Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 2.8e-64 248.4 123 100.0
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 2.8e-64 248.4 123 100.0
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 2.8e-64 248.4 123 100.0
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 2.4e-55 218.8 123 89.4
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-54 216.5 123 88.6
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-54 216.5 123 88.6
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-54 216.5 123 88.6
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-54 216.5 123 88.6
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-54 216.5 123 88.6
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 1.2e-54 216.5 123 88.6
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 2.0e-54 215.7 122 87.7
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 9.9e-54 213.4 121 88.4
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 2.2e-53 212.2 123 87.0
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 6.4e-53 210.7 123 85.4
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 6.4e-53 210.7 123 86.2
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 6.4e-53 210.7 123 86.2
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 6.4e-53 210.7 123 86.2
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 2.4e-52 208.8 123 84.6
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 2.4e-52 208.8 123 83.7
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 5.4e-52 207.6 121 86.0
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 1.6e-51 206.1 123 83.7
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 6.0e-51 204.1 123 82.9
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 6.0e-51 204.1 123 82.9
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 6.0e-51 204.1 123 82.9
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 6.0e-51 204.1 123 82.9
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 6.0e-51 204.1 123 82.9
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 6.0e-51 204.1 123 82.9
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 6.0e-51 204.1 123 82.9
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 6.0e-51 204.1 123 82.9
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 6.0e-51 204.1 123 82.9
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 6.0e-51 204.1 123 82.9
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 6.0e-51 204.1 123 82.9
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 1.0e-50 203.4 123 81.3
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 3.0e-50 201.8 120 83.3
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 3.0e-50 201.8 123 82.1
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 5.1e-50 201.1 120 84.2
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 8.7e-50 200.3 120 82.5
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.1e-49 199.9 123 80.5
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 1.5e-49 199.5 124 82.3
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 1.5e-49 199.5 123 82.1
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 2.5e-49 198.7 120 81.7
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 2.5e-49 198.7 122 80.3
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.6e-49 197.6 123 80.5
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 5.6e-49 197.6 121 81.0
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.3e-49 197.2 123 80.5
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.3e-49 197.2 123 80.5
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 7.3e-49 197.2 123 78.9
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 7.3e-49 197.2 123 78.9
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 7.3e-49 197.2 123 78.9
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 9.6e-49 196.8 123 80.5
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.6e-48 196.1 123 78.9
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 6.2e-48 194.1 123 77.2
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 1.1e-47 193.4 122 79.5
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.4e-47 193.0 120 80.0
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 1.4e-47 193.0 120 80.0
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 1.4e-47 193.0 120 80.0
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.4e-47 193.0 120 80.0
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 1.4e-47 193.0 114 86.0
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 9.0e-47 190.3 109 88.1
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 9.0e-47 190.3 123 79.7
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.0e-46 189.1 123 78.0
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.3e-45 186.4 122 74.6
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 1.7e-45 186.0 123 77.2
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 1.9e-44 182.6 122 72.1
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 9.3e-44 180.3 113 79.6
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 6.0e-43 177.6 123 72.4
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 1.8e-42 176.0 109 81.7
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.0e-42 175.3 118 74.6
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 3.9e-42 174.9 121 75.2
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 3.9e-42 174.9 115 78.3
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.4e-41 170.6 109 78.0
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.6e-40 169.5 110 74.5
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 2.1e-40 169.1 122 67.2
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 2.1e-40 169.1 122 67.2
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.2e-40 167.5 111 73.0
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 8.1e-40 167.2 123 69.9
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 1.8e-39 166.0 105 81.0
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 2.4e-39 165.6 122 64.8
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 2.6e-38 162.2 122 65.6
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 9.9e-38 160.2 106 78.3
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 2.9e-37 158.7 122 63.9
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 3.8e-37 158.3 118 66.1
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 2.4e-36 155.6 94 80.9
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 7.1e-36 154.1 104 73.1
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 4.6e-35 151.4 104 72.1
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 6.0e-35 151.0 96 78.1
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.0e-34 150.2 118 66.1
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.3e-34 149.8 96 78.1
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 1.3e-34 149.8 98 77.6
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 1.8e-34 149.4 110 70.0
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.3e-32 143.3 122 62.3
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 2.8e-32 142.1 85 85.9
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.8e-32 142.1 119 59.7
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 2.8e-32 142.1 119 59.7
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.8e-32 142.1 119 59.7
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 2.8e-32 142.1 119 59.7
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.8e-32 142.1 119 59.7
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.8e-32 142.1 119 59.7
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 3.7e-32 141.7 125 60.8
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 8.2e-32 140.6 85 82.4
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 1.1e-31 140.2 119 58.8
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 1.1e-31 140.2 119 58.8
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.4e-31 139.8 110 65.5
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.4e-31 139.0 119 58.0
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 3.4e-30 135.2 78 83.3
HanXRQChr05g0152541 Helianthus annuus HOM05D002578 ORTHO05D005154 3.4e-30 135.2 75 88.0
HanXRQChr11g0327001 Helianthus annuus HOM05D002578 ORTHO05D005154 3.4e-30 135.2 75 88.0
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 4.5e-30 134.8 110 60.0
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 3.8e-29 131.7 75 85.3
Migut.D01324 Erythranthe guttata HOM05D002578 ORTHO05D005154 4.9e-29 131.3 74 86.5
Nn1g08404 Nelumbo nucifera HOM05D002578 ORTHO05D005154 8.4e-29 130.6 75 84.0
RcHm_v2.0_Chr2g0118541 Rosa chinensis HOM05D002578 ORTHO05D005154 8.4e-29 130.6 75 84.0
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 3.2e-28 128.6 83 77.1
Gohir.D09G093200 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.2e-28 128.3 75 84.0
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 1.8e-26 122.9 101 63.4
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 1.8e-26 122.9 100 61.0
Gohir.A09G103050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 2.3e-26 122.5 73 82.2
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 5.1e-26 121.3 79 78.5
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 8.7e-26 120.6 122 52.5
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 4.3e-25 118.2 83 72.3
Potri.002G235600 Populus trichocarpa HOM05D002578 ORTHO05D005154 4.3e-25 118.2 75 76.0
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 9.7e-25 117.1 101 60.4
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.4e-23 113.2 77 74.0
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 2.0e-22 109.4 80 67.5
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 1.0e-21 107.1 69 79.7
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 6.5e-21 104.4 97 58.8
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 8.5e-21 104.0 80 65.0
Lj2A1234G110 Lonicera japonica HOM05D002578 ORTHO05D005154 1.4e-20 103.2 61 82.0
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 1.6e-19 99.8 76 65.8
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 6.1e-19 97.8 72 72.2
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 1.8e-18 96.3 66 72.7
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 3.0e-18 95.5 73 65.8
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 3.0e-18 95.5 73 65.8
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 3.0e-18 95.5 73 65.8
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 3.0e-18 95.5 73 65.8
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 3.0e-18 95.5 73 65.8
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 3.9e-18 95.1 67 70.1
Psat6g181640 Pisum sativum HOM05D002578 ORTHO05D005154 6.7e-18 94.4 61 75.4
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 1.5e-17 93.2 57 82.5
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 1.9e-17 92.8 64 75.0
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 6.3e-16 87.8 79 54.4
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 1.8e-15 86.3 122 43.4
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 3.1e-15 85.5 80 55.0
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 6.9e-15 84.3 79 55.7
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 6.9e-15 84.3 79 55.7
Hund18006 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.3e-13 80.1 75 60.0
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 6.5e-13 77.8 51 76.5
CiPaw.10G131300 Carya illinoinensis HOM05D002578 ORTHO05D005154 3.2e-12 75.5 109 44.0
Eucgr.A01255 Eucalyptus grandis HOM05D002578 ORTHO05D002698 7.2e-12 74.3 61 60.7
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 1.6e-11 73.2 44 77.3
CANSAT16G0046 Cannabis sativa HOM05D001987 ORTHO05D006514 7.9e-11 70.9 110 32.7
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 1.8e-10 69.7 44 77.3
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 3.0e-10 68.9 38 84.2
Cpa.g.sc301.3 Carica papaya HOM05D002578 ORTHO05D005820 2.6e-09 65.9 42 78.6
Nitab4.5_0005412g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 5.7e-09 64.7 39 79.5
Ah.10g028690 Amaranthus hybridus HOM05D001987 ORTHO05D006514 7.4e-09 64.3 108 32.4
arahy.Tifrunner.gnm1.ann1.8UR9GU Arachis hypogaea HOM05D001987 ORTHO05D006514 1.3e-08 63.5 111 32.4
arahy.Tifrunner.gnm1.ann1.K88Y93 Arachis hypogaea HOM05D001987 ORTHO05D006514 1.3e-08 63.5 111 32.4
arahy.Tifrunner.gnm1.ann1.TY26DT Arachis hypogaea HOM05D001987 ORTHO05D006514 1.3e-08 63.5 111 32.4
Eucgr.H02719 Eucalyptus grandis HOM05D001987 ORTHO05D006514 1.3e-08 63.5 108 33.3
Hund28418 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.3e-08 63.5 102 34.3
Hund29734 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.3e-08 63.5 102 34.3
Hund29823 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.3e-08 63.5 102 34.3
Hund30343 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.3e-08 63.5 102 34.3
Hund30419 Selenicereus undatus HOM05D001987 ORTHO05D006514 1.3e-08 63.5 102 34.3
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 1.7e-08 63.2 35 88.6
PSO541G5803 Papaver somniferum HOM05D001987 ORTHO05D006514 2.8e-08 62.4 106 34.0
PSO675G5335 Papaver somniferum HOM05D001987 ORTHO05D006514 2.8e-08 62.4 106 34.0
Sc17g0003730 Simmondsia chinensis HOM05D001987 ORTHO05D006514 2.8e-08 62.4 106 34.0
DCAR_032448 Daucus carota HOM05D001987 ORTHO05D006514 6.3e-08 61.2 115 30.4
Hma1.2p1_0105F.1_g050680 Hydrangea macrophylla HOM05D001987 ORTHO05D006514 1.4e-07 60.1 111 31.5
Lsat_1_v5_gn_8_132861 Lactuca sativa HOM05D001987 ORTHO05D006514 2.4e-07 59.3 106 32.1
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 4.1e-07 58.5 43 65.1
Sc25g0002540 Simmondsia chinensis HOM05D002578 ORTHO05D001488 1.2e-06 57.0 69 47.8
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 2.6e-06 55.8 39 66.7
AagrBONN_evm.TU.Sc2ySwM_362.2082 Anthoceros agrestis HOM05D001987 ORTHO05D006514 5.9e-06 54.7 108 29.6


User provided reference genes

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