Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 3.0e-26 120.9 55 100.0
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 4.9e-21 103.6 46 97.8
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 4.9e-21 103.6 46 97.8
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 4.9e-21 103.6 46 97.8
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 4.9e-21 103.6 46 97.8
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 4.9e-21 103.6 46 97.8
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 4.9e-21 103.6 46 97.8
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 4.9e-21 103.6 46 97.8
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 4.9e-21 103.6 46 97.8
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 4.9e-21 103.6 46 97.8
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 4.9e-21 103.6 50 90.0
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 6.5e-21 103.2 46 95.7
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 1.1e-20 102.4 47 93.6
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 1.1e-20 102.4 46 95.7
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 1.1e-20 102.4 46 95.7
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 1.9e-20 101.7 46 95.7
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.9e-20 101.7 46 95.7
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.9e-20 101.7 46 95.7
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.9e-20 101.7 46 95.7
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.9e-20 101.7 46 95.7
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 1.9e-20 101.7 46 95.7
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 1.9e-20 101.7 44 100.0
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.9e-20 101.7 46 95.7
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 3.2e-20 100.9 46 95.7
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.2e-20 100.9 52 84.6
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.2e-20 100.9 52 84.6
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 3.2e-20 100.9 47 93.6
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 4.2e-20 100.5 46 95.7
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 4.2e-20 100.5 46 95.7
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 4.2e-20 100.5 46 95.7
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 4.2e-20 100.5 46 91.3
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 7.1e-20 99.8 44 97.7
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 7.1e-20 99.8 44 97.7
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 7.1e-20 99.8 44 97.7
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 7.1e-20 99.8 44 97.7
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 9.3e-20 99.4 46 91.3
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 9.3e-20 99.4 46 91.3
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 9.3e-20 99.4 46 91.3
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 9.3e-20 99.4 46 93.5
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 1.2e-19 99.0 48 91.7
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 1.2e-19 99.0 47 89.4
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 1.6e-19 98.6 46 93.5
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 1.6e-19 98.6 46 91.3
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 2.1e-19 98.2 46 93.5
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 2.1e-19 98.2 48 89.6
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 2.7e-19 97.8 44 95.5
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 3.5e-19 97.4 46 93.5
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 3.5e-19 97.4 46 91.3
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 4.6e-19 97.1 44 95.5
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 4.6e-19 97.1 46 91.3
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 4.6e-19 97.1 46 91.3
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 4.6e-19 97.1 46 89.1
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 4.6e-19 97.1 46 91.3
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 4.6e-19 97.1 46 91.3
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 4.6e-19 97.1 46 91.3
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 4.6e-19 97.1 46 91.3
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 4.6e-19 97.1 46 91.3
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 4.6e-19 97.1 52 82.7
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 4.6e-19 97.1 46 91.3
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 7.9e-19 96.3 52 80.8
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 7.9e-19 96.3 46 93.5
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 7.9e-19 96.3 46 91.3
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 7.9e-19 96.3 46 91.3
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.0e-18 95.9 45 93.3
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.0e-18 95.9 47 91.5
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 1.0e-18 95.9 46 89.1
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 1.3e-18 95.5 44 93.2
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.8e-18 95.1 44 93.2
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 1.8e-18 95.1 46 87.0
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 1.8e-18 95.1 44 93.2
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 1.8e-18 95.1 44 93.2
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 1.8e-18 95.1 46 91.3
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 2.3e-18 94.7 46 87.0
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 2.3e-18 94.7 46 84.8
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 2.3e-18 94.7 46 87.0
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 2.3e-18 94.7 46 89.1
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 2.3e-18 94.7 46 89.1
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 2.3e-18 94.7 47 91.5
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 2.3e-18 94.7 47 91.5
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 3.0e-18 94.4 44 88.6
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 3.0e-18 94.4 46 87.0
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 3.0e-18 94.4 46 87.0
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 3.9e-18 94.0 47 87.2
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 3.9e-18 94.0 46 87.0
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 3.9e-18 94.0 46 87.0
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 3.9e-18 94.0 46 87.0
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 3.9e-18 94.0 46 87.0
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 3.9e-18 94.0 46 87.0
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 3.9e-18 94.0 46 87.0
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 3.9e-18 94.0 46 87.0
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 3.9e-18 94.0 46 87.0
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 3.9e-18 94.0 47 91.5
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 3.9e-18 94.0 44 93.2
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 3.9e-18 94.0 46 87.0
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 3.9e-18 94.0 46 87.0
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 3.9e-18 94.0 47 91.5
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 5.1e-18 93.6 46 87.0
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 5.1e-18 93.6 46 87.0
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 6.7e-18 93.2 44 88.6
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 6.7e-18 93.2 46 89.1
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 6.7e-18 93.2 46 89.1
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 8.7e-18 92.8 46 84.8
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 8.7e-18 92.8 51 82.4
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 8.7e-18 92.8 47 89.4
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 8.7e-18 92.8 46 89.1
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.1e-17 92.4 46 91.3
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 1.5e-17 92.0 44 88.6
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 1.5e-17 92.0 44 88.6
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 1.5e-17 92.0 44 88.6
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 1.5e-17 92.0 44 88.6
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.5e-17 92.0 45 93.3
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.5e-17 92.0 40 97.5
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 1.9e-17 91.7 44 86.4
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.9e-17 91.7 46 89.1
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 2.5e-17 91.3 41 95.1
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 3.3e-17 90.9 52 76.9
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 4.3e-17 90.5 46 84.8
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 4.3e-17 90.5 45 86.7
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 9.6e-17 89.4 49 77.6
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 9.6e-17 89.4 42 88.1
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 2.1e-16 88.2 48 85.4
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.1e-16 88.2 51 80.4
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.1e-16 88.2 51 80.4
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 1.1e-15 85.9 44 81.8
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 1.8e-15 85.1 48 83.3
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 2.4e-15 84.7 51 74.5
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 3.1e-15 84.3 45 82.2
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 4.0e-15 84.0 44 84.1
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 5.3e-15 83.6 72 58.3
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 5.3e-15 83.6 42 88.1
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.5e-14 82.0 42 81.0
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 3.4e-14 80.9 46 67.4
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 3.4e-14 80.9 46 67.4
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 4.5e-14 80.5 44 81.8
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 4.5e-14 80.5 44 81.8
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 1.3e-13 79.0 46 69.6
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.2e-13 78.2 46 65.2
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 2.5e-12 74.7 42 73.8
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 7.1e-12 73.2 34 91.2
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 9.3e-12 72.8 39 76.9
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 9.3e-12 72.8 47 70.2
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 9.3e-12 72.8 37 81.1
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 9.3e-12 72.8 55 63.6
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 3.5e-11 70.9 44 70.5
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 1.8e-10 68.6 41 73.2
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 5.1e-10 67.0 32 84.4
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 8.7e-10 66.2 78 46.2
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 1.5e-09 65.5 42 66.7
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 3.3e-09 64.3 33 75.8
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 9.7e-09 62.8 31 87.1
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 9.7e-09 62.8 31 87.1
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 9.7e-09 62.8 52 51.9
arahy.Tifrunner.gnm1.ann1.VGS9ID Arachis hypogaea HOM05D004494 ORTHO05D005493 1.4e-07 58.9 37 64.9
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 1.8e-07 58.5 77 45.5
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 3.1e-07 57.8 51 49.0
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 3.1e-07 57.8 51 49.0
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 5.3e-07 57.0 51 49.0
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.2e-06 55.8 49 49.0
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.2e-06 55.8 43 53.5
arahy.Tifrunner.gnm1.ann1.H77AQF Arachis hypogaea HOM05D004494 ORTHO05D005493 3.4e-06 54.3 25 92.0


User provided reference genes

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