Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 1.9e-77 292.4 141 100.0
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 4.6e-23 111.7 56 94.6
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 6.1e-23 111.3 56 92.9
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 5.7e-21 104.8 56 89.3
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 9.7e-21 104.0 56 87.5
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 1.3e-20 103.6 56 85.7
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 2.8e-20 102.4 56 85.7
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 2.8e-20 102.4 56 85.7
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 2.8e-20 102.4 56 87.5
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 4.8e-20 101.7 56 83.9
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 8.2e-20 100.9 56 85.7
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 8.2e-20 100.9 56 85.7
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 9.1e-19 97.4 56 80.4
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 2.0e-18 96.3 56 82.1
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 1.0e-17 94.0 54 79.6
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 1.3e-17 93.6 56 75.0
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 2.2e-17 92.8 54 79.6
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.9e-16 89.7 56 69.6
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 2.5e-16 89.4 56 69.6
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 3.2e-16 89.0 58 67.2
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 7.2e-16 87.8 56 67.9
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 7.2e-16 87.8 56 71.4
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 1.2e-15 87.0 56 71.4
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 1.2e-15 87.0 56 67.9
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.6e-15 86.7 56 69.6
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.6e-15 86.7 56 69.6
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 1.6e-15 86.7 56 69.6
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.6e-15 86.7 56 64.3
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 2.1e-15 86.3 56 67.9
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 2.1e-15 86.3 56 69.6
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 2.7e-15 85.9 72 58.3
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 2.7e-15 85.9 72 58.3
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 2.7e-15 85.9 56 71.4
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 2.7e-15 85.9 56 67.9
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 3.6e-15 85.5 56 69.6
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 3.6e-15 85.5 56 66.1
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 3.6e-15 85.5 56 66.1
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 3.6e-15 85.5 56 67.9
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 4.7e-15 85.1 56 67.9
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 4.7e-15 85.1 56 67.9
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 4.7e-15 85.1 55 69.1
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 4.7e-15 85.1 56 66.1
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 4.7e-15 85.1 56 66.1
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 7.9e-15 84.3 56 69.6
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 7.9e-15 84.3 56 64.3
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 7.9e-15 84.3 56 66.1
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 7.9e-15 84.3 56 67.9
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.0e-14 84.0 56 66.1
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.0e-14 84.0 56 67.9
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 1.4e-14 83.6 56 64.3
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.4e-14 83.6 56 67.9
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.4e-14 83.6 56 67.9
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.4e-14 83.6 56 67.9
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 1.4e-14 83.6 56 69.6
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.4e-14 83.6 56 66.1
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.4e-14 83.6 56 66.1
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 1.4e-14 83.6 56 66.1
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 1.8e-14 83.2 56 64.3
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 2.3e-14 82.8 56 64.3
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 2.3e-14 82.8 76 56.6
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 3.0e-14 82.4 56 66.1
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 3.0e-14 82.4 56 66.1
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 3.0e-14 82.4 56 66.1
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 3.0e-14 82.4 56 66.1
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 3.0e-14 82.4 56 64.3
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 3.0e-14 82.4 56 66.1
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 3.9e-14 82.0 57 64.9
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 3.9e-14 82.0 56 66.1
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 3.9e-14 82.0 56 64.3
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 5.2e-14 81.6 57 64.9
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 5.2e-14 81.6 56 64.3
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 5.2e-14 81.6 56 64.3
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 6.7e-14 81.3 56 60.7
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 8.8e-14 80.9 56 60.7
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 8.8e-14 80.9 57 64.9
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 8.8e-14 80.9 58 65.5
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 8.8e-14 80.9 57 64.9
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 8.8e-14 80.9 56 62.5
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 1.1e-13 80.5 58 65.5
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 1.5e-13 80.1 56 58.9
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.5e-13 80.1 56 66.1
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 1.5e-13 80.1 56 62.5
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 1.5e-13 80.1 56 58.9
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 2.6e-13 79.3 56 58.9
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 2.6e-13 79.3 56 58.9
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 2.6e-13 79.3 57 63.2
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 2.6e-13 79.3 57 63.2
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 2.6e-13 79.3 56 58.9
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 4.4e-13 78.6 56 64.3
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 5.7e-13 78.2 56 58.9
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 5.7e-13 78.2 56 58.9
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 5.7e-13 78.2 56 58.9
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 5.7e-13 78.2 56 58.9
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 5.7e-13 78.2 56 58.9
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 5.7e-13 78.2 59 64.4
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 7.4e-13 77.8 56 60.7
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 9.7e-13 77.4 56 58.9
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 1.3e-12 77.0 56 62.5
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 1.3e-12 77.0 56 58.9
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.3e-12 77.0 56 64.3
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 1.3e-12 77.0 56 60.7
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.7e-12 76.6 56 60.7
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.7e-12 76.6 56 62.5
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-12 76.6 56 62.5
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-12 76.6 56 58.9
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 1.7e-12 76.6 56 58.9
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 2.2e-12 76.3 56 60.7
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 2.8e-12 75.9 52 75.0
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 2.8e-12 75.9 56 58.9
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 3.7e-12 75.5 56 57.1
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 3.7e-12 75.5 56 62.5
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 4.8e-12 75.1 56 60.7
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.8e-12 75.1 56 60.7
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.8e-12 75.1 56 60.7
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.8e-12 75.1 56 60.7
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 6.3e-12 74.7 68 60.3
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 8.2e-12 74.3 56 57.1
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 8.2e-12 74.3 56 58.9
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 8.2e-12 74.3 56 58.9
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 8.2e-12 74.3 71 52.1
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 8.2e-12 74.3 54 64.8
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.4e-11 73.6 56 55.4
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.8e-11 73.2 56 58.9
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.8e-11 73.2 56 58.9
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 1.8e-11 73.2 56 57.1
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 1.8e-11 73.2 55 60.0
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 3.1e-11 72.4 56 57.1
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.1e-11 72.4 76 48.7
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 7.0e-11 71.2 56 55.4
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 7.0e-11 71.2 56 60.7
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 2.6e-10 69.3 59 59.3
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 4.5e-10 68.6 62 61.3
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 2.9e-09 65.9 54 53.7
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 3.8e-09 65.5 56 55.4
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.8e-09 65.5 59 54.2
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 6.5e-09 64.7 56 57.1
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.9e-08 63.2 56 57.1
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.5e-08 62.8 56 53.6
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 6.7e-06 54.7 54 48.1
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 6.7e-06 54.7 56 46.4


User provided reference genes

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