Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 9.5e-98 360.1 179 100.0
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 2.4e-69 265.8 179 74.9
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 1.1e-66 256.9 169 72.2
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 2.1e-65 252.7 168 72.0
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 2.4e-64 249.2 168 72.6
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 3.1e-64 248.8 181 70.2
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 2.7e-60 235.7 164 70.1
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 2.7e-60 235.7 169 66.9
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 3.5e-60 235.3 158 71.5
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 1.3e-57 226.9 147 79.6
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 4.5e-55 218.4 161 65.8
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 5.8e-55 218.0 172 61.0
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 2.9e-54 215.7 157 68.8
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 6.5e-54 214.5 159 66.7
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.4e-53 213.4 162 66.0
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 4.2e-53 211.8 160 66.2
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 9.3e-53 210.7 158 62.0
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 1.2e-52 210.3 161 64.0
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 1.6e-52 209.9 157 64.3
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 2.1e-52 209.5 158 61.4
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 2.1e-52 209.5 158 62.0
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 2.7e-52 209.1 157 65.0
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 1.8e-51 206.5 162 64.8
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 2.3e-51 206.1 158 63.9
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 2.3e-51 206.1 162 64.8
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 3.0e-51 205.7 159 62.3
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 3.9e-51 205.3 163 60.7
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 6.7e-51 204.5 162 63.6
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 8.7e-51 204.1 164 61.0
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 8.7e-51 204.1 157 63.7
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 8.7e-51 204.1 162 61.1
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 8.7e-51 204.1 168 58.9
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 1.1e-50 203.8 157 62.4
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 1.9e-50 203.0 160 64.4
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 3.3e-50 202.2 159 59.1
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 4.3e-50 201.8 158 59.5
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 4.3e-50 201.8 165 60.6
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 1.3e-49 200.3 156 66.0
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.6e-49 199.9 155 61.3
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 3.7e-49 198.7 157 61.1
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 3.7e-49 198.7 161 65.2
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.7e-49 198.7 155 61.3
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 4.8e-49 198.4 162 58.6
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 4.8e-49 198.4 158 58.2
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 8.2e-49 197.6 152 61.8
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.1e-48 197.2 156 60.3
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 1.4e-48 196.8 160 63.1
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 1.8e-48 196.4 155 63.2
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 2.4e-48 196.1 158 60.1
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 2.4e-48 196.1 161 58.4
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 3.1e-48 195.7 156 60.3
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 5.3e-48 194.9 154 63.0
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 6.9e-48 194.5 157 61.1
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 9.0e-48 194.1 155 58.7
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 9.0e-48 194.1 155 63.9
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 2.6e-47 192.6 155 58.7
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 5.9e-47 191.4 155 60.0
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 1.0e-46 190.7 170 53.5
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 2.2e-46 189.5 160 60.6
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 3.8e-46 188.7 157 59.2
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.4e-45 186.8 149 61.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.5e-45 186.0 156 58.3
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 3.2e-45 185.7 161 52.2
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 9.4e-45 184.1 163 56.4
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 1.6e-44 183.3 167 50.3
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 2.7e-44 182.6 165 53.9
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 1.8e-43 179.9 169 52.7
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 3.0e-43 179.1 162 53.7
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 1.1e-42 177.2 170 49.4
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 5.7e-42 174.9 152 55.9
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 2.2e-41 172.9 150 58.0
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 2.8e-41 172.6 160 52.5
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 2.8e-41 172.6 151 55.0
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 4.8e-41 171.8 158 55.1
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 1.4e-40 170.2 152 55.3
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 1.8e-40 169.9 143 57.3
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 3.1e-40 169.1 157 54.8
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 9.1e-40 167.5 159 52.8
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 1.5e-39 166.8 162 52.5
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 2.2e-38 162.9 158 50.0
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 5.0e-38 161.8 160 50.0
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.9e-37 159.8 151 51.7
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 9.4e-37 157.5 156 48.7
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 1.2e-36 157.1 157 48.4
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 4.7e-36 155.2 157 47.8
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 4.7e-36 155.2 157 47.8
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 4.7e-36 155.2 125 58.4
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 6.1e-36 154.8 154 47.4
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 1.0e-35 154.1 157 47.8
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 3.0e-35 152.5 157 47.8
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 3.0e-35 152.5 157 47.8
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 6.7e-35 151.4 158 47.5
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 8.8e-35 151.0 153 47.7
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 1.1e-34 150.6 156 47.4
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 2.0e-34 149.8 161 51.6
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 3.3e-34 149.1 161 48.4
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 2.8e-33 146.0 159 49.7
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 1.1e-32 144.1 157 45.9
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 1.8e-32 143.3 159 46.5
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 4.1e-32 142.1 158 45.6
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 4.1e-32 142.1 124 63.7
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.5e-31 140.2 155 46.5
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 4.5e-31 138.7 164 45.7
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 4.5e-31 138.7 164 45.7
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 2.2e-30 136.3 164 44.5
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 2.9e-30 136.0 160 47.5
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 2.9e-30 136.0 169 40.8
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 3.8e-30 135.6 155 51.0
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 8.5e-30 134.4 154 43.5
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 5.3e-24 115.2 160 42.5
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 1.1e-21 107.5 155 36.1
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 2.9e-14 82.8 57 61.4
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 2.7e-12 76.3 139 34.5
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 8.8e-11 71.2 116 31.9
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 7.5e-10 68.2 65 56.9
C04p54120 Brassica napus HOM05D002728 ORTHO05D002874 2.7e-07 59.7 170 28.2
CAN.G308.33 Capsicum annuum HOM05D002728 ORTHO05D002874 2.7e-07 59.7 163 28.2
BcaB04g21396 Brassica carinata HOM05D002728 ORTHO05D002874 4.5e-07 58.9 149 25.5
BolC4t26964H Brassica oleracea HOM05D002728 ORTHO05D002874 4.5e-07 58.9 162 28.4
BcaB06g27981 Brassica carinata HOM05D002728 ORTHO05D002874 5.9e-07 58.5 170 27.6
Sp4g03490 Schrenkiella parvula HOM05D002728 ORTHO05D002874 5.9e-07 58.5 137 30.7
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 5.9e-07 58.5 112 37.5
AL4G14970 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 1.0e-06 57.8 127 31.5
BcaC02g08447 Brassica carinata HOM05D002728 ORTHO05D002874 1.3e-06 57.4 141 29.1
BraA04t17490Z Brassica rapa HOM05D002728 ORTHO05D002874 1.3e-06 57.4 141 29.1
TAR626G0658 Trochodendron aralioides HOM05D002728 ORTHO05D002874 1.3e-06 57.4 149 27.5
BcaNung03547 Brassica carinata HOM05D002728 ORTHO05D002874 1.7e-06 57.0 149 24.8
BNapus_Darmor_BZH_scaffold_129p00170 Brassica napus HOM05D002728 ORTHO05D002874 1.7e-06 57.0 149 24.8
BolC1t05863H Brassica oleracea HOM05D002728 ORTHO05D002874 1.7e-06 57.0 149 24.8
BraA01t04606Z Brassica rapa HOM05D002728 ORTHO05D002874 1.7e-06 57.0 149 24.8
AT2G24490 Arabidopsis thaliana HOM05D002728 ORTHO05D002874 2.3e-06 56.6 127 30.7
A04p18810 Brassica napus HOM05D002728 ORTHO05D002874 2.3e-06 56.6 149 28.2
Thhalv10000282m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 2.9e-06 56.2 137 30.7
MSTRG.6224 Avicennia marina HOM05D002728 ORTHO05D002874 5.0e-06 55.5 149 29.5
Carub.0004s0383 Capsella rubella HOM05D002728 ORTHO05D002874 5.0e-06 55.5 116 31.9
CARHR076950 Cardamine hirsuta HOM05D002728 ORTHO05D002874 5.0e-06 55.5 155 23.9
Migut.J01489 Erythranthe guttata HOM05D002728 ORTHO05D002874 5.0e-06 55.5 144 28.5
Actinidia17316 Actinidia chinensis HOM05D002728 ORTHO05D002874 6.6e-06 55.1 128 30.5
DCAR_000664 Daucus carota HOM05D002728 ORTHO05D002874 6.6e-06 55.1 127 28.3


User provided reference genes

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