Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 1.5e-222 776.2 486 100.0
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 3.8e-173 612.1 437 78.9
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 4.2e-172 608.6 493 75.7
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 1.3e-168 597.0 471 79.8
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 5.3e-167 591.7 431 76.8
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 1.4e-164 583.6 486 75.1
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 5.0e-157 558.5 329 89.1
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 6.5e-157 558.1 434 75.3
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 1.4e-156 557.0 500 76.6
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 2.5e-156 556.2 426 75.8
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 2.2e-152 543.1 433 69.3
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 1.2e-150 537.3 429 69.9
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 8.5e-149 531.2 433 70.4
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.7e-147 526.2 433 68.6
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 5.1e-146 521.9 475 74.3
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 8.8e-146 521.2 449 70.8
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 7.4e-145 518.1 431 69.6
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 8.2e-144 514.6 434 73.3
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 8.2e-144 514.6 444 66.7
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 1.1e-143 514.2 433 67.4
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 4.1e-143 512.3 433 68.8
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 9.1e-143 511.1 432 69.0
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 5.9e-142 508.4 432 67.4
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 1.0e-141 507.7 433 65.4
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 6.5e-141 505.0 433 66.5
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 2.5e-140 503.1 434 66.6
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 1.0e-138 497.7 430 68.8
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 1.8e-138 496.9 439 64.9
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 2.3e-138 496.5 330 80.9
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 3.0e-138 496.1 427 67.0
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 6.7e-138 495.0 411 74.9
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 8.8e-138 494.6 431 69.1
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 9.7e-137 491.1 451 65.0
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 1.3e-136 490.7 437 68.0
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 2.2e-136 490.0 480 59.4
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 4.8e-136 488.8 417 69.1
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 1.4e-135 487.3 436 67.9
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 1.8e-135 486.9 432 67.4
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 9.1e-135 484.6 434 68.2
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 2.0e-134 483.4 437 66.4
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 1.0e-133 481.1 435 67.8
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 1.3e-133 480.7 329 76.9
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.3e-133 480.7 419 66.3
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 2.2e-133 479.9 406 70.4
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 3.8e-133 479.2 433 66.5
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.9e-132 476.9 431 68.0
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 1.9e-132 476.9 385 70.1
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.9e-132 476.9 346 74.3
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 2.7e-131 473.0 432 64.6
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.7e-131 473.0 444 64.2
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 4.7e-131 472.2 421 64.8
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 1.4e-130 470.7 430 66.5
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 2.3e-130 469.9 443 62.1
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 8.8e-130 468.0 439 68.8
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 1.5e-129 467.2 399 72.2
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 1.3e-128 464.2 438 68.3
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.6e-126 457.2 313 77.0
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 2.7e-126 456.4 442 66.1
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 2.2e-125 453.4 445 60.0
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.1e-124 451.1 439 67.2
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 1.6e-123 447.2 461 63.6
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 1.6e-123 447.2 329 72.3
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 2.7e-123 446.4 349 71.1
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 4.0e-122 442.6 326 73.6
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 8.8e-122 441.4 407 69.3
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 2.0e-121 440.3 439 64.7
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 3.4e-121 439.5 327 72.8
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 7.5e-121 438.3 309 76.4
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 2.2e-120 436.8 327 72.5
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 2.8e-120 436.4 412 65.3
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 3.1e-119 433.0 361 73.1
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 2.7e-118 429.9 472 58.7
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 5.9e-118 428.7 438 65.3
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 1.3e-117 427.6 439 64.9
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 1.3e-117 427.6 456 58.3
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 6.5e-117 425.2 359 71.6
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 2.8e-115 419.9 431 57.3
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 6.1e-115 418.7 441 60.3
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 1.8e-114 417.2 301 74.1
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 4.0e-114 416.0 332 67.8
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 5.2e-114 415.6 410 64.6
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 3.4e-113 412.9 337 68.0
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 6.3e-112 408.7 291 75.6
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 8.3e-112 408.3 446 58.7
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 2.4e-111 406.8 386 67.9
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 7.0e-111 405.2 389 65.8
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 2.7e-110 403.3 386 67.6
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 3.3e-108 396.4 442 59.5
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 3.3e-108 396.4 442 59.3
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 9.5e-108 394.8 442 58.6
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 2.3e-106 390.2 593 43.8
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 3.4e-105 386.3 333 66.1
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 3.4e-105 386.3 364 60.7
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 1.7e-104 384.0 333 66.1
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 6.4e-104 382.1 337 65.3
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 6.4e-104 382.1 366 65.0
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 6.4e-104 382.1 404 59.7
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 4.1e-103 379.4 443 56.2
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 4.1e-103 379.4 289 68.5
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 7.0e-103 378.6 282 72.3
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 7.8e-102 375.2 252 78.6
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 2.3e-101 373.6 450 54.2
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 9.5e-100 368.2 444 53.2
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 4.7e-99 365.9 449 54.3
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 4.7e-99 365.9 449 54.3
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 6.2e-99 365.5 442 53.2
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 5.8e-97 359.0 362 59.9
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 7.0e-95 352.1 230 80.4
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 4.7e-91 339.3 426 50.2
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 2.5e-84 317.0 301 54.8
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 2.1e-83 313.9 430 49.5
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 2.2e-80 303.9 450 46.9
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 1.3e-77 294.7 347 51.3
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.3e-67 261.5 429 43.4
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 1.3e-64 251.5 406 47.5
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 9.3e-63 245.4 225 58.2
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 9.3e-63 245.4 331 44.7
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 3.0e-61 240.4 241 57.3
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 3.9e-61 240.0 201 62.2
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 9.3e-55 218.8 210 61.0
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 8.7e-53 212.2 381 38.3
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.4e-50 204.9 324 41.0
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.0e-45 188.7 194 59.3
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.7e-40 171.4 310 38.4
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 1.6e-30 138.3 99 73.7
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 1.6e-30 138.3 99 73.7
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 2.3e-29 134.4 201 50.2
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 6.5e-24 116.3 74 77.0
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.5e-15 87.8 84 57.1
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 2.6e-12 77.8 299 25.8
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 2.2e-11 74.7 96 50.0
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 2.2e-11 74.7 96 50.0
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 1.4e-10 72.0 61 63.9
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 7.7e-09 66.2 315 24.4
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 8.5e-08 62.8 110 42.7
Lalb_Chr05g0213591 Lupinus albus HOM05D005480 ORTHO05D006735 3.2e-07 60.8 36 83.3
GSVIVG01006101001 Vitis vinifera HOM05D005480 ORTHO05D006735 3.2e-07 60.8 67 59.7
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 5.5e-07 60.1 97 46.4
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 1.2e-06 58.9 214 29.4


User provided reference genes

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