Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 2.9e-301 1037.7 498 100.0
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 2.7e-259 898.3 504 84.1
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 9.0e-255 883.2 503 84.5
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 8.4e-253 876.7 501 82.8
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 2.5e-249 865.1 502 83.1
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 7.9e-243 843.6 494 81.8
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 3.0e-242 841.6 486 82.3
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 6.7e-242 840.5 495 81.6
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 4.3e-241 837.8 497 80.7
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 4.1e-231 804.7 494 78.5
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 1.2e-230 803.1 489 78.7
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 3.4e-230 801.6 501 77.2
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 3.6e-227 791.6 492 76.4
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 1.5e-225 786.2 498 75.5
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 2.0e-225 785.8 498 75.3
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 2.6e-225 785.4 493 75.5
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 9.7e-225 783.5 498 75.9
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 1.7e-224 782.7 487 77.0
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 2.8e-224 781.9 485 76.7
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 1.1e-223 780.0 481 75.5
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 2.4e-223 778.9 497 76.1
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 2.6e-222 775.4 493 75.7
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 2.6e-222 775.4 481 76.3
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 3.5e-222 775.0 492 75.2
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 1.0e-221 773.5 490 76.3
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 1.1e-220 770.0 485 76.3
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 1.5e-220 769.6 491 76.0
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 1.5e-220 769.6 481 74.0
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 3.2e-220 768.5 498 74.9
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 5.5e-220 767.7 494 75.5
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 8.0e-219 763.8 507 73.6
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 8.8e-218 760.4 477 76.7
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.1e-217 760.0 487 74.7
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 2.6e-217 758.8 486 73.9
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 4.4e-217 758.1 502 73.9
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 7.4e-217 757.3 482 74.3
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 7.4e-217 757.3 524 71.0
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 2.8e-216 755.4 519 71.7
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 4.8e-216 754.6 500 73.4
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 5.3e-215 751.1 492 73.6
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 7.0e-215 750.7 490 75.1
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 2.6e-214 748.8 490 72.4
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 3.5e-214 748.4 485 74.6
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 3.5e-214 748.4 494 73.7
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 5.9e-214 747.7 506 71.5
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 5.9e-214 747.7 484 73.3
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 1.7e-213 746.1 485 74.0
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 2.9e-213 745.3 486 73.0
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 6.5e-213 744.2 485 73.6
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 8.5e-213 743.8 487 73.7
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 7.2e-212 740.7 484 72.7
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 7.2e-212 740.7 485 73.2
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 4.7e-211 738.0 485 72.2
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 4.7e-211 738.0 529 69.6
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 1.4e-210 736.5 484 72.3
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 2.3e-210 735.7 484 71.7
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 3.0e-210 735.3 483 72.3
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 3.0e-210 735.3 518 70.8
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 5.2e-210 734.6 495 71.9
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 1.2e-209 733.4 460 77.4
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 7.5e-209 730.7 485 72.8
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 3.7e-208 728.4 495 72.1
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 8.3e-208 727.2 492 72.4
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 1.4e-207 726.5 497 70.2
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 1.0e-205 720.3 484 70.7
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 2.2e-205 719.2 489 73.2
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 3.8e-205 718.4 525 67.8
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 1.8e-202 709.5 553 65.1
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 1.5e-201 706.4 490 69.2
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 5.7e-201 704.5 523 67.5
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 1.1e-199 700.3 504 67.7
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 1.4e-199 699.9 435 77.5
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 2.0e-198 696.0 472 70.3
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 2.9e-197 692.2 453 72.8
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 6.6e-197 691.0 486 67.1
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 2.5e-196 689.1 474 71.9
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 3.0e-194 682.2 455 72.3
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 3.4e-193 678.7 573 61.3
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 4.4e-193 678.3 494 68.2
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 2.9e-189 665.6 517 66.2
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 2.9e-189 665.6 488 66.0
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 3.9e-189 665.2 467 66.8
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 3.4e-185 652.1 474 64.8
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 8.3e-184 647.5 497 66.4
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 2.7e-182 642.5 492 63.8
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 3.5e-182 642.1 508 64.6
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 3.0e-181 639.0 389 81.0
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 4.3e-180 635.2 499 64.3
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 7.3e-180 634.4 504 62.9
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 4.7e-179 631.7 477 63.7
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 1.3e-176 623.6 477 62.1
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.5e-169 600.1 484 63.8
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 1.2e-166 590.5 392 73.5
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 1.4e-162 577.0 483 62.3
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 8.9e-162 574.3 391 72.6
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 3.8e-160 568.9 387 74.2
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 3.2e-159 565.8 385 71.7
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 1.7e-157 560.1 384 71.1
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 2.1e-155 553.1 474 58.9
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 6.6e-149 531.6 393 67.7
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 1.1e-148 530.8 481 55.5
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 4.2e-143 512.3 361 69.0
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 4.8e-139 498.8 326 72.4
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 9.3e-135 484.6 481 53.8
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 2.2e-128 463.4 354 65.8
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 4.8e-123 445.7 456 51.1
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 1.5e-121 440.7 366 60.7
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 2.9e-120 436.4 387 58.1
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 4.2e-119 432.6 247 81.4
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 7.2e-119 431.8 437 50.1
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 7.4e-116 421.8 288 69.8
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 4.2e-111 406.0 280 69.6
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 3.1e-106 389.8 357 57.4
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 5.2e-93 345.9 187 81.3
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 3.3e-71 273.5 160 80.0
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 1.0e-64 251.9 494 35.0
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 4.3e-47 193.4 112 76.8
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 8.9e-45 185.7 94 83.0
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 3.0e-32 144.1 105 68.6
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 5.1e-32 143.3 93 71.0
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.3e-30 138.7 81 77.8
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 6.2e-30 136.3 69 84.1
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 4.9e-27 126.7 254 33.9
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 4.9e-27 126.7 126 51.6
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.5e-23 115.2 97 60.8
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 2.8e-22 110.9 91 60.4
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 6.9e-21 106.3 204 33.3
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 5.3e-13 80.1 54 77.8
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 9.3e-10 69.3 49 67.3


User provided reference genes

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