Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3A1053G47 Lonicera japonica HOM05D006564 ORTHO05D007772 4.2e-121 438.0 210 100.0
Dinv24837 Davidia involucrata HOM05D006564 ORTHO05D007772 2.9e-69 265.8 188 68.6
TAR622G0653 Trochodendron aralioides HOM05D006564 ORTHO05D007772 8.4e-61 237.7 194 60.8
Actinidia01701 Actinidia chinensis HOM05D006564 ORTHO05D007772 7.8e-59 231.1 191 62.3
Hma1.2p1_0536F.1_g173940 Hydrangea macrophylla HOM05D006564 ORTHO05D007772 3.9e-58 228.8 186 60.2
QL03p059806 Quercus lobata HOM05D006564 ORTHO05D007772 5.8e-54 214.9 196 55.6
Rhsim12G0044200 Rhododendron simsii HOM05D006564 ORTHO05D007772 9.9e-54 214.2 173 59.0
Potri.010G041900 Populus trichocarpa HOM05D006564 ORTHO05D007772 2.2e-53 213.0 188 54.8
Thecc.02G252200 Theobroma cacao HOM05D006564 ORTHO05D007772 2.9e-53 212.6 188 54.8
Atru.chr11.2047 Acer truncatum HOM05D006564 ORTHO05D007772 4.9e-53 211.8 177 58.8
Haze_12197 Corylus avellana HOM05D006564 ORTHO05D007772 4.9e-53 211.8 196 52.6
RcHm_v2.0_Chr4g0443691 Rosa chinensis HOM05D006564 ORTHO05D007772 8.4e-53 211.1 197 53.8
Gorai.010G099700 Gossypium raimondii HOM05D006564 ORTHO05D007772 7.1e-52 208.0 187 55.6
Prupe.1G251700 Prunus persica HOM05D006564 ORTHO05D007772 7.8e-51 204.5 189 56.1
MD16G1094900 Malus domestica HOM05D006564 ORTHO05D007772 2.3e-50 203.0 190 54.2
Gohir.A06G086900 Gossypium hirsutum HOM05D006564 ORTHO05D007772 3.0e-50 202.6 191 53.4
Gohir.D06G086400 Gossypium hirsutum HOM05D006564 ORTHO05D007772 6.6e-50 201.4 184 55.4
Ciclev10033458m.g Citrus clementina HOM05D006564 ORTHO05D007772 8.7e-50 201.1 187 54.0
Lsat_1_v5_gn_4_5380 Lactuca sativa HOM05D006564 ORTHO05D007772 9.6e-49 197.6 188 50.5
Migut.E00617 Erythranthe guttata HOM05D006564 ORTHO05D007772 1.6e-48 196.8 189 52.9
ECA234G3669 Erigeron canadensis HOM05D006564 ORTHO05D007772 1.1e-47 194.1 194 50.5
FAN17G1546 Fragaria x ananassa HOM05D006564 ORTHO05D007772 3.1e-47 192.6 196 49.5
FAN07G0775 Fragaria x ananassa HOM05D006564 ORTHO05D007772 2.0e-46 189.9 194 50.5
Cfa009164 Carpinus fangiana HOM05D006564 ORTHO05D007772 4.5e-46 188.7 180 52.2
CiPaw.05G152600 Carya illinoinensis HOM05D006564 ORTHO05D007772 4.5e-46 188.7 186 50.0
MBI16_g27088_MAGBIO Magnolia biondii HOM05D006564 ORTHO05D007772 4.5e-46 188.7 197 49.2
CANSAT01G1831 Cannabis sativa HOM05D006564 ORTHO05D007772 7.6e-46 188.0 190 50.0
SGA_v2.0_scaffold276G46631 Striga asiatica HOM05D006564 ORTHO05D007772 1.3e-45 187.2 191 50.8
Hund06003 Selenicereus undatus HOM05D006564 ORTHO05D007772 1.7e-45 186.8 183 52.5
Sabra10G0025500 Salix brachista HOM05D006564 ORTHO05D007772 4.9e-45 185.3 171 53.8
VMungo1215G0480 Vigna mungo HOM05D006564 ORTHO05D007772 4.9e-45 185.3 177 53.1
GSVIVG01013762001 Vitis vinifera HOM05D006564 ORTHO05D007772 8.4e-45 184.5 194 51.0
Glyma.01G029900 Glycine max HOM05D006564 ORTHO05D007772 1.9e-44 183.3 186 50.5
Lalb_Chr05g0216821 Lupinus albus HOM05D006564 ORTHO05D007772 2.4e-44 183.0 207 47.8
FvH4_4g34230 Fragaria vesca HOM05D006564 ORTHO05D007772 3.2e-44 182.6 189 49.7
HanXRQChr12g0383581 Helianthus annuus HOM05D006564 ORTHO05D007772 9.3e-44 181.0 190 46.8
Phvul.002G070600 Phaseolus vulgaris HOM05D006564 ORTHO05D007772 1.2e-43 180.6 166 52.4
Lj2g0026051 Lotus japonicus HOM05D006564 ORTHO05D007772 1.6e-43 180.3 190 48.9
TPR.G21085 Trifolium pratense HOM05D006564 ORTHO05D007772 2.1e-43 179.9 184 52.2
Medtr5g034180 Medicago truncatula HOM05D006564 ORTHO05D007772 2.7e-43 179.5 189 50.8
Aqoxy3G02914 Aquilegia oxysepala HOM05D006564 ORTHO05D007772 1.1e-41 174.1 183 48.1
Manes.13G029100 Manihot esculenta HOM05D006564 ORTHO05D007772 1.5e-41 173.7 192 49.5
PSO832G2728 Papaver somniferum HOM05D006564 ORTHO05D007772 2.5e-41 172.9 187 48.1
Sp2g04270 Schrenkiella parvula HOM05D006564 ORTHO05D007772 4.3e-41 172.2 184 46.7
Nn3g16844 Nelumbo nucifera HOM05D006564 ORTHO05D007772 5.6e-41 171.8 188 48.4
PSO063G0329 Papaver somniferum HOM05D006564 ORTHO05D007772 7.4e-41 171.4 199 46.2
BraA01t03060Z Brassica rapa HOM05D006564 ORTHO05D007772 1.3e-40 170.6 194 45.4
CARHR052570 Cardamine hirsuta HOM05D006564 ORTHO05D007772 2.1e-40 169.9 189 44.4
Oeu056406.1 Olea europaea HOM05D006564 ORTHO05D007772 3.7e-40 169.1 197 46.7
A01p29270 Brassica napus HOM05D006564 ORTHO05D007772 4.8e-40 168.7 189 46.0
Glyma.02G035501 Glycine max HOM05D006564 ORTHO05D007772 8.1e-40 167.9 152 53.9
Psat2g104680 Pisum sativum HOM05D006564 ORTHO05D007772 8.1e-40 167.9 180 50.0
AL2G16230 Arabidopsis lyrata HOM05D006564 ORTHO05D007772 1.1e-39 167.5 189 43.9
Thhalv10023451m.g Eutrema salsugineum HOM05D006564 ORTHO05D007772 1.4e-39 167.2 189 45.5
BolC1t03666H Brassica oleracea HOM05D006564 ORTHO05D007772 4.0e-39 165.6 190 45.8
C01p37040 Brassica napus HOM05D006564 ORTHO05D007772 6.9e-39 164.9 189 45.5
Migut.E00581 Erythranthe guttata HOM05D006564 ORTHO05D007772 6.9e-39 164.9 167 52.1
BcaC09g49405 Brassica carinata HOM05D006564 ORTHO05D007772 9.0e-39 164.5 189 45.5
BcaB04g20267 Brassica carinata HOM05D006564 ORTHO05D007772 2.0e-38 163.3 190 44.2
Carub.0002s0487 Capsella rubella HOM05D006564 ORTHO05D007772 2.0e-38 163.3 187 42.8
Sopen06g024060 Solanum pennellii HOM05D006564 ORTHO05D007772 2.0e-38 163.3 189 46.0
THA.LOC104827560 Tarenaya hassleriana HOM05D006564 ORTHO05D007772 2.0e-38 163.3 186 45.2
AT1G60460 Arabidopsis thaliana HOM05D006564 ORTHO05D007772 7.6e-38 161.4 189 42.3
SalBow1G6981 Salvia bowleyana HOM05D006564 ORTHO05D007772 6.5e-37 158.3 164 51.2
Aa31LG2G9990 Aethionema arabicum HOM05D006564 ORTHO05D007772 2.5e-36 156.4 189 42.3
TWI75G0104 Tripterygium wilfordii HOM05D006564 ORTHO05D007772 2.1e-35 153.3 187 46.5
EL10Ac6g13691 Beta vulgaris HOM05D006564 ORTHO05D007772 3.5e-35 152.5 190 45.3
Cc11_g15240 Coffea canephora HOM05D006564 ORTHO05D007772 4.6e-35 152.1 184 45.7
arahy.Tifrunner.gnm1.ann1.T8BVJ1 Arachis hypogaea HOM05D006564 ORTHO05D007772 7.9e-35 151.4 181 45.3
Peaxi162Scf00075g02124 Petunia axillaris HOM05D006564 ORTHO05D007772 7.4e-33 144.8 177 46.3
PGR119G0202 Punica granatum HOM05D006564 ORTHO05D007772 9.6e-33 144.4 190 44.2
Nitab4.5_0004611g0020 Nicotiana tabacum HOM05D006564 ORTHO05D007772 1.6e-32 143.7 170 45.3
Solyc06g065620.2 Solanum lycopersicum HOM05D006564 ORTHO05D007772 2.8e-32 142.9 181 44.2
COL.COLO4_24191 Corchorus olitorius HOM05D006564 ORTHO05D007772 3.7e-32 142.5 141 53.2
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 4.5e-30 135.6 190 44.2
Sed0020482 Sechium edule HOM05D006564 ORTHO05D007772 2.2e-29 133.3 185 40.0
arahy.Tifrunner.gnm1.ann1.FI0FWQ Arachis hypogaea HOM05D006564 ORTHO05D007772 8.4e-29 131.3 181 41.4
CsaV3_2G024630 Cucumis sativus L. HOM05D006564 ORTHO05D007772 2.3e-26 123.2 190 39.5
MELO3C010665.2 Cucumis melo HOM05D006564 ORTHO05D007772 7.4e-25 118.2 182 40.1
unitig_744.g23977 Utricularia gibba HOM05D006564 ORTHO05D007772 4.5e-22 109.0 144 42.4
Ca_03150_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 1.4e-18 97.4 70 62.9
Zm00001eb227420 Zea mays HOM05D006564 ORTHO05D007772 6.3e-16 88.6 119 41.2
CDE07G0681 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 1.2e-14 84.3 115 40.0
Sc04g0009220 Simmondsia chinensis HOM05D006564 ORTHO05D007772 3.4e-14 82.8 101 45.5
AUR62014056 Chenopodium quinoa HOM05D006564 ORTHO05D007772 1.6e-11 73.9 121 43.0
AUR62005394 Chenopodium quinoa HOM05D006564 ORTHO05D007772 2.7e-11 73.2 122 42.6
PGSC0003DMG401026086 Solanum tuberosum HOM05D006564 ORTHO05D007772 6.7e-10 68.6 131 37.4
Nitab4.5_0003128g0060 Nicotiana tabacum HOM05D006564 ORTHO05D007772 1.1e-09 67.8 63 52.4
Ca_03152_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 1.4e-07 60.8 72 41.7
SHI17547 Sapria himalayana HOM05D006564 ORTHO05D007772 1.2e-06 57.8 64 43.8
ATR1091G047 Amborella trichopoda HOM05D006564 ORTHO05D007772 3.5e-06 56.2 43 55.8


User provided reference genes

Program Settings