Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P861T17 Lonicera japonica HOM05D003093 ORTHO05D019262 4.9e-76 287.7 145 100.0
Lj2A842G6 Lonicera japonica HOM05D003093 ORTHO05D019262 1.5e-64 249.6 144 86.1
Lj2P843T9 Lonicera japonica HOM05D003093 ORTHO05D019262 3.3e-64 248.4 144 87.5
Lj2A860T8 Lonicera japonica HOM05D003093 ORTHO05D019262 7.3e-64 247.3 144 86.8
Lj2P860T6 Lonicera japonica HOM05D003093 ORTHO05D019262 6.8e-62 240.7 141 85.8
Lj2P868T23 Lonicera japonica HOM05D003093 ORTHO05D019262 3.7e-60 235.0 141 84.4
Lj2A862T14 Lonicera japonica HOM05D003093 ORTHO05D019262 2.5e-11 72.8 79 50.6
Lj2A846T19 Lonicera japonica HOM05D003093 ORTHO05D019262 5.5e-11 71.6 83 49.4
Lj2C863G7 Lonicera japonica HOM05D003093 ORTHO05D004301 1.0e-09 67.4 76 53.9
Ah.10g033320 Amaranthus hybridus HOM05D003093 ORTHO05D004301 8.8e-09 64.3 120 40.0
Eucgr.G02772 Eucalyptus grandis HOM05D003093 ORTHO05D004301 8.8e-09 64.3 99 41.4
Peaxi162Scf00015g02612 Petunia axillaris HOM05D003093 ORTHO05D004301 8.8e-09 64.3 101 45.5
CiPaw.01G280100 Carya illinoinensis HOM05D003093 ORTHO05D004301 1.1e-08 63.9 99 44.4
Hund22428 Selenicereus undatus HOM05D003093 ORTHO05D004301 1.1e-08 63.9 120 39.2
CAN.G546.16 Capsicum annuum HOM05D003093 ORTHO05D004301 1.5e-08 63.5 120 40.8
Dinv31391 Davidia involucrata HOM05D003093 ORTHO05D004301 1.5e-08 63.5 120 39.2
Mapoly0014s0207 Marchantia polymorpha HOM05D003093 ORTHO05D004301 1.5e-08 63.5 101 45.5
CDE10G0582 Ceratophyllum demersum HOM05D003093 ORTHO05D004301 2.0e-08 63.2 99 42.4
ATR0580G275 Amborella trichopoda HOM05D003093 ORTHO05D004301 2.5e-08 62.8 120 36.7
PGR142G0268 Punica granatum HOM05D003093 ORTHO05D004301 2.5e-08 62.8 99 39.4
Sopen05g033340 Solanum pennellii HOM05D003093 ORTHO05D004301 2.5e-08 62.8 99 41.4
Gohir.D10G218100 Gossypium hirsutum HOM05D003093 ORTHO05D004301 3.3e-08 62.4 118 38.1
Gorai.011G244700 Gossypium raimondii HOM05D003093 ORTHO05D004301 3.3e-08 62.4 118 38.1
Lj1A929G70 Lonicera japonica HOM05D003093 ORTHO05D004301 3.3e-08 62.4 120 39.2
Manes.07G106800 Manihot esculenta HOM05D003093 ORTHO05D004301 3.3e-08 62.4 97 40.2
PGSC0003DMG400023507 Solanum tuberosum HOM05D003093 ORTHO05D004301 3.3e-08 62.4 99 42.4
Thecc.10G062100 Theobroma cacao HOM05D003093 ORTHO05D004301 3.3e-08 62.4 98 40.8
GSVIVG01032624001 Vitis vinifera HOM05D003093 ORTHO05D004301 3.3e-08 62.4 120 40.0
Duzib114G0430 Durio zibethinus HOM05D003093 ORTHO05D004301 4.3e-08 62.0 118 38.1
Duzib114G0987 Durio zibethinus HOM05D003093 ORTHO05D004301 4.3e-08 62.0 118 38.1
Gorai.010G203000 Gossypium raimondii HOM05D003093 ORTHO05D004301 4.3e-08 62.0 118 38.1
Sabra10G0165100 Salix brachista HOM05D003093 ORTHO05D004301 4.3e-08 62.0 117 36.8
THA.LOC104827309 Tarenaya hassleriana HOM05D003093 ORTHO05D004301 4.3e-08 62.0 117 37.6
EL10Ac2g03490 Beta vulgaris HOM05D003093 ORTHO05D004301 5.7e-08 61.6 120 39.2
CiPaw.02G178700 Carya illinoinensis HOM05D003093 ORTHO05D004301 5.7e-08 61.6 101 43.6
FAN03G1537 Fragaria x ananassa HOM05D003093 ORTHO05D004301 5.7e-08 61.6 97 39.2
Gohir.A06G177800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 5.7e-08 61.6 118 38.1
Gohir.D06G173600 Gossypium hirsutum HOM05D003093 ORTHO05D004301 5.7e-08 61.6 118 37.3
Lalb_Chr02g0143891 Lupinus albus HOM05D003093 ORTHO05D004301 5.7e-08 61.6 98 41.8
PSO541G5925 Papaver somniferum HOM05D003093 ORTHO05D004301 5.7e-08 61.6 118 37.3
PSO675G6375 Papaver somniferum HOM05D003093 ORTHO05D004301 5.7e-08 61.6 118 37.3
Sc06g0001860 Simmondsia chinensis HOM05D003093 ORTHO05D004301 5.7e-08 61.6 120 37.5
Solyc05g054880.3 Solanum lycopersicum HOM05D003093 ORTHO05D004301 5.7e-08 61.6 99 41.4
Solyc06g036580.4 Solanum lycopersicum HOM05D003093 ORTHO05D004301 5.7e-08 61.6 120 40.0
TAR320G0003 Trochodendron aralioides HOM05D003093 ORTHO05D004301 5.7e-08 61.6 99 42.4
Atru.chr12.590 Acer truncatum HOM05D003093 ORTHO05D004301 7.4e-08 61.2 101 41.6
arahy.Tifrunner.gnm1.ann1.59ZZV8 Arachis hypogaea HOM05D003093 ORTHO05D004301 7.4e-08 61.2 98 40.8
Potri.010G213300 Populus trichocarpa HOM05D003093 ORTHO05D004301 7.4e-08 61.2 117 36.8
TAR623G1133 Trochodendron aralioides HOM05D003093 ORTHO05D004301 7.4e-08 61.2 120 39.2
Duzib128G1511 Durio zibethinus HOM05D003093 ORTHO05D004301 9.7e-08 60.8 118 37.3
Glyma.20G241900 Glycine max HOM05D003093 ORTHO05D004301 9.7e-08 60.8 100 41.0
HanXRQChr16g0532861 Helianthus annuus HOM05D003093 ORTHO05D004301 9.7e-08 60.8 120 39.2
SalBow3G0936 Salvia bowleyana HOM05D003093 ORTHO05D004301 9.7e-08 60.8 120 35.8
Sp1g24240 Schrenkiella parvula HOM05D003093 ORTHO05D004301 9.7e-08 60.8 117 37.6
Gohir.A10G209800 Gossypium hirsutum HOM05D003093 ORTHO05D004301 1.3e-07 60.5 118 37.3
Lj5g0014436 Lotus japonicus HOM05D003093 ORTHO05D004301 1.3e-07 60.5 100 40.0
Manes.10G038800 Manihot esculenta HOM05D003093 ORTHO05D004301 1.3e-07 60.5 97 40.2
HPP92_019592 Vanilla planifolia HOM05D003093 ORTHO05D004301 1.3e-07 60.5 97 44.3
arahy.Tifrunner.gnm1.ann1.YKFK84 Arachis hypogaea HOM05D003093 ORTHO05D004301 1.7e-07 60.1 98 40.8
CBR_g41418 Chara braunii HOM05D003093 ORTHO05D004301 1.7e-07 60.1 99 41.4
Ciclev10030694m.g Citrus clementina HOM05D003093 ORTHO05D004301 1.7e-07 60.1 97 40.2
ECA233G1939 Erigeron canadensis HOM05D003093 ORTHO05D004301 1.7e-07 60.1 120 39.2
Lalb_Chr21g0307191 Lupinus albus HOM05D003093 ORTHO05D004301 1.7e-07 60.1 98 41.8
Oeu039037.3 Olea europaea HOM05D003093 ORTHO05D004301 1.7e-07 60.1 120 36.7
Sopen06g008290 Solanum pennellii HOM05D003093 ORTHO05D004301 1.7e-07 60.1 120 39.2
Aa31sc146G40 Aethionema arabicum HOM05D003093 ORTHO05D004301 2.2e-07 59.7 117 36.8
BcaC05g26809 Brassica carinata HOM05D003093 ORTHO05D004301 2.2e-07 59.7 117 36.8
CANSAT78G1625 Cannabis sativa HOM05D003093 ORTHO05D004301 2.2e-07 59.7 97 41.2
ECA234G2610 Erigeron canadensis HOM05D003093 ORTHO05D004301 2.2e-07 59.7 99 40.4
Lsat_1_v5_gn_3_65860 Lactuca sativa HOM05D003093 ORTHO05D004301 2.2e-07 59.7 120 38.3
Nn2g10548 Nelumbo nucifera HOM05D003093 ORTHO05D004301 2.2e-07 59.7 120 38.3
Oeu009485.1 Olea europaea HOM05D003093 ORTHO05D004301 2.2e-07 59.7 120 36.7
Actinidia02998 Actinidia chinensis HOM05D003093 ORTHO05D004301 2.8e-07 59.3 120 36.7
Thhalv10006834m.g Eutrema salsugineum HOM05D003093 ORTHO05D004301 2.8e-07 59.3 117 36.8
Glyma.01G229700 Glycine max HOM05D003093 ORTHO05D004301 2.8e-07 59.3 120 37.5
Glyma.11G012500 Glycine max HOM05D003093 ORTHO05D004301 2.8e-07 59.3 120 37.5
Actinidia38222 Actinidia chinensis HOM05D003093 ORTHO05D004301 3.7e-07 58.9 120 37.5
SalBow8G1202 Salvia bowleyana HOM05D003093 ORTHO05D004301 3.7e-07 58.9 120 35.0
PGSC0003DMG400002376 Solanum tuberosum HOM05D003093 ORTHO05D004301 3.7e-07 58.9 120 39.2
unitig_32.g10676 Utricularia gibba HOM05D003093 ORTHO05D004301 3.7e-07 58.9 120 35.0
VMungo0720G2412 Vigna mungo HOM05D003093 ORTHO05D004301 3.7e-07 58.9 100 39.0
AL1G41570 Arabidopsis lyrata HOM05D003093 ORTHO05D004301 4.8e-07 58.5 117 36.8
Carub.0001s2649 Capsella rubella HOM05D003093 ORTHO05D004301 4.8e-07 58.5 117 36.8
FvH4_7g20820 Fragaria vesca HOM05D003093 ORTHO05D004301 4.8e-07 58.5 97 38.1
FAN01G1069 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.8e-07 58.5 97 38.1
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.8e-07 58.5 97 38.1
FAN01G1323 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.8e-07 58.5 97 38.1
FAN06G1239 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.8e-07 58.5 97 38.1
FAN06G3924 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.8e-07 58.5 97 38.1
FAN10G3079 Fragaria x ananassa HOM05D003093 ORTHO05D004301 4.8e-07 58.5 97 38.1
Medtr1g115920 Medicago truncatula HOM05D003093 ORTHO05D004301 4.8e-07 58.5 100 39.0
Phvul.007G008300 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 4.8e-07 58.5 100 40.0
Potri.008G048000 Populus trichocarpa HOM05D003093 ORTHO05D004301 4.8e-07 58.5 97 38.1
AagrBONN_evm.TU.Sc2ySwM_117.140 Anthoceros agrestis HOM05D003093 ORTHO05D004301 6.3e-07 58.2 101 42.6
CSS0040311 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 6.3e-07 58.2 120 38.3
CSS0050146 Camellia sinensis var. sinensis HOM05D003093 ORTHO05D004301 6.3e-07 58.2 120 38.3
CARHR027510 Cardamine hirsuta HOM05D003093 ORTHO05D004301 6.3e-07 58.2 117 34.2
Phvul.002G037600 Phaseolus vulgaris HOM05D003093 ORTHO05D004301 6.3e-07 58.2 100 41.0
RcHm_v2.0_Chr1g0365041 Rosa chinensis HOM05D003093 ORTHO05D004301 6.3e-07 58.2 97 37.1
Ca_11321_v3 Cicer arietinum L. HOM05D003093 ORTHO05D004301 8.2e-07 57.8 100 39.0
HanXRQChr15g0482981 Helianthus annuus HOM05D003093 ORTHO05D004301 8.2e-07 57.8 118 38.1
MBI05_g32633_MAGBIO Magnolia biondii HOM05D003093 ORTHO05D004301 8.2e-07 57.8 120 39.2
Psat6g240760 Pisum sativum HOM05D003093 ORTHO05D004301 8.2e-07 57.8 98 39.8
Aqoxy1G01978 Aquilegia oxysepala HOM05D003093 ORTHO05D004301 1.1e-06 57.4 122 38.5
CAN.G97.8 Capsicum annuum HOM05D003093 ORTHO05D018860 1.1e-06 57.4 100 39.0
Migut.F00813 Erythranthe guttata HOM05D003093 ORTHO05D004301 1.1e-06 57.4 120 33.3
Medtr4g094355 Medicago truncatula HOM05D003093 ORTHO05D004301 1.1e-06 57.4 96 40.6
Rhsim03G0125400 Rhododendron simsii HOM05D003093 ORTHO05D004301 1.1e-06 57.4 122 39.3
SHI28152 Sapria himalayana HOM05D003093 ORTHO05D000168 1.1e-06 57.4 119 36.1
MD07G1185000 Malus domestica HOM05D003093 ORTHO05D004301 1.4e-06 57.0 98 38.8
SMO340G0141 Selaginella moellendorffii HOM05D003093 ORTHO05D004301 1.4e-06 57.0 99 37.4
SEGI_10080 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.4e-06 57.0 120 36.7
SEGI_11595 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.4e-06 57.0 120 36.7
SEGI_36215 Sequoiadendron giganteum HOM05D003093 ORTHO05D004301 1.4e-06 57.0 120 36.7
SGA_v2.0_scaffold221G42698 Striga asiatica HOM05D003093 ORTHO05D004301 1.4e-06 57.0 120 36.7
BcaC05g26621 Brassica carinata HOM05D003093 ORTHO05D004301 1.8e-06 56.6 117 35.9
A09p38030 Brassica napus HOM05D003093 ORTHO05D004301 1.8e-06 56.6 117 35.9
C05p26730 Brassica napus HOM05D003093 ORTHO05D004301 1.8e-06 56.6 117 35.9
BolC5t31397H Brassica oleracea HOM05D003093 ORTHO05D004301 1.8e-06 56.6 117 35.9
BraA09t39313Z Brassica rapa HOM05D003093 ORTHO05D004301 1.8e-06 56.6 117 35.9
Prupe.2G224900 Prunus persica HOM05D003093 ORTHO05D004301 1.8e-06 56.6 97 38.1
Cc02_g08600 Coffea canephora HOM05D003093 ORTHO05D004301 3.1e-06 55.8 120 35.0
QL08p057653 Quercus lobata HOM05D003093 ORTHO05D004301 3.1e-06 55.8 99 40.4
Rhsim09G0156000 Rhododendron simsii HOM05D003093 ORTHO05D004301 3.1e-06 55.8 84 39.3
TPR.G11535 Trifolium pratense HOM05D003093 ORTHO05D004301 3.1e-06 55.8 100 39.0
VMungo0720G2126 Vigna mungo HOM05D003093 ORTHO05D004301 3.1e-06 55.8 98 38.8
Sabra08G0034200 Salix brachista HOM05D003093 ORTHO05D004301 4.1e-06 55.5 97 37.1
Sed0012201 Sechium edule HOM05D003093 ORTHO05D004301 4.1e-06 55.5 119 35.3
TPR.G27039 Trifolium pratense HOM05D003093 ORTHO05D004301 4.1e-06 55.5 118 35.6
TWI38G0009 Tripterygium wilfordii HOM05D003093 ORTHO05D004301 4.1e-06 55.5 118 36.4
AT1G28060 Arabidopsis thaliana HOM05D003093 ORTHO05D004301 5.3e-06 55.1 117 35.0
ClCG02G013660 Citrullus lanatus HOM05D003093 ORTHO05D004301 5.3e-06 55.1 119 34.5
MELO3C023809.2 Cucumis melo HOM05D003093 ORTHO05D004301 5.3e-06 55.1 119 34.5
CsaV3_5G006530 Cucumis sativus L. HOM05D003093 ORTHO05D004301 5.3e-06 55.1 119 34.5
MD01G1117500 Malus domestica HOM05D003093 ORTHO05D004301 5.3e-06 55.1 118 35.6
SGA_v2.0_scaffold2G01039 Striga asiatica HOM05D003093 ORTHO05D004301 5.3e-06 55.1 120 35.8
BolC3t19719H Brassica oleracea HOM05D003093 ORTHO05D004301 9.1e-06 54.3 97 35.1
Carub.0005s2292 Capsella rubella HOM05D003093 ORTHO05D004301 9.1e-06 54.3 117 33.3
Os09g0249600 Oryza sativa ssp. japonica HOM05D003093 ORTHO05D004301 9.1e-06 54.3 120 36.7
Sed0009358 Sechium edule HOM05D003093 ORTHO05D004301 9.1e-06 54.3 119 34.5
TPR.G27107 Trifolium pratense HOM05D003093 ORTHO05D004301 9.1e-06 54.3 100 35.0


User provided reference genes

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