Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0014595 Lotus japonicus HOM05D005025 ORTHO05D006499 3.2e-242 841.3 409 100.0
Lj2g0005503 Lotus japonicus HOM05D005025 ORTHO05D006499 5.2e-200 701.0 395 84.3
Medtr5g029700 Medicago truncatula HOM05D005025 ORTHO05D006499 9.9e-175 617.1 384 78.1
TPR.G8110 Trifolium pratense HOM05D005025 ORTHO05D006499 1.5e-170 603.2 376 78.7
Glyma.09G206500 Glycine max HOM05D005025 ORTHO05D006499 1.9e-170 602.8 377 76.9
Ca_08154_v3 Cicer arietinum L. HOM05D005025 ORTHO05D006499 2.8e-169 599.0 342 81.3
Psat2g137720 Pisum sativum HOM05D005025 ORTHO05D006499 4.7e-169 598.2 359 78.3
VMungo1215G2298 Vigna mungo HOM05D005025 ORTHO05D006499 3.1e-168 595.5 362 77.6
arahy.Tifrunner.gnm1.ann1.7UXP3N Arachis hypogaea HOM05D005025 ORTHO05D006499 7.8e-164 580.9 378 73.8
arahy.Tifrunner.gnm1.ann1.U5ZP0C Arachis hypogaea HOM05D005025 ORTHO05D006499 7.8e-164 580.9 378 73.8
Lalb_Chr05g0215861 Lupinus albus HOM05D005025 ORTHO05D006499 6.6e-163 577.8 403 70.7
Phvul.002G138700 Phaseolus vulgaris HOM05D005025 ORTHO05D006499 7.4e-154 547.7 362 72.9
QL12p004468 Quercus lobata HOM05D005025 ORTHO05D006499 2.6e-143 512.7 368 64.7
Prupe.5G031400 Prunus persica HOM05D005025 ORTHO05D006499 5.8e-143 511.5 363 65.6
RcHm_v2.0_Chr7g0210351 Rosa chinensis HOM05D005025 ORTHO05D006499 1.6e-140 503.4 401 61.1
Cfa012482 Carpinus fangiana HOM05D005025 ORTHO05D006499 4.6e-140 501.9 359 64.9
Dinv28982 Davidia involucrata HOM05D005025 ORTHO05D006499 4.6e-140 501.9 371 65.2
GSVIVG01013115001 Vitis vinifera HOM05D005025 ORTHO05D006499 1.3e-139 500.4 363 63.1
CSS0033528 Camellia sinensis var. sinensis HOM05D005025 ORTHO05D006499 7.4e-138 494.6 397 59.9
Hma1.2p1_0303F.1_g118820 Hydrangea macrophylla HOM05D005025 ORTHO05D006499 9.7e-138 494.2 367 64.0
CiPaw.12G066500 Carya illinoinensis HOM05D005025 ORTHO05D006499 1.3e-137 493.8 364 64.6
Ciclev10011251m.g Citrus clementina HOM05D005025 ORTHO05D006499 6.3e-137 491.5 378 61.4
CANSAT21G2346 Cannabis sativa HOM05D005025 ORTHO05D006499 1.1e-136 490.7 395 58.7
FAN18G0071 Fragaria x ananassa HOM05D005025 ORTHO05D006499 1.8e-136 490.0 366 63.7
MD06G1037600 Malus domestica HOM05D005025 ORTHO05D006499 1.8e-136 490.0 372 62.6
Haze_08183 Corylus avellana HOM05D005025 ORTHO05D006499 3.1e-136 489.2 385 60.8
Eucgr.E00258 Eucalyptus grandis HOM05D005025 ORTHO05D006499 4.1e-136 488.8 363 63.1
Cc08_g03170 Coffea canephora HOM05D005025 ORTHO05D006499 6.9e-136 488.0 395 59.5
FAN18G0203 Fragaria x ananassa HOM05D005025 ORTHO05D006499 6.9e-136 488.0 365 63.6
FvH4_5g22580 Fragaria vesca HOM05D005025 ORTHO05D006499 1.5e-135 486.9 366 63.4
Atru.chr6.1624 Acer truncatum HOM05D005025 ORTHO05D006499 5.9e-135 485.0 394 59.6
Lj2A235G62 Lonicera japonica HOM05D005025 ORTHO05D006499 1.0e-134 484.2 405 59.0
Hund14353 Selenicereus undatus HOM05D005025 ORTHO05D006499 1.0e-134 484.2 392 58.7
Lsat_1_v5_gn_3_19020 Lactuca sativa HOM05D005025 ORTHO05D006499 2.2e-134 483.0 392 58.7
Gohir.A12G207300 Gossypium hirsutum HOM05D005025 ORTHO05D006499 6.5e-134 481.5 369 60.4
Actinidia25983 Actinidia chinensis HOM05D005025 ORTHO05D006499 8.5e-134 481.1 369 63.4
Thecc.03G306700 Theobroma cacao HOM05D005025 ORTHO05D006499 2.5e-133 479.6 367 61.0
Gohir.D12G209700 Gossypium hirsutum HOM05D005025 ORTHO05D006499 7.2e-133 478.0 369 59.9
Manes.17G009400 Manihot esculenta HOM05D005025 ORTHO05D006499 7.2e-133 478.0 388 58.5
FAN08G2980 Fragaria x ananassa HOM05D005025 ORTHO05D006499 9.4e-133 477.6 362 62.2
Gorai.008G225300 Gossypium raimondii HOM05D005025 ORTHO05D006499 2.1e-132 476.5 369 59.6
Duzib068G0767 Durio zibethinus HOM05D005025 ORTHO05D006499 1.4e-131 473.8 404 56.7
HanXRQChr17g0538241 Helianthus annuus HOM05D005025 ORTHO05D006499 2.3e-131 473.0 389 58.4
EL10Ac5g12057 Beta vulgaris HOM05D005025 ORTHO05D006499 3.9e-131 472.2 369 59.1
Potri.001G139400 Populus trichocarpa HOM05D005025 ORTHO05D006499 8.8e-131 471.1 368 60.9
Cpa.g.sc90.18 Carica papaya HOM05D005025 ORTHO05D006499 1.1e-130 470.7 326 66.0
CAN.G1522.5 Capsicum annuum HOM05D005025 ORTHO05D006499 1.5e-130 470.3 364 60.4
Nn3g19421 Nelumbo nucifera HOM05D005025 ORTHO05D006499 3.3e-130 469.2 405 57.3
Sed0025660 Sechium edule HOM05D005025 ORTHO05D006499 3.3e-130 469.2 397 57.4
Cpa.g.sc90.19 Carica papaya HOM05D005025 ORTHO05D006499 5.7e-130 468.4 406 56.2
THA.LOC104814425 Tarenaya hassleriana HOM05D005025 ORTHO05D006499 5.7e-130 468.4 380 58.9
Lsat_1_v5_gn_3_18960 Lactuca sativa HOM05D005025 ORTHO05D006499 6.3e-129 464.9 393 56.0
TAR636G2380 Trochodendron aralioides HOM05D005025 ORTHO05D006499 1.8e-128 463.4 370 60.3
MELO3C003429.2 Cucumis melo HOM05D005025 ORTHO05D006499 4.1e-128 462.2 403 57.8
PSO063G6878 Papaver somniferum HOM05D005025 ORTHO05D006499 5.3e-128 461.8 397 57.4
SalBow6G4293 Salvia bowleyana HOM05D005025 ORTHO05D006499 5.3e-128 461.8 397 56.2
ClCG09G011740 Citrullus lanatus HOM05D005025 ORTHO05D006499 6.9e-128 461.5 400 57.5
Sc22g0001670 Simmondsia chinensis HOM05D005025 ORTHO05D006499 6.9e-128 461.5 385 56.6
AUR62018689 Chenopodium quinoa HOM05D005025 ORTHO05D006499 9.1e-128 461.1 333 62.5
PSO782G1926 Papaver somniferum HOM05D005025 ORTHO05D006499 9.1e-128 461.1 384 58.6
Peaxi162Scf00045g00139 Petunia axillaris HOM05D005025 ORTHO05D006499 1.3e-126 457.2 390 58.5
PGSC0003DMG400017847 Solanum tuberosum HOM05D005025 ORTHO05D006499 1.7e-126 456.8 361 59.0
Nitab4.5_0000556g0080 Nicotiana tabacum HOM05D005025 ORTHO05D006499 2.2e-126 456.4 396 57.1
Aa31LG2G13680 Aethionema arabicum HOM05D005025 ORTHO05D006499 3.8e-126 455.7 386 55.2
CsaV3_3G048940 Cucumis sativus L. HOM05D005025 ORTHO05D006499 5.0e-126 455.3 397 57.2
Nitab4.5_0010978g0020 Nicotiana tabacum HOM05D005025 ORTHO05D006499 6.5e-126 454.9 400 57.0
CARHR031710 Cardamine hirsuta HOM05D005025 ORTHO05D006499 3.2e-125 452.6 375 56.3
BcaC05g27877 Brassica carinata HOM05D005025 ORTHO05D006499 2.7e-124 449.5 383 56.1
C05p38840 Brassica napus HOM05D005025 ORTHO05D006499 2.7e-124 449.5 383 56.1
MSTRG.12173 Avicennia marina HOM05D005025 ORTHO05D006499 4.7e-124 448.7 371 55.3
Sp1g28560 Schrenkiella parvula HOM05D005025 ORTHO05D006499 7.9e-124 448.0 393 54.7
AT1G32340 Arabidopsis thaliana HOM05D005025 ORTHO05D006499 1.4e-123 447.2 398 53.0
Thhalv10007022m.g Eutrema salsugineum HOM05D005025 ORTHO05D006499 1.8e-123 446.8 388 55.2
Solyc08g005150.3 Solanum lycopersicum HOM05D005025 ORTHO05D006499 1.8e-123 446.8 379 57.0
BcaB03g13744 Brassica carinata HOM05D005025 ORTHO05D006499 6.7e-123 444.9 397 53.7
Carub.0001s3071 Capsella rubella HOM05D005025 ORTHO05D006499 1.5e-122 443.7 387 54.0
BraA05t21382Z Brassica rapa HOM05D005025 ORTHO05D006499 4.4e-122 442.2 397 54.4
Sopen08g001160 Solanum pennellii HOM05D005025 ORTHO05D006499 5.7e-122 441.8 405 54.8
Sabra01G0108400 Salix brachista HOM05D005025 ORTHO05D006499 1.7e-121 440.3 393 54.5
A05p24990 Brassica napus HOM05D005025 ORTHO05D006499 3.7e-121 439.1 397 54.2
AUR62007316 Chenopodium quinoa HOM05D005025 ORTHO05D006499 4.1e-120 435.6 378 55.8
TWI60G0579 Tripterygium wilfordii HOM05D005025 ORTHO05D006499 2.0e-119 433.3 360 58.3
Rhsim11G0018800 Rhododendron simsii HOM05D005025 ORTHO05D006499 2.2e-118 429.9 374 56.4
Migut.A01080 Erythranthe guttata HOM05D005025 ORTHO05D006499 3.8e-118 429.1 399 51.9
SGA_v2.0_scaffold36G14307 Striga asiatica HOM05D005025 ORTHO05D006499 5.0e-118 428.7 379 53.8
ECA246G3826 Erigeron canadensis HOM05D005025 ORTHO05D006499 6.1e-116 421.8 374 52.9
Aqoxy3G02374 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 8.0e-116 421.4 367 54.5
ATR0829G096 Amborella trichopoda HOM05D005025 ORTHO05D006499 3.9e-115 419.1 395 52.2
DCAR_032084 Daucus carota HOM05D005025 ORTHO05D006499 5.7e-114 415.2 347 53.9
BolC5t32623H Brassica oleracea HOM05D005025 ORTHO05D006499 1.3e-110 404.1 321 59.2
TAR629G1702 Trochodendron aralioides HOM05D005025 ORTHO05D006499 1.7e-110 403.7 275 64.0
PSO104G0015 Papaver somniferum HOM05D005025 ORTHO05D006499 2.1e-108 396.7 409 47.4
PSO104G0071 Papaver somniferum HOM05D005025 ORTHO05D006499 2.1e-108 396.7 409 47.4
PSO104G0167 Papaver somniferum HOM05D005025 ORTHO05D006499 4.7e-108 395.6 409 47.2
SGA_v2.0_scaffold198G41083 Striga asiatica HOM05D005025 ORTHO05D006499 8.0e-108 394.8 390 48.7
unitig_32.g11504 Utricularia gibba HOM05D005025 ORTHO05D006499 6.8e-107 391.7 432 46.8
PSO782G4765 Papaver somniferum HOM05D005025 ORTHO05D006499 1.2e-106 391.0 379 49.6
Ciclev10013841m.g Citrus clementina HOM05D005025 ORTHO05D006499 1.5e-106 390.6 388 49.5
SEGI_40920 Sequoiadendron giganteum HOM05D005025 ORTHO05D006499 9.7e-106 387.9 404 49.8
PSO104G0107 Papaver somniferum HOM05D005025 ORTHO05D006499 2.1e-100 370.2 401 46.6
ATR0829G033 Amborella trichopoda HOM05D005025 ORTHO05D006499 6.1e-100 368.6 391 47.3
Oeu028876.1 Olea europaea HOM05D005025 ORTHO05D006499 5.2e-99 365.5 245 64.1
Zm00001eb072220 Zea mays HOM05D005025 ORTHO05D006499 6.8e-99 365.2 366 47.5
CARHR103750 Cardamine hirsuta HOM05D005025 ORTHO05D006499 1.8e-96 357.1 405 46.7
Carub.0245s0001 Capsella rubella HOM05D005025 ORTHO05D006499 2.4e-96 356.7 309 51.5
CAN.G1522.7 Capsicum annuum HOM05D005025 ORTHO05D006499 5.4e-96 355.5 308 55.2
HPP92_025674 Vanilla planifolia HOM05D005025 ORTHO05D006499 1.7e-94 350.5 397 45.3
PSO729G0276 Papaver somniferum HOM05D005025 ORTHO05D006499 6.8e-91 338.6 397 45.6
TPR.G18487 Trifolium pratense HOM05D005025 ORTHO05D006499 9.8e-90 334.7 198 78.8
Mapoly0124s0022 Marchantia polymorpha HOM05D005025 ORTHO05D006499 6.1e-84 315.5 380 41.6
DCAR_021701 Daucus carota HOM05D005025 ORTHO05D006499 2.3e-78 297.0 220 58.6
SMO358G0265 Selaginella moellendorffii HOM05D005025 ORTHO05D006499 3.3e-77 293.1 375 42.1
Zm00001eb251320 Zea mays HOM05D005025 ORTHO05D006499 8.3e-73 278.5 364 39.3
AagrBONN_evm.TU.Sc2ySwM_344.4817 Anthoceros agrestis HOM05D005025 ORTHO05D006499 3.2e-72 276.6 364 38.5
Os02g0694700 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D006499 1.5e-66 257.7 297 41.8
PSO384G4548 Papaver somniferum HOM05D005025 ORTHO05D006499 2.0e-66 257.3 393 35.6
TPR.G8112 Trifolium pratense HOM05D005025 ORTHO05D006499 2.9e-65 253.4 129 87.6
CBR_g37671 Chara braunii HOM05D005025 ORTHO05D006499 5.4e-64 249.2 278 42.4
COL.COLO4_16974 Corchorus olitorius HOM05D005025 ORTHO05D006499 2.4e-59 233.8 392 35.7
CBR_g40898 Chara braunii HOM05D005025 ORTHO05D006499 1.4e-56 224.6 268 39.9
Os04g0593700 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D037041 1.2e-47 194.9 226 43.4
Sabra15G0076800 Salix brachista HOM05D005025 ORTHO05D006499 1.6e-47 194.5 179 53.6
CAN.G1522.10 Capsicum annuum HOM05D005025 ORTHO05D006499 2.1e-47 194.1 127 66.1
HanXRQChr17g0538251 Helianthus annuus HOM05D005025 ORTHO05D006499 1.0e-46 191.8 132 62.1
AagrBONN_evm.TU.Sc2ySwM_344.5411 Anthoceros agrestis HOM05D005025 ORTHO05D006499 1.4e-43 181.4 197 44.7
AagrBONN_evm.TU.Sc2ySwM_344.3587 Anthoceros agrestis HOM05D005025 ORTHO05D006499 9.0e-43 178.7 375 30.4
Pp3c6_18080 Physcomitrium patens HOM05D005025 ORTHO05D006499 2.0e-42 177.6 163 46.6
Glyma.01G016200 Glycine max HOM05D005025 ORTHO05D006499 5.6e-37 159.5 93 74.2
HanXRQChr17g0538221 Helianthus annuus HOM05D005025 ORTHO05D006499 1.1e-35 155.2 139 48.9
MCO11G741 Micromonas commoda HOM05D005025 ORTHO05D006499 1.4e-35 154.8 359 29.2
Cre01.g018900 Chlamydomonas reinhardtii HOM05D005025 ORTHO05D006499 1.8e-35 154.5 293 28.3
Glyma.01G016300 Glycine max HOM05D005025 ORTHO05D006499 4.9e-33 146.4 89 77.5
TPR.G26369 Trifolium pratense HOM05D005025 ORTHO05D006499 2.5e-32 144.1 88 72.7
Cfa023405 Carpinus fangiana HOM05D005025 ORTHO05D006499 2.2e-17 94.4 248 23.8
arahy.Tifrunner.gnm1.ann1.NE9TLW Arachis hypogaea HOM05D000327 ORTHO05D000218 6.7e-14 82.8 144 29.2
arahy.Tifrunner.gnm1.ann1.XA1YL7 Arachis hypogaea HOM05D000327 ORTHO05D000218 7.4e-13 79.3 134 28.4
QL05p001758 Quercus lobata HOM05D000327 ORTHO05D000218 2.8e-12 77.4 174 27.0
Glyma.16G012800 Glycine max HOM05D000327 ORTHO05D000218 4.8e-12 76.6 166 29.5
QL05p001483 Quercus lobata HOM05D000327 ORTHO05D000218 6.3e-12 76.3 133 30.1
AT3G14250 Arabidopsis thaliana HOM05D000327 ORTHO05D000218 8.2e-12 75.9 136 29.4
Duzib160G0693 Durio zibethinus HOM05D000327 ORTHO05D000218 1.8e-11 74.7 161 27.3
EL10Ac7g16482 Beta vulgaris HOM05D000327 ORTHO05D000218 3.1e-11 73.9 156 28.8
Carub.0003s1394 Capsella rubella HOM05D000327 ORTHO05D000218 3.1e-11 73.9 136 28.7
CiPaw.02G131800 Carya illinoinensis HOM05D000327 ORTHO05D000218 5.3e-11 73.2 137 29.2
Sp3g12540 Schrenkiella parvula HOM05D000327 ORTHO05D000218 5.3e-11 73.2 137 27.7
Lsat_1_v5_gn_1_38881 Lactuca sativa HOM05D000327 ORTHO05D000218 1.2e-10 72.0 155 29.7
VMungo0331G0791 Vigna mungo HOM05D000327 ORTHO05D000218 1.5e-10 71.6 221 25.8
Migut.F01617 Erythranthe guttata HOM05D000554 ORTHO05D000860 2.6e-10 70.9 138 30.4
Migut.F01633 Erythranthe guttata HOM05D000554 ORTHO05D000860 2.6e-10 70.9 138 30.4
arahy.Tifrunner.gnm1.ann1.Y4HIMP Arachis hypogaea HOM05D000327 ORTHO05D000218 4.5e-10 70.1 121 26.4
CBR_g37201 Chara braunii HOM05D011976 ORTHO05D014012 5.9e-10 69.7 140 28.6
Aqoxy7G00949 Aquilegia oxysepala HOM05D000327 ORTHO05D000218 3.8e-09 67.0 120 30.0
HanXRQChr11g0322541 Helianthus annuus HOM05D000554 ORTHO05D000860 1.1e-08 65.5 139 25.2
Lj6P761T22 Lonicera japonica HOM05D000554 ORTHO05D000860 1.1e-08 65.5 144 25.0
Sed0015139 Sechium edule HOM05D000327 ORTHO05D000218 1.1e-08 65.5 146 27.4
Aqoxy5G02273 Aquilegia oxysepala HOM05D000554 ORTHO05D000860 1.4e-08 65.1 136 25.0
Os04g0593600 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D006499 1.4e-08 65.1 44 65.9
CAN.G837.29 Capsicum annuum HOM05D000327 ORTHO05D000218 4.2e-08 63.5 134 29.9
MD09G1173800 Malus domestica HOM05D000327 ORTHO05D000218 4.2e-08 63.5 120 30.0
Peaxi162Scf00274g00446 Petunia axillaris HOM05D000327 ORTHO05D000218 7.2e-08 62.8 134 29.1
Rhsim04G0115400 Rhododendron simsii HOM05D000327 ORTHO05D000218 7.2e-08 62.8 134 29.1
Os04g0593800 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D037041 2.1e-07 61.2 67 44.8
HanXRQChr04g0127751 Helianthus annuus HOM05D000327 ORTHO05D000218 2.7e-07 60.8 139 28.1
TAR629G0481 Trochodendron aralioides HOM05D005025 ORTHO05D037041 4.7e-07 60.1 83 44.6
COL.COLO4_07327 Corchorus olitorius HOM05D000327 ORTHO05D000218 7.9e-07 59.3 141 27.0
Atru.chr7.1774 Acer truncatum HOM05D000327 ORTHO05D000218 1.4e-06 58.5 121 28.9
arahy.Tifrunner.gnm1.ann1.C70R4U Arachis hypogaea HOM05D000327 ORTHO05D000218 6.7e-06 56.2 91 28.6
Actinidia24436 Actinidia chinensis HOM05D000327 ORTHO05D011243 8.8e-06 55.8 99 28.3


User provided reference genes

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