Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 0.0e+00 1253.4 928 100.0
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 4.4e-239 832.0 893 64.7
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 8.1e-233 811.2 940 68.3
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 1.1e-232 810.8 847 68.1
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 3.5e-228 795.8 780 72.7
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 2.8e-225 786.2 956 62.9
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 1.5e-215 753.8 787 72.9
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 4.2e-213 745.7 776 71.5
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 1.4e-208 730.7 937 65.1
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 6.9e-208 728.4 879 64.7
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 3.4e-207 726.1 774 70.5
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 4.6e-204 715.7 908 62.8
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.4e-197 694.1 774 69.6
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 1.1e-176 624.8 795 62.0
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 1.0e-174 618.2 806 58.8
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.1e-173 614.8 799 58.8
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 3.2e-173 613.2 735 59.3
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 9.4e-173 611.7 802 59.9
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 4.7e-172 609.4 792 61.6
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 1.7e-169 600.9 795 59.2
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 1.6e-167 594.3 955 53.0
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 2.2e-166 590.5 797 59.0
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 6.8e-163 578.9 785 61.7
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 2.6e-162 577.0 801 50.3
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 4.1e-160 569.7 803 57.9
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.0e-158 565.1 831 57.4
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.1e-157 561.6 812 56.0
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 2.5e-157 560.5 798 59.4
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 3.3e-157 560.1 797 53.7
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 3.3e-157 560.1 798 55.0
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.1e-156 557.4 798 58.6
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.0e-155 555.1 811 55.9
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.4e-155 554.7 841 59.1
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.8e-155 554.3 834 59.1
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 1.5e-154 551.2 798 61.2
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 9.8e-154 548.5 790 57.2
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 2.2e-153 547.4 792 58.8
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 6.3e-153 545.8 835 54.0
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 5.4e-152 542.7 781 57.6
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.0e-152 542.3 786 56.6
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 2.0e-151 540.8 820 57.4
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 2.0e-151 540.8 803 59.7
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.8e-151 538.9 835 53.9
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 1.7e-150 537.7 812 56.9
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 8.6e-150 535.4 784 58.2
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.5e-149 534.6 792 56.6
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 6.1e-148 529.3 804 62.2
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 8.0e-148 528.9 811 56.6
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.0e-147 528.5 1007 49.8
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 1.0e-147 528.5 786 55.9
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 1.4e-147 528.1 792 55.2
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 7.5e-146 522.3 763 58.2
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.3e-145 521.5 781 58.3
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.9e-144 517.7 781 58.8
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 5.4e-144 516.2 803 55.5
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 1.2e-143 515.0 783 56.3
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.0e-143 514.2 806 53.7
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 6.6e-142 509.2 799 54.7
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.6e-140 504.6 825 52.6
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 8.0e-140 502.3 796 51.3
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 8.9e-139 498.8 843 48.2
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 6.0e-135 486.1 801 50.9
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 7.8e-135 485.7 789 58.3
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 1.0e-134 485.3 861 52.7
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 8.6e-134 482.3 798 50.1
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 8.6e-134 482.3 809 53.9
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 5.6e-133 479.6 801 48.7
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 1.6e-132 478.0 717 57.2
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 6.2e-132 476.1 797 57.2
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 8.1e-132 475.7 812 53.0
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 5.2e-131 473.0 809 52.3
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 1.5e-130 471.5 806 52.5
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 6.4e-129 466.1 796 50.5
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 8.3e-129 465.7 795 51.7
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 8.3e-129 465.7 777 54.3
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.2e-127 461.8 801 48.3
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 2.5e-125 454.1 804 48.9
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 3.3e-125 453.8 815 54.0
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 4.3e-125 453.4 800 50.4
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 2.1e-124 451.1 800 53.0
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.4e-123 448.4 811 47.0
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 3.4e-122 443.7 814 51.8
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 4.9e-121 439.9 802 53.7
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 8.4e-121 439.1 806 52.7
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 3.2e-120 437.2 937 50.6
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.0e-118 432.2 805 51.7
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 1.3e-118 431.8 811 51.9
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 2.3e-118 431.0 804 51.7
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 3.9e-118 430.3 843 44.5
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 5.1e-118 429.9 815 52.9
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 8.7e-118 429.1 805 50.9
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 2.5e-117 427.6 806 53.0
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 3.3e-117 427.2 813 49.7
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 3.3e-117 427.2 798 49.0
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 4.3e-117 426.8 773 48.6
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 4.3e-117 426.8 846 41.8
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 9.6e-117 425.6 789 51.5
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.4e-115 421.8 808 51.2
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 2.6e-114 417.5 811 49.4
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 3.4e-114 417.2 809 49.9
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 9.9e-114 415.6 942 47.3
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 9.9e-114 415.6 942 47.3
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 5.4e-112 409.8 798 52.8
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 7.1e-112 409.5 806 52.7
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.2e-111 408.7 812 49.6
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.3e-110 405.2 808 52.1
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 3.9e-110 403.7 783 52.4
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.9e-109 401.4 825 50.4
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 9.0e-107 392.5 805 46.6
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 1.1e-104 385.6 792 48.6
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 3.5e-103 380.6 813 52.3
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 2.5e-101 374.4 820 44.8
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.0e-97 362.5 790 46.7
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 7.4e-85 319.7 721 50.5
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 9.7e-85 319.3 847 44.9
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 2.8e-84 317.8 850 46.9
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 1.1e-83 315.8 811 45.1
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.1e-83 315.8 731 37.3
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 2.4e-83 314.7 285 60.7
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 6.7e-78 296.6 581 53.0
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 9.7e-77 292.7 285 61.4
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 4.1e-75 287.3 844 42.7
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 9.4e-72 276.2 698 42.3
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 3.5e-66 257.7 317 53.3
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 4.5e-58 230.7 237 62.4
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 7.7e-58 229.9 287 52.6
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 8.0e-55 219.9 272 52.2
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.0e-54 218.0 799 39.3
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 2.7e-47 194.9 261 44.8
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 6.8e-46 190.3 284 50.7
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.3e-44 186.0 314 43.3
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 5.0e-41 174.1 195 57.4
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 6.6e-41 173.7 291 42.3
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 1.5e-40 172.6 160 58.1
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 1.3e-28 132.9 131 64.9
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 7.0e-27 127.1 73 87.7
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.5e-24 119.4 71 83.1
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 7.1e-19 100.5 93 47.3
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 2.0e-13 82.4 86 48.8
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.3e-12 79.7 128 42.2
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.4e-11 76.3 146 34.2
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 1.2e-10 73.2 115 35.7
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 2.7e-10 72.0 184 29.3
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.6e-10 71.2 69 59.4
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 6.6e-09 67.4 87 48.3
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 2.1e-07 62.4 144 37.5
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 6.2e-07 60.8 143 37.1


User provided reference genes

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