Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0026051 Lotus japonicus HOM05D006564 ORTHO05D007772 2.5e-267 924.9 470 100.0
Glyma.01G029900 Glycine max HOM05D006564 ORTHO05D007772 4.7e-205 718.0 470 76.8
Medtr5g034180 Medicago truncatula HOM05D006564 ORTHO05D007772 2.8e-197 692.2 471 76.9
TPR.G21085 Trifolium pratense HOM05D006564 ORTHO05D007772 2.6e-195 685.6 485 73.8
Psat2g104680 Pisum sativum HOM05D006564 ORTHO05D007772 1.1e-190 670.2 473 74.0
arahy.Tifrunner.gnm1.ann1.T8BVJ1 Arachis hypogaea HOM05D006564 ORTHO05D007772 3.1e-180 635.6 461 71.8
arahy.Tifrunner.gnm1.ann1.FI0FWQ Arachis hypogaea HOM05D006564 ORTHO05D007772 2.3e-167 592.8 461 68.8
VMungo1215G0480 Vigna mungo HOM05D006564 ORTHO05D007772 9.0e-164 580.9 474 64.8
QL03p059806 Quercus lobata HOM05D006564 ORTHO05D007772 3.4e-155 552.4 487 60.4
Phvul.002G070600 Phaseolus vulgaris HOM05D006564 ORTHO05D007772 8.8e-151 537.7 488 60.5
Potri.010G041900 Populus trichocarpa HOM05D006564 ORTHO05D007772 5.3e-140 501.9 463 57.0
Prupe.1G251700 Prunus persica HOM05D006564 ORTHO05D007772 9.1e-140 501.1 463 57.7
CANSAT01G1831 Cannabis sativa HOM05D006564 ORTHO05D007772 6.7e-135 485.0 454 58.1
MD16G1094900 Malus domestica HOM05D006564 ORTHO05D007772 1.5e-134 483.8 465 54.6
TAR622G0653 Trochodendron aralioides HOM05D006564 ORTHO05D007772 4.4e-134 482.3 481 55.7
FvH4_4g34230 Fragaria vesca HOM05D006564 ORTHO05D007772 5.3e-132 475.3 454 55.9
Ciclev10033458m.g Citrus clementina HOM05D006564 ORTHO05D007772 3.8e-130 469.2 453 56.5
Atru.chr11.2047 Acer truncatum HOM05D006564 ORTHO05D007772 2.3e-127 459.9 470 53.8
Gorai.010G099700 Gossypium raimondii HOM05D006564 ORTHO05D007772 6.7e-127 458.4 496 52.0
Haze_12197 Corylus avellana HOM05D006564 ORTHO05D007772 4.8e-125 452.2 476 54.4
Gohir.A06G086900 Gossypium hirsutum HOM05D006564 ORTHO05D007772 6.3e-125 451.8 460 53.7
Lalb_Chr05g0216821 Lupinus albus HOM05D006564 ORTHO05D007772 4.1e-124 449.1 348 67.8
Hma1.2p1_0536F.1_g173940 Hydrangea macrophylla HOM05D006564 ORTHO05D007772 2.7e-123 446.4 465 53.3
Gohir.D06G086400 Gossypium hirsutum HOM05D006564 ORTHO05D007772 1.1e-121 441.0 489 50.9
Dinv24837 Davidia involucrata HOM05D006564 ORTHO05D007772 3.2e-121 439.5 441 54.6
TWI75G0104 Tripterygium wilfordii HOM05D006564 ORTHO05D007772 8.8e-119 431.4 463 52.3
GSVIVG01013762001 Vitis vinifera HOM05D006564 ORTHO05D007772 1.8e-116 423.7 458 51.3
Sed0020482 Sechium edule HOM05D006564 ORTHO05D007772 5.5e-113 412.1 454 48.7
Aqoxy3G02914 Aquilegia oxysepala HOM05D006564 ORTHO05D007772 4.7e-112 409.1 456 49.1
PGR119G0202 Punica granatum HOM05D006564 ORTHO05D007772 5.2e-111 405.6 463 50.1
CARHR052570 Cardamine hirsuta HOM05D006564 ORTHO05D007772 1.5e-110 404.1 462 49.1
Nn3g16844 Nelumbo nucifera HOM05D006564 ORTHO05D007772 2.0e-110 403.7 467 49.5
Carub.0002s0487 Capsella rubella HOM05D006564 ORTHO05D007772 1.7e-106 390.6 470 48.3
Sp2g04270 Schrenkiella parvula HOM05D006564 ORTHO05D007772 1.7e-106 390.6 457 49.7
AL2G16230 Arabidopsis lyrata HOM05D006564 ORTHO05D007772 6.6e-106 388.7 459 48.4
A01p29270 Brassica napus HOM05D006564 ORTHO05D007772 1.1e-105 387.9 454 49.8
Thecc.02G252200 Theobroma cacao HOM05D006564 ORTHO05D007772 1.9e-105 387.1 334 57.8
AT1G60460 Arabidopsis thaliana HOM05D006564 ORTHO05D007772 4.3e-105 386.0 459 47.9
Thhalv10023451m.g Eutrema salsugineum HOM05D006564 ORTHO05D007772 2.1e-104 383.6 450 48.2
EL10Ac6g13691 Beta vulgaris HOM05D006564 ORTHO05D007772 2.8e-104 383.3 460 47.4
Rhsim12G0044200 Rhododendron simsii HOM05D006564 ORTHO05D007772 4.7e-104 382.5 464 48.5
RcHm_v2.0_Chr4g0443691 Rosa chinensis HOM05D006564 ORTHO05D007772 1.4e-103 380.9 331 59.8
FAN07G0775 Fragaria x ananassa HOM05D006564 ORTHO05D007772 5.2e-103 379.0 478 47.5
CiPaw.05G152600 Carya illinoinensis HOM05D006564 ORTHO05D007772 5.8e-102 375.6 378 55.0
PSO832G2728 Papaver somniferum HOM05D006564 ORTHO05D007772 7.5e-102 375.2 466 46.4
BcaC09g49405 Brassica carinata HOM05D006564 ORTHO05D007772 2.9e-101 373.2 465 47.5
Migut.E00581 Erythranthe guttata HOM05D006564 ORTHO05D007772 4.9e-101 372.5 459 47.5
Aa31LG2G9990 Aethionema arabicum HOM05D006564 ORTHO05D007772 6.4e-101 372.1 460 47.2
PSO063G0329 Papaver somniferum HOM05D006564 ORTHO05D007772 6.4e-101 372.1 476 45.8
BraA01t03060Z Brassica rapa HOM05D006564 ORTHO05D007772 1.1e-100 371.3 473 46.7
C01p37040 Brassica napus HOM05D006564 ORTHO05D007772 1.4e-100 370.9 465 47.3
THA.LOC104827560 Tarenaya hassleriana HOM05D006564 ORTHO05D007772 3.2e-100 369.8 464 46.3
Cfa009164 Carpinus fangiana HOM05D006564 ORTHO05D007772 9.2e-100 368.2 356 55.9
FAN17G1546 Fragaria x ananassa HOM05D006564 ORTHO05D007772 7.8e-99 365.2 334 56.9
BolC1t03666H Brassica oleracea HOM05D006564 ORTHO05D007772 1.7e-98 364.0 466 47.0
Manes.13G029100 Manihot esculenta HOM05D006564 ORTHO05D007772 3.3e-97 359.8 365 52.3
ECA234G3669 Erigeron canadensis HOM05D006564 ORTHO05D007772 5.6e-97 359.0 485 44.3
MBI16_g27088_MAGBIO Magnolia biondii HOM05D006564 ORTHO05D007772 5.6e-97 359.0 491 44.6
COL.COLO4_24191 Corchorus olitorius HOM05D006564 ORTHO05D007772 2.3e-95 353.6 486 44.0
Actinidia01701 Actinidia chinensis HOM05D006564 ORTHO05D007772 2.0e-94 350.5 339 56.0
SalBow1G6981 Salvia bowleyana HOM05D006564 ORTHO05D007772 3.7e-93 346.3 472 45.3
Solyc06g065620.2 Solanum lycopersicum HOM05D006564 ORTHO05D007772 3.7e-93 346.3 474 44.1
CsaV3_2G024630 Cucumis sativus L. HOM05D006564 ORTHO05D007772 4.9e-93 345.9 460 44.1
BcaB04g20267 Brassica carinata HOM05D006564 ORTHO05D007772 3.5e-91 339.7 496 43.5
MELO3C010665.2 Cucumis melo HOM05D006564 ORTHO05D007772 1.3e-90 337.8 473 43.3
SGA_v2.0_scaffold276G46631 Striga asiatica HOM05D006564 ORTHO05D007772 1.5e-89 334.3 409 46.2
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 1.4e-87 327.8 528 39.6
Peaxi162Scf00075g02124 Petunia axillaris HOM05D006564 ORTHO05D007772 3.4e-86 323.2 465 44.1
Nitab4.5_0004611g0020 Nicotiana tabacum HOM05D006564 ORTHO05D007772 7.5e-86 322.0 471 44.8
Sabra10G0025500 Salix brachista HOM05D006564 ORTHO05D007772 1.4e-84 317.8 449 42.3
Ca_03150_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 3.2e-84 316.6 224 73.7
Glyma.02G035501 Glycine max HOM05D006564 ORTHO05D007772 5.4e-84 315.8 202 73.3
Hund06003 Selenicereus undatus HOM05D006564 ORTHO05D007772 1.2e-78 298.1 315 49.2
Lsat_1_v5_gn_4_5380 Lactuca sativa HOM05D006564 ORTHO05D007772 2.9e-77 293.5 361 47.6
Cc11_g15240 Coffea canephora HOM05D006564 ORTHO05D007772 2.1e-75 287.3 459 39.4
AUR62014056 Chenopodium quinoa HOM05D006564 ORTHO05D007772 6.9e-71 272.3 463 38.7
Oeu056406.1 Olea europaea HOM05D006564 ORTHO05D007772 6.9e-71 272.3 378 42.6
AUR62005394 Chenopodium quinoa HOM05D006564 ORTHO05D007772 1.0e-66 258.5 475 37.1
Migut.E00617 Erythranthe guttata HOM05D006564 ORTHO05D007772 5.6e-57 226.1 232 50.0
unitig_744.g23977 Utricularia gibba HOM05D006564 ORTHO05D007772 2.1e-56 224.2 452 37.8
Sc04g0009220 Simmondsia chinensis HOM05D006564 ORTHO05D007772 6.9e-55 219.2 384 36.7
Sopen06g024060 Solanum pennellii HOM05D006564 ORTHO05D007772 3.5e-51 206.8 259 43.6
Lalb_Chr05g0216811 Lupinus albus HOM05D006564 ORTHO05D007772 1.1e-44 185.3 125 76.0
Lj3A1053G47 Lonicera japonica HOM05D006564 ORTHO05D007772 2.5e-44 184.1 190 48.9
Zm00001eb227420 Zea mays HOM05D006564 ORTHO05D007772 3.7e-40 170.2 246 39.8
Nitab4.5_0003128g0060 Nicotiana tabacum HOM05D006564 ORTHO05D007772 1.1e-36 158.7 196 46.4
HanXRQChr12g0383581 Helianthus annuus HOM05D006564 ORTHO05D007772 2.5e-36 157.5 182 46.2
Lj3A1053T43 Lonicera japonica HOM05D006564 ORTHO05D007772 1.1e-31 142.1 128 57.0
HPP92_021828 Vanilla planifolia HOM05D006564 ORTHO05D007772 2.9e-29 134.0 418 28.9
Cpa.g.sc69.59 Carica papaya HOM05D006564 ORTHO05D007772 8.5e-29 132.5 138 55.8
ATR1091G047 Amborella trichopoda HOM05D006564 ORTHO05D007772 2.5e-28 131.0 181 42.5
RcHm_v2.0_Chr4g0443681 Rosa chinensis HOM05D006564 ORTHO05D007772 4.2e-28 130.2 120 56.7
FAN22G1362 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.6e-27 128.3 120 55.8
PGSC0003DMG401026086 Solanum tuberosum HOM05D006564 ORTHO05D007772 2.7e-27 127.5 117 55.6
TAR374G1125 Trochodendron aralioides HOM05D006564 ORTHO05D007772 3.9e-26 123.6 119 52.1
FAN12G0482 Fragaria x ananassa HOM05D006564 ORTHO05D007772 2.0e-25 121.3 108 58.3
Eucgr.H02586 Eucalyptus grandis HOM05D006564 ORTHO05D007772 5.7e-25 119.8 102 58.8
Ca_03152_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 6.3e-24 116.3 75 70.7
Hund06002 Selenicereus undatus HOM05D006564 ORTHO05D007772 1.1e-23 115.5 144 50.7
ClCG08G018020 Citrullus lanatus HOM05D006564 ORTHO05D007772 1.5e-22 111.7 110 50.0
Actinidia01700 Actinidia chinensis HOM05D006564 ORTHO05D007772 4.2e-20 103.6 81 61.7
SHI17545 Sapria himalayana HOM05D006564 ORTHO05D007772 1.1e-15 89.0 107 43.9
Pp3c7_26620 Physcomitrium patens HOM05D006564 ORTHO05D007772 2.4e-15 87.8 447 23.9
SHI17558 Sapria himalayana HOM05D006564 ORTHO05D007772 7.0e-15 86.3 86 53.5
CDE07G0681 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 2.6e-14 84.3 290 25.2
Os06g0708200 Oryza sativa ssp. japonica HOM05D006564 ORTHO05D007772 3.5e-14 84.0 113 47.8
Mapoly0088s0064 Marchantia polymorpha HOM05D006564 ORTHO05D007772 7.7e-14 82.8 411 21.2
SHI17547 Sapria himalayana HOM05D006564 ORTHO05D007772 1.3e-13 82.0 68 52.9
HanXRQChr12g0383591 Helianthus annuus HOM05D006564 ORTHO05D007772 1.1e-12 79.0 86 52.3
CDE06G0043 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 1.9e-12 78.2 90 48.9
SEGI_21655 Sequoiadendron giganteum HOM05D006564 ORTHO05D007772 4.2e-12 77.0 164 32.9
Migut.E00618 Erythranthe guttata HOM05D006564 ORTHO05D007772 6.1e-11 73.2 72 52.8
SEGI_36736 Sequoiadendron giganteum HOM05D006564 ORTHO05D007772 8.0e-11 72.8 93 36.6
arahy.Tifrunner.gnm1.ann1.EX7DRT Arachis hypogaea HOM05D006564 ORTHO05D007772 8.8e-10 69.3 49 65.3
CBR_g8804 Chara braunii HOM05D006564 ORTHO05D007772 2.0e-09 68.2 195 23.6
Gohir.1Z049603 Gossypium hirsutum HOM05D006564 ORTHO05D007772 3.4e-09 67.4 61 60.7
Gohir.D06G182100 Gossypium hirsutum HOM05D006564 ORTHO05D007772 4.1e-07 60.5 71 50.7


User provided reference genes

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