Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0005503 Lotus japonicus HOM05D005025 ORTHO05D006499 4.0e-265 917.5 462 100.0
Lj2g0014595 Lotus japonicus HOM05D005025 ORTHO05D006499 4.5e-200 701.4 395 84.3
Medtr5g029700 Medicago truncatula HOM05D005025 ORTHO05D006499 4.0e-180 635.2 368 81.8
Glyma.09G206500 Glycine max HOM05D005025 ORTHO05D006499 5.4e-177 624.8 399 74.4
TPR.G8110 Trifolium pratense HOM05D005025 ORTHO05D006499 1.9e-174 616.3 376 79.0
Psat2g137720 Pisum sativum HOM05D005025 ORTHO05D006499 2.5e-174 615.9 356 80.3
VMungo1215G2298 Vigna mungo HOM05D005025 ORTHO05D006499 4.2e-174 615.1 456 66.7
Ca_08154_v3 Cicer arietinum L. HOM05D005025 ORTHO05D006499 8.0e-173 610.9 342 81.9
arahy.Tifrunner.gnm1.ann1.7UXP3N Arachis hypogaea HOM05D005025 ORTHO05D006499 2.8e-170 602.4 381 75.1
arahy.Tifrunner.gnm1.ann1.U5ZP0C Arachis hypogaea HOM05D005025 ORTHO05D006499 2.8e-170 602.4 381 75.1
Lalb_Chr05g0215861 Lupinus albus HOM05D005025 ORTHO05D006499 1.5e-166 590.1 394 72.3
Phvul.002G138700 Phaseolus vulgaris HOM05D005025 ORTHO05D006499 1.8e-156 556.6 361 73.4
QL12p004468 Quercus lobata HOM05D005025 ORTHO05D006499 4.4e-147 525.4 369 64.8
Cfa012482 Carpinus fangiana HOM05D005025 ORTHO05D006499 9.8e-147 524.2 371 64.4
Prupe.5G031400 Prunus persica HOM05D005025 ORTHO05D006499 1.1e-145 520.8 366 66.4
RcHm_v2.0_Chr7g0210351 Rosa chinensis HOM05D005025 ORTHO05D006499 1.2e-144 517.3 398 62.1
Haze_08183 Corylus avellana HOM05D005025 ORTHO05D006499 3.9e-143 512.3 387 61.8
GSVIVG01013115001 Vitis vinifera HOM05D005025 ORTHO05D006499 3.9e-143 512.3 370 62.2
FAN18G0071 Fragaria x ananassa HOM05D005025 ORTHO05D006499 3.3e-142 509.2 371 66.0
Eucgr.E00258 Eucalyptus grandis HOM05D005025 ORTHO05D006499 4.3e-142 508.8 370 63.8
Dinv28982 Davidia involucrata HOM05D005025 ORTHO05D006499 1.2e-141 507.3 365 65.2
FAN18G0203 Fragaria x ananassa HOM05D005025 ORTHO05D006499 2.1e-141 506.5 368 66.0
FvH4_5g22580 Fragaria vesca HOM05D005025 ORTHO05D006499 2.8e-141 506.1 371 65.8
FAN08G2980 Fragaria x ananassa HOM05D005025 ORTHO05D006499 1.1e-140 504.2 368 65.2
Atru.chr6.1624 Acer truncatum HOM05D005025 ORTHO05D006499 6.8e-140 501.5 389 59.9
CSS0033528 Camellia sinensis var. sinensis HOM05D005025 ORTHO05D006499 1.2e-139 500.7 397 59.4
CiPaw.12G066500 Carya illinoinensis HOM05D005025 ORTHO05D006499 2.0e-139 500.0 399 59.6
Manes.17G009400 Manihot esculenta HOM05D005025 ORTHO05D006499 2.6e-139 499.6 380 60.0
Hma1.2p1_0303F.1_g118820 Hydrangea macrophylla HOM05D005025 ORTHO05D006499 8.4e-138 494.6 360 63.9
Gohir.A12G207300 Gossypium hirsutum HOM05D005025 ORTHO05D006499 1.4e-137 493.8 400 58.5
Lj2A235G62 Lonicera japonica HOM05D005025 ORTHO05D006499 1.9e-137 493.4 413 58.4
Hund14353 Selenicereus undatus HOM05D005025 ORTHO05D006499 1.9e-137 493.4 398 58.8
CANSAT21G2346 Cannabis sativa HOM05D005025 ORTHO05D006499 2.4e-137 493.0 367 61.3
Potri.001G139400 Populus trichocarpa HOM05D005025 ORTHO05D006499 4.1e-137 492.3 401 58.1
MD06G1037600 Malus domestica HOM05D005025 ORTHO05D006499 7.1e-137 491.5 371 62.8
Gohir.D12G209700 Gossypium hirsutum HOM05D005025 ORTHO05D006499 9.2e-137 491.1 399 58.1
Thecc.03G306700 Theobroma cacao HOM05D005025 ORTHO05D006499 9.2e-137 491.1 477 53.0
Cc08_g03170 Coffea canephora HOM05D005025 ORTHO05D006499 3.5e-136 489.2 453 54.5
Gorai.008G225300 Gossypium raimondii HOM05D005025 ORTHO05D006499 4.6e-136 488.8 399 57.9
Lsat_1_v5_gn_3_19020 Lactuca sativa HOM05D005025 ORTHO05D006499 4.6e-136 488.8 404 58.2
Ciclev10011251m.g Citrus clementina HOM05D005025 ORTHO05D006499 1.0e-135 487.6 380 59.5
CAN.G1522.5 Capsicum annuum HOM05D005025 ORTHO05D006499 3.0e-135 486.1 365 60.5
Cpa.g.sc90.19 Carica papaya HOM05D005025 ORTHO05D006499 6.6e-135 485.0 387 59.2
Nn3g19421 Nelumbo nucifera HOM05D005025 ORTHO05D006499 1.1e-134 484.2 406 58.6
Actinidia25983 Actinidia chinensis HOM05D005025 ORTHO05D006499 1.5e-134 483.8 390 59.7
HanXRQChr17g0538241 Helianthus annuus HOM05D005025 ORTHO05D006499 1.5e-134 483.8 369 61.5
Cpa.g.sc90.18 Carica papaya HOM05D005025 ORTHO05D006499 1.9e-134 483.4 326 68.1
Nitab4.5_0000556g0080 Nicotiana tabacum HOM05D005025 ORTHO05D006499 1.2e-133 480.7 401 57.4
ClCG09G011740 Citrullus lanatus HOM05D005025 ORTHO05D006499 2.1e-133 479.9 389 59.1
THA.LOC104814425 Tarenaya hassleriana HOM05D005025 ORTHO05D006499 2.8e-133 479.6 399 57.9
EL10Ac5g12057 Beta vulgaris HOM05D005025 ORTHO05D006499 3.6e-133 479.2 366 59.6
PGSC0003DMG400017847 Solanum tuberosum HOM05D005025 ORTHO05D006499 2.4e-132 476.5 366 59.8
MELO3C003429.2 Cucumis melo HOM05D005025 ORTHO05D006499 4.0e-132 475.7 382 59.7
Sed0025660 Sechium edule HOM05D005025 ORTHO05D006499 4.0e-132 475.7 403 56.1
Nitab4.5_0010978g0020 Nicotiana tabacum HOM05D005025 ORTHO05D006499 8.9e-132 474.6 413 55.7
AUR62018689 Chenopodium quinoa HOM05D005025 ORTHO05D006499 1.5e-131 473.8 334 63.8
CsaV3_3G048940 Cucumis sativus L. HOM05D005025 ORTHO05D006499 2.6e-131 473.0 373 60.3
TAR636G2380 Trochodendron aralioides HOM05D005025 ORTHO05D006499 3.4e-131 472.6 390 58.2
Duzib068G0767 Durio zibethinus HOM05D005025 ORTHO05D006499 4.4e-131 472.2 452 52.7
Peaxi162Scf00045g00139 Petunia axillaris HOM05D005025 ORTHO05D006499 5.8e-131 471.9 365 60.8
CARHR031710 Cardamine hirsuta HOM05D005025 ORTHO05D006499 1.3e-130 470.7 400 56.0
Solyc08g005150.3 Solanum lycopersicum HOM05D005025 ORTHO05D006499 1.4e-129 467.2 366 59.6
Aa31LG2G13680 Aethionema arabicum HOM05D005025 ORTHO05D006499 1.9e-129 466.8 400 55.2
AT1G32340 Arabidopsis thaliana HOM05D005025 ORTHO05D006499 2.4e-129 466.5 400 54.8
Lsat_1_v5_gn_3_18960 Lactuca sativa HOM05D005025 ORTHO05D006499 5.4e-129 465.3 397 56.7
PSO782G1926 Papaver somniferum HOM05D005025 ORTHO05D006499 9.3e-129 464.5 404 55.0
SalBow6G4293 Salvia bowleyana HOM05D005025 ORTHO05D006499 1.6e-128 463.8 405 55.1
Sc22g0001670 Simmondsia chinensis HOM05D005025 ORTHO05D006499 2.1e-128 463.4 361 57.6
Sopen08g001160 Solanum pennellii HOM05D005025 ORTHO05D006499 2.1e-128 463.4 366 59.0
PSO063G6878 Papaver somniferum HOM05D005025 ORTHO05D006499 1.3e-127 460.7 403 55.1
BcaC05g27877 Brassica carinata HOM05D005025 ORTHO05D006499 1.7e-127 460.3 355 59.4
C05p38840 Brassica napus HOM05D005025 ORTHO05D006499 1.7e-127 460.3 355 59.4
BcaB03g13744 Brassica carinata HOM05D005025 ORTHO05D006499 2.3e-127 459.9 374 57.8
Thhalv10007022m.g Eutrema salsugineum HOM05D005025 ORTHO05D006499 8.7e-127 458.0 458 50.7
Sp1g28560 Schrenkiella parvula HOM05D005025 ORTHO05D006499 1.1e-126 457.6 457 50.5
MSTRG.12173 Avicennia marina HOM05D005025 ORTHO05D006499 1.5e-126 457.2 385 54.0
Carub.0001s3071 Capsella rubella HOM05D005025 ORTHO05D006499 1.5e-126 457.2 401 53.6
BraA05t21382Z Brassica rapa HOM05D005025 ORTHO05D006499 2.5e-126 456.4 355 59.2
A05p24990 Brassica napus HOM05D005025 ORTHO05D006499 9.6e-126 454.5 355 58.9
Sabra01G0108400 Salix brachista HOM05D005025 ORTHO05D006499 7.6e-123 444.9 425 51.5
TWI60G0579 Tripterygium wilfordii HOM05D005025 ORTHO05D006499 6.4e-122 441.8 360 58.1
ECA246G3826 Erigeron canadensis HOM05D005025 ORTHO05D006499 3.2e-121 439.5 412 52.4
AUR62007316 Chenopodium quinoa HOM05D005025 ORTHO05D006499 7.1e-121 438.3 389 55.3
SGA_v2.0_scaffold36G14307 Striga asiatica HOM05D005025 ORTHO05D006499 8.7e-119 431.4 401 52.4
Aqoxy3G02374 Aquilegia oxysepala HOM05D005025 ORTHO05D006499 1.9e-118 430.3 461 49.0
Migut.A01080 Erythranthe guttata HOM05D005025 ORTHO05D006499 2.8e-117 426.4 367 53.7
Rhsim11G0018800 Rhododendron simsii HOM05D005025 ORTHO05D006499 6.2e-117 425.2 393 53.2
DCAR_032084 Daucus carota HOM05D005025 ORTHO05D006499 1.4e-116 424.1 343 54.8
ATR0829G096 Amborella trichopoda HOM05D005025 ORTHO05D006499 1.5e-115 420.6 375 53.3
BolC5t32623H Brassica oleracea HOM05D005025 ORTHO05D006499 8.4e-114 414.8 321 59.8
TAR629G1702 Trochodendron aralioides HOM05D005025 ORTHO05D006499 8.4e-114 414.8 275 65.5
PSO104G0015 Papaver somniferum HOM05D005025 ORTHO05D006499 4.3e-110 402.5 372 50.0
PSO104G0071 Papaver somniferum HOM05D005025 ORTHO05D006499 4.3e-110 402.5 372 50.0
PSO104G0167 Papaver somniferum HOM05D005025 ORTHO05D006499 9.6e-110 401.4 372 49.7
unitig_32.g11504 Utricularia gibba HOM05D005025 ORTHO05D006499 8.1e-109 398.3 423 47.8
Ciclev10013841m.g Citrus clementina HOM05D005025 ORTHO05D006499 6.9e-108 395.2 389 49.1
SGA_v2.0_scaffold198G41083 Striga asiatica HOM05D005025 ORTHO05D006499 2.0e-107 393.7 396 47.7
PSO782G4765 Papaver somniferum HOM05D005025 ORTHO05D006499 7.6e-107 391.7 408 45.6
SEGI_40920 Sequoiadendron giganteum HOM05D005025 ORTHO05D006499 9.3e-105 384.8 396 49.5
PSO104G0107 Papaver somniferum HOM05D005025 ORTHO05D006499 1.8e-103 380.6 363 49.9
CAN.G1522.7 Capsicum annuum HOM05D005025 ORTHO05D006499 3.9e-103 379.4 308 57.5
ATR0829G033 Amborella trichopoda HOM05D005025 ORTHO05D006499 5.7e-102 375.6 410 45.4
Oeu028876.1 Olea europaea HOM05D005025 ORTHO05D006499 6.9e-100 368.6 245 64.1
Zm00001eb072220 Zea mays HOM05D005025 ORTHO05D006499 6.9e-100 368.6 348 49.1
Carub.0245s0001 Capsella rubella HOM05D005025 ORTHO05D006499 3.4e-99 366.3 316 52.5
CARHR103750 Cardamine hirsuta HOM05D005025 ORTHO05D006499 2.2e-98 363.6 382 47.9
HPP92_025674 Vanilla planifolia HOM05D005025 ORTHO05D006499 7.9e-96 355.1 404 46.0
TPR.G18487 Trifolium pratense HOM05D005025 ORTHO05D006499 6.7e-95 352.1 198 82.3
PSO729G0276 Papaver somniferum HOM05D005025 ORTHO05D006499 4.5e-91 339.3 403 43.2
Mapoly0124s0022 Marchantia polymorpha HOM05D005025 ORTHO05D006499 8.2e-85 318.5 381 42.0
DCAR_021701 Daucus carota HOM05D005025 ORTHO05D006499 6.7e-79 298.9 220 58.2
SMO358G0265 Selaginella moellendorffii HOM05D005025 ORTHO05D006499 5.3e-76 289.3 364 41.2
AagrBONN_evm.TU.Sc2ySwM_344.4817 Anthoceros agrestis HOM05D005025 ORTHO05D006499 1.3e-74 284.6 368 38.6
Zm00001eb251320 Zea mays HOM05D005025 ORTHO05D006499 1.5e-73 281.2 364 39.3
Os02g0694700 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D006499 3.7e-69 266.5 336 40.8
TPR.G8112 Trifolium pratense HOM05D005025 ORTHO05D006499 1.7e-66 257.7 129 89.1
PSO384G4548 Papaver somniferum HOM05D005025 ORTHO05D006499 1.6e-64 251.1 390 35.6
CBR_g37671 Chara braunii HOM05D005025 ORTHO05D006499 6.1e-64 249.2 278 42.1
COL.COLO4_16974 Corchorus olitorius HOM05D005025 ORTHO05D006499 1.5e-62 244.6 394 35.5
CBR_g40898 Chara braunii HOM05D005025 ORTHO05D006499 5.5e-57 226.1 268 39.6
Sabra15G0076800 Salix brachista HOM05D005025 ORTHO05D006499 6.6e-50 202.6 179 54.2
Os04g0593700 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D037041 1.5e-49 201.4 222 44.1
HanXRQChr17g0538251 Helianthus annuus HOM05D005025 ORTHO05D006499 4.0e-47 193.4 132 62.9
AagrBONN_evm.TU.Sc2ySwM_344.3587 Anthoceros agrestis HOM05D005025 ORTHO05D006499 5.2e-47 193.0 294 35.7
CAN.G1522.10 Capsicum annuum HOM05D005025 ORTHO05D006499 1.7e-45 188.0 127 63.0
AagrBONN_evm.TU.Sc2ySwM_344.5411 Anthoceros agrestis HOM05D005025 ORTHO05D006499 1.4e-44 184.9 170 48.8
Pp3c6_18080 Physcomitrium patens HOM05D005025 ORTHO05D006499 1.3e-42 178.3 154 48.7
Cre01.g018900 Chlamydomonas reinhardtii HOM05D005025 ORTHO05D006499 5.2e-39 166.4 294 29.9
MCO11G741 Micromonas commoda HOM05D005025 ORTHO05D006499 1.5e-38 164.9 286 31.5
Glyma.01G016200 Glycine max HOM05D005025 ORTHO05D006499 2.0e-38 164.5 93 77.4
HanXRQChr17g0538221 Helianthus annuus HOM05D005025 ORTHO05D006499 3.2e-36 157.1 141 49.6
TPR.G26369 Trifolium pratense HOM05D005025 ORTHO05D006499 6.0e-35 152.9 88 76.1
Glyma.01G016300 Glycine max HOM05D005025 ORTHO05D006499 3.9e-34 150.2 89 78.7
Cfa023405 Carpinus fangiana HOM05D005025 ORTHO05D006499 4.3e-17 93.6 245 24.1
arahy.Tifrunner.gnm1.ann1.NE9TLW Arachis hypogaea HOM05D000327 ORTHO05D000218 5.8e-14 83.2 153 26.1
BraA05t22324Z Brassica rapa HOM05D000327 ORTHO05D000218 2.9e-13 80.9 136 29.4
Thhalv10021980m.g Eutrema salsugineum HOM05D000327 ORTHO05D000218 8.4e-13 79.3 142 28.9
Ah.08g217300 Amaranthus hybridus HOM05D000327 ORTHO05D000218 1.9e-12 78.2 148 30.4
arahy.Tifrunner.gnm1.ann1.XA1YL7 Arachis hypogaea HOM05D000327 ORTHO05D000218 1.9e-12 78.2 149 25.5
BcaC05g29097 Brassica carinata HOM05D000327 ORTHO05D000218 9.3e-12 75.9 138 28.3
C05p53080 Brassica napus HOM05D000327 ORTHO05D000218 9.3e-12 75.9 138 28.3
BolC5t33988H Brassica oleracea HOM05D000327 ORTHO05D000218 9.3e-12 75.9 138 28.3
CARHR089170 Cardamine hirsuta HOM05D000327 ORTHO05D000218 9.3e-12 75.9 150 28.0
EL10Ac7g16482 Beta vulgaris HOM05D000327 ORTHO05D000218 1.2e-11 75.5 136 30.1
BcaB06g25398 Brassica carinata HOM05D000327 ORTHO05D000218 1.2e-11 75.5 138 27.5
Thhalv10022329m.g Eutrema salsugineum HOM05D000327 ORTHO05D000218 2.7e-11 74.3 135 28.1
CBR_g37201 Chara braunii HOM05D011976 ORTHO05D014012 3.5e-11 73.9 140 30.7
Sp3g12540 Schrenkiella parvula HOM05D000327 ORTHO05D000218 1.0e-10 72.4 137 27.7
Hund18646 Selenicereus undatus HOM05D000327 ORTHO05D000218 1.3e-10 72.0 138 30.4
CARHR089180 Cardamine hirsuta HOM05D000327 ORTHO05D000218 3.0e-10 70.9 134 29.1
TAR629G0481 Trochodendron aralioides HOM05D005025 ORTHO05D037041 3.9e-10 70.5 63 52.4
arahy.Tifrunner.gnm1.ann1.Y4HIMP Arachis hypogaea HOM05D000327 ORTHO05D000218 5.1e-10 70.1 121 25.6
Lsat_1_v5_gn_1_38881 Lactuca sativa HOM05D000327 ORTHO05D000218 6.6e-10 69.7 115 29.6
Migut.F01617 Erythranthe guttata HOM05D000554 ORTHO05D000860 1.5e-09 68.6 143 29.4
Migut.F01633 Erythranthe guttata HOM05D000554 ORTHO05D000860 1.5e-09 68.6 143 29.4
Sed0015139 Sechium edule HOM05D000327 ORTHO05D000218 4.8e-08 63.5 146 26.0
Os04g0593600 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D006499 6.2e-08 63.2 45 60.0
Aqoxy5G02273 Aquilegia oxysepala HOM05D000554 ORTHO05D000860 1.4e-07 62.0 136 25.0
CAN.G837.29 Capsicum annuum HOM05D000327 ORTHO05D000218 3.1e-07 60.8 134 28.4
Peaxi162Scf00274g00446 Petunia axillaris HOM05D000327 ORTHO05D000218 3.1e-07 60.8 134 28.4
A05p35110 Brassica napus HOM05D000327 ORTHO05D000218 9.0e-07 59.3 92 31.5
MD09G1173800 Malus domestica HOM05D000327 ORTHO05D000218 2.0e-06 58.2 120 28.3
Rhsim04G0115400 Rhododendron simsii HOM05D000327 ORTHO05D000218 2.0e-06 58.2 134 26.9
arahy.Tifrunner.gnm1.ann1.C70R4U Arachis hypogaea HOM05D000327 ORTHO05D000218 2.6e-06 57.8 107 25.2
Rhsim04G0115600 Rhododendron simsii HOM05D000327 ORTHO05D000218 4.5e-06 57.0 145 25.5
Os04g0593800 Oryza sativa ssp. japonica HOM05D005025 ORTHO05D037041 5.8e-06 56.6 70 38.6


User provided reference genes

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