Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 5.2e-238 828.2 747 100.0
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 4.9e-156 555.8 715 79.6
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 9.6e-152 541.6 717 79.4
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 1.9e-147 527.3 716 78.5
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 2.3e-137 493.8 713 77.3
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.1e-134 485.0 715 75.8
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 2.4e-134 483.8 715 76.1
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 1.2e-130 471.5 722 77.6
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 7.4e-128 462.2 746 73.6
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 1.3e-127 461.5 635 81.3
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 3.5e-125 453.4 743 72.3
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 2.1e-122 444.1 747 72.8
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 2.1e-122 444.1 730 75.8
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 7.4e-120 435.6 687 69.6
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 3.7e-119 433.3 722 75.2
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.6e-117 427.9 710 72.3
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 1.0e-116 425.2 681 73.6
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 6.5e-116 422.5 677 75.3
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 1.9e-115 421.0 399 59.6
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 7.2e-115 419.1 623 74.6
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 2.1e-114 417.5 708 74.2
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 4.7e-114 416.4 677 76.5
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 8.0e-114 415.6 716 73.3
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 3.0e-113 413.7 618 79.9
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 3.0e-113 413.7 731 72.4
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 5.2e-113 412.9 619 78.8
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 1.2e-112 411.8 716 72.5
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 2.6e-112 410.6 619 78.8
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 3.4e-112 410.2 370 60.8
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 5.7e-112 409.5 686 73.0
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 7.5e-112 409.1 711 72.9
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.4e-110 404.8 724 70.6
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 1.4e-110 404.8 724 71.0
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 7.0e-110 402.5 721 70.5
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 9.1e-110 402.1 724 70.4
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 1.7e-108 397.9 622 77.0
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 6.5e-108 396.0 717 71.1
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 4.2e-107 393.3 622 77.3
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 1.2e-106 391.7 689 71.6
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 2.7e-106 390.6 698 71.6
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.0e-104 384.4 621 65.9
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 4.4e-104 383.3 626 76.2
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 1.7e-103 381.3 721 70.3
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 4.1e-102 376.7 464 71.3
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 9.1e-102 375.6 709 69.7
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.6e-101 374.8 593 77.1
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 2.7e-101 374.0 549 83.4
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.3e-100 371.7 729 68.4
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 2.3e-100 370.9 619 76.9
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 3.8e-100 370.2 726 68.2
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 9.5e-99 365.5 624 75.8
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 3.6e-98 363.6 623 75.1
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 6.8e-97 359.4 625 74.4
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 6.8e-97 359.4 709 70.2
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.2e-96 358.6 556 83.5
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 2.0e-96 357.8 716 68.6
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 7.5e-96 355.9 623 75.8
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 1.7e-95 354.8 734 62.9
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 2.2e-95 354.4 609 76.4
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 2.2e-95 354.4 632 73.3
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 2.2e-95 354.4 699 69.1
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 6.3e-95 352.8 712 68.0
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 7.0e-94 349.4 709 68.3
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 1.6e-93 348.2 714 65.3
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 2.7e-93 347.4 411 74.0
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 2.9e-92 344.0 624 75.3
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.5e-91 341.7 622 73.6
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 5.6e-91 339.7 621 73.3
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 8.0e-90 335.9 739 60.8
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 4.0e-89 333.6 626 72.5
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 1.5e-88 331.6 623 71.7
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 4.4e-88 330.1 625 72.5
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 2.2e-87 327.8 715 68.0
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 6.4e-87 326.2 689 68.4
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 8.3e-87 325.9 562 76.7
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 1.1e-86 325.5 625 69.9
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 2.4e-86 324.3 370 47.0
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 3.5e-85 320.5 617 67.7
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 3.5e-85 320.5 707 63.4
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 3.5e-85 320.5 562 76.5
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 7.8e-85 319.3 617 67.4
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 1.3e-84 318.5 617 66.9
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 5.0e-84 316.6 617 66.9
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 6.6e-84 316.2 708 60.5
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 1.9e-83 314.7 617 66.8
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 5.6e-83 313.2 716 63.3
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 4.7e-82 310.1 716 65.4
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.8e-81 308.1 372 47.0
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 2.6e-80 304.3 670 67.2
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 4.4e-80 303.5 381 48.3
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 1.9e-78 298.1 673 66.9
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 2.4e-78 297.7 274 56.9
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 7.8e-77 292.7 422 58.5
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 1.3e-76 292.0 219 63.0
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 2.1e-74 284.6 626 70.4
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 1.4e-73 282.0 501 83.0
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 2.3e-68 264.6 503 83.5
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 8.7e-52 209.5 486 78.8
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 3.3e-51 207.6 340 60.0
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 3.1e-49 201.1 504 73.6
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 4.2e-46 190.7 541 67.1
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 1.3e-42 179.1 394 92.4
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 4.8e-42 177.2 178 56.7
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.3e-36 159.1 128 57.8
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 1.0e-28 132.9 234 32.5
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 6.5e-23 113.6 201 32.3
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 2.7e-21 108.2 81 67.9
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 1.1e-19 102.8 78 66.7
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 2.5e-19 101.7 73 72.6
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 4.5e-16 90.9 73 64.4
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 1.9e-14 85.5 74 58.1
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.0e-12 79.7 65 64.6
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 7.4e-11 73.6 54 66.7
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 1.2e-08 66.2 146 28.1
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 3.5e-08 64.7 151 27.2
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 7.7e-08 63.5 143 25.9
Potri.006G166200 Populus trichocarpa HOM05D003056 ORTHO05D003422 1.7e-07 62.4 125 27.2
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 2.2e-07 62.0 139 25.2
Aa31LG8G12930 Aethionema arabicum HOM05D003056 ORTHO05D003422 5.0e-07 60.8 178 24.7
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 5.0e-07 60.8 145 24.8
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 5.0e-07 60.8 155 22.6
Prupe.5G218700 Prunus persica HOM05D002453 ORTHO05D008746 5.0e-07 60.8 129 24.8
TPR.G32181 Trifolium pratense HOM05D000001 ORTHO05D000003 5.0e-07 60.8 123 26.8
PGR004G0301 Punica granatum HOM05D000001 ORTHO05D000003 6.5e-07 60.5 129 27.1
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 6.5e-07 60.5 119 37.8
Rhsim12G0158500 Rhododendron simsii HOM05D003056 ORTHO05D003422 8.5e-07 60.1 145 22.1
ATR0618G281 Amborella trichopoda HOM05D003056 ORTHO05D003422 1.1e-06 59.7 132 27.3
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 1.1e-06 59.7 145 23.4
Sabra16G0186300 Salix brachista HOM05D003056 ORTHO05D003422 1.1e-06 59.7 171 23.4
Manes.10G074400 Manihot esculenta HOM05D003056 ORTHO05D003422 1.5e-06 59.3 153 24.8
Sabra06G0127800 Salix brachista HOM05D003056 ORTHO05D003422 1.5e-06 59.3 125 24.8
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 1.9e-06 58.9 145 23.4
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 1.9e-06 58.9 144 23.6
Nn5g30488 Nelumbo nucifera HOM05D003056 ORTHO05D003422 1.9e-06 58.9 135 25.9
Atru.chr7.865 Acer truncatum HOM05D003056 ORTHO05D003422 2.5e-06 58.5 161 24.2
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.5e-06 58.5 50 60.0
CsaV3_7G007980 Cucumis sativus L. HOM05D003056 ORTHO05D003422 2.5e-06 58.5 130 23.8
Gohir.A05G004100 Gossypium hirsutum HOM05D003056 ORTHO05D003422 2.5e-06 58.5 145 23.4
Gohir.D05G004500 Gossypium hirsutum HOM05D003056 ORTHO05D003422 2.5e-06 58.5 145 23.4
Gorai.009G004300 Gossypium raimondii HOM05D003056 ORTHO05D003422 2.5e-06 58.5 145 23.4
Ca_15350_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 3.2e-06 58.2 123 26.8
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 3.2e-06 58.2 161 23.6
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 3.2e-06 58.2 125 27.2
RcHm_v2.0_Chr6g0254201 Rosa chinensis HOM05D003056 ORTHO05D003422 3.2e-06 58.2 118 25.4
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 4.2e-06 57.8 121 26.4
Cc02_g19560 Coffea canephora HOM05D003056 ORTHO05D003422 4.2e-06 57.8 131 26.7
DCAR_029110 Daucus carota HOM05D003056 ORTHO05D003422 4.2e-06 57.8 154 26.6
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 4.2e-06 57.8 142 24.6
Oeu009681.2 Olea europaea HOM05D003056 ORTHO05D003422 4.2e-06 57.8 130 28.5
Sc10g0007430 Simmondsia chinensis HOM05D006749 ORTHO05D008352 4.2e-06 57.8 123 31.7
Ah.09g230000 Amaranthus hybridus HOM05D003056 ORTHO05D003422 5.5e-06 57.4 117 25.6
SalBow2G2076 Salvia bowleyana HOM05D003056 ORTHO05D003422 5.5e-06 57.4 135 24.4
FvH4_2g04590 Fragaria vesca HOM05D003056 ORTHO05D003422 7.2e-06 57.0 118 25.4
FAN15G3015 Fragaria x ananassa HOM05D003056 ORTHO05D003422 7.2e-06 57.0 118 25.4
FAN24G1521 Fragaria x ananassa HOM05D003056 ORTHO05D003422 7.2e-06 57.0 118 25.4
Potri.001G297300 Populus trichocarpa HOM05D003056 ORTHO05D003422 7.2e-06 57.0 171 23.4
Potri.009G092100 Populus trichocarpa HOM05D003056 ORTHO05D003422 7.2e-06 57.0 247 22.7
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 7.2e-06 57.0 145 26.2
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 7.2e-06 57.0 121 26.4
TAR628G0528 Trochodendron aralioides HOM05D003056 ORTHO05D003422 7.2e-06 57.0 136 27.9
CANSAT80G2044 Cannabis sativa HOM05D000001 ORTHO05D000003 9.4e-06 56.6 122 28.7
CANSAT80G2863 Cannabis sativa HOM05D000001 ORTHO05D000003 9.4e-06 56.6 122 28.7
CBR_g38428 Chara braunii HOM05D006217 ORTHO05D021269 9.4e-06 56.6 105 32.4
Eucgr.A02864 Eucalyptus grandis HOM05D000001 ORTHO05D010370 9.4e-06 56.6 96 33.3
Eucgr.C02384 Eucalyptus grandis HOM05D003056 ORTHO05D003422 9.4e-06 56.6 117 27.4
MD10G1101600 Malus domestica HOM05D003056 ORTHO05D003422 9.4e-06 56.6 130 26.2
Peaxi162Scf00016g02611 Petunia axillaris HOM05D003056 ORTHO05D003422 9.4e-06 56.6 103 30.1
RcHm_v2.0_Chr2g0164271 Rosa chinensis HOM05D000001 ORTHO05D000003 9.4e-06 56.6 123 26.8


User provided reference genes

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