 150 74.0
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 1.4e-57 226.5 214 55.6
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 2.4e-57 225.7 152 69.7
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 2.4e-57 225.7 155 69.0
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 3.2e-57 225.3 155 70.3
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 5.4e-57 224.6 133 76.7
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 9.3e-57 223.8 152 69.7
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.1e-56 222.6 150 73.3
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 1.8e-55 219.5 133 77.4
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 2.3e-55 219.2 154 66.2
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 3.9e-55 218.4 146 74.7
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 3.3e-54 215.3 156 66.0
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 4.3e-54 214.9 127 76.4
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 5.6e-54 214.5 147 68.7
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 5.6e-54 214.5 156 66.7
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 1.6e-53 213.0 156 66.0
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 4.8e-53 211.5 147 68.0
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 4.8e-53 211.5 153 63.4
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 8.1e-53 210.7 147 67.3
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 5.3e-52 208.0 152 66.4
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 9.0e-52 207.2 156 65.4
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.5e-51 206.5 156 63.5
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 2.9e-50 202.2 156 63.5
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 1.4e-49 199.9 188 53.7
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 3.2e-49 198.7 155 63.2
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 5.5e-49 198.0 155 61.3
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 3.9e-47 191.8 162 58.6
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 3.9e-47 191.8 148 60.8
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.1e-46 190.3 152 57.9
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 2.1e-45 186.0 154 57.1
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 3.7e-45 185.3 154 56.5
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 3.7e-45 185.3 145 59.3
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 4.8e-45 184.9 154 56.5
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 8.2e-45 184.1 153 56.2
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 6.9e-44 181.0 114 76.3
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 9.0e-44 180.6 128 64.1
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 6.5e-42 174.5 153 54.9
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 4.2e-41 171.8 146 57.5
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.0e-39 167.2 99 80.8
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 3.9e-39 165.2 103 73.8
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.3e-37 160.2 91 83.5
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 2.2e-37 159.5 109 66.1
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 2.8e-37 159.1 109 67.0
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 8.2e-37 157.5 144 49.3
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 3.1e-36 155.6 104 70.2
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 9.4e-33 144.1 83 79.5
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 1.2e-32 143.7 109 63.3
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 1.1e-30 137.1 148 48.6
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 1.3e-29 133.7 148 45.3
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 8.2e-29 131.0 128 52.3
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.0e-26 124.0 152 47.4
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 3.7e-21 105.5 130 43.8
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 2.4e-20 102.8 137 40.1
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.0e-18 95.1 61 73.8
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.0e-18 95.1 61 73.8
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 9.4e-17 90.9 68 61.8
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 3.6e-16 89.0 68 63.2
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 1.4e-15 87.0 50 78.0
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 9.7e-14 80.9 129 34.9
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 8.5e-10 67.8 118 31.4
Hund09752 Selenicereus undatus HOM05D005446 ORTHO05D006597 3.3e-06 55.8 40 57.5


User provided reference genes

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