Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 1.0e-291 1006.1 564 100.0
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 1.7e-145 520.4 576 59.5
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 8.1e-119 431.8 578 53.8
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 3.5e-114 416.4 580 50.7
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 1.3e-113 414.5 587 51.3
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 3.9e-113 412.9 584 48.8
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 6.7e-113 412.1 571 54.6
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 2.0e-109 400.6 583 54.0
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 5.8e-109 399.1 573 49.4
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 2.9e-108 396.7 578 50.3
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 3.8e-108 396.4 577 49.9
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 8.4e-108 395.2 577 49.9
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.4e-107 394.4 565 53.8
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 5.5e-107 392.5 577 50.8
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 6.7e-105 385.6 574 48.3
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 1.3e-103 381.3 580 50.0
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 3.7e-103 379.8 583 49.7
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 8.2e-103 378.6 572 48.1
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 3.1e-102 376.7 580 48.6
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 2.6e-101 373.6 570 54.9
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.6e-101 373.6 578 47.4
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 5.8e-101 372.5 578 47.2
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.3e-100 371.3 578 50.0
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 1.4e-99 367.9 574 48.3
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.3e-97 360.5 574 47.0
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 5.1e-97 359.4 575 45.6
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 8.7e-97 358.6 579 46.5
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 2.2e-95 354.0 574 46.3
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 4.8e-95 352.8 574 46.3
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 6.3e-95 352.4 574 46.2
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 8.2e-95 352.1 574 49.1
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.4e-94 351.3 578 47.2
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.4e-94 350.5 574 48.8
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.1e-94 349.7 576 46.7
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 1.0e-92 345.1 633 43.8
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 8.5e-92 342.0 592 45.1
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 8.5e-92 342.0 581 46.0
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 2.5e-91 340.5 615 44.7
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 3.2e-91 340.1 578 45.5
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.1e-90 337.4 485 53.8
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 4.6e-90 336.3 580 44.1
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 4.6e-90 336.3 582 45.2
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 1.0e-89 335.1 582 46.7
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 3.9e-89 333.2 571 45.0
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 3.3e-88 330.1 475 50.5
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 5.7e-88 329.3 579 45.1
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 1.7e-87 327.8 493 47.3
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 3.7e-87 326.6 552 45.1
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 4.8e-87 326.2 581 48.2
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 6.3e-87 325.9 581 45.3
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 6.3e-87 325.9 578 43.8
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.4e-86 323.9 572 48.3
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 5.9e-85 319.3 574 46.2
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 2.2e-84 317.4 579 45.1
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 3.8e-84 316.6 592 43.2
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 3.8e-84 316.6 581 45.3
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 4.7e-82 309.7 604 46.2
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 8.8e-81 305.4 478 47.5
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 3.3e-80 303.5 478 47.7
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 6.3e-79 299.3 579 42.0
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 1.4e-78 298.1 578 44.3
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 3.5e-77 293.5 579 42.3
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 2.2e-76 290.8 600 43.7
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 9.4e-75 285.4 617 41.7
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 1.2e-74 285.0 565 50.6
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 1.1e-72 278.5 423 48.0
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.6e-72 277.3 569 50.6
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 4.4e-72 276.6 581 42.0
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.3e-71 275.0 581 42.5
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 4.8e-71 273.1 578 42.9
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 2.4e-70 270.8 574 40.2
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 5.9e-69 266.2 581 40.1
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 6.5e-68 262.7 578 40.7
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 8.5e-68 262.3 612 37.6
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 1.5e-67 261.5 556 39.4
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 1.6e-66 258.1 493 43.6
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 5.2e-65 253.1 575 41.6
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 8.8e-65 252.3 577 39.2
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 2.6e-64 250.8 621 39.0
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 2.4e-62 244.2 576 41.5
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 7.7e-61 239.2 574 39.7
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 2.2e-60 237.7 575 37.9
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 2.9e-60 237.3 508 40.6
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 1.5e-59 235.0 522 40.6
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 3.2e-59 233.8 378 47.4
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 4.2e-59 233.4 584 37.2
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 7.2e-59 232.6 579 40.2
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 9.4e-59 232.3 594 38.2
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 6.1e-58 229.6 498 40.4
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.8e-57 228.0 572 37.4
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 5.2e-57 226.5 596 37.9
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 3.1e-54 217.2 655 35.3
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 5.4e-54 216.5 668 33.7
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.7e-52 211.5 676 34.3
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 2.3e-52 211.1 567 42.3
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 1.5e-51 208.4 669 33.5
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 1.9e-51 208.0 537 37.2
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 1.0e-49 202.2 669 35.6
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.3e-49 201.1 576 36.3
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.3e-49 201.1 576 36.3
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 4.0e-49 200.3 259 50.6
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 5.2e-49 199.9 572 35.5
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 6.8e-49 199.5 479 39.2
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 1.1e-46 192.2 257 48.6
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.1e-46 192.2 213 58.7
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 9.2e-46 189.1 470 38.7
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 2.0e-45 188.0 553 36.0
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 3.5e-45 187.2 633 34.1
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 7.8e-45 186.0 696 32.6
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.7e-44 184.9 635 34.0
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 2.3e-44 184.5 639 34.0
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.3e-44 184.5 367 40.6
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 8.6e-44 182.6 639 33.3
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 3.3e-43 180.6 655 36.3
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 4.3e-43 180.3 655 36.3
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 5.2e-41 173.3 566 31.3
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 4.4e-40 170.2 586 33.3
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 2.9e-39 167.5 476 36.8
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.3e-36 158.7 160 59.4
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 3.1e-33 147.5 590 36.3
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 7.5e-32 142.9 569 31.6
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 4.9e-31 140.2 556 37.6
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 7.1e-30 136.3 159 54.1
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 1.6e-29 135.2 584 30.0
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 6.0e-29 133.3 128 59.4
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 9.9e-24 115.9 694 28.7
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 8.3e-23 112.8 253 37.9
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.5e-19 101.3 59 83.1
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 3.3e-19 100.9 147 43.5
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.6e-18 98.6 152 40.1
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 8.1e-18 96.3 65 72.3
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 8.1e-18 96.3 64 73.4
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 1.4e-17 95.5 64 73.4
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 2.4e-17 94.7 80 66.2
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 4.0e-17 94.0 60 75.0
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 1.3e-15 89.0 230 37.8
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 2.2e-15 88.2 58 74.1
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 3.8e-15 87.4 58 72.4
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 4.9e-15 87.0 58 72.4
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 2.4e-14 84.7 152 36.2
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 9.3e-14 82.8 56 69.6
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 1.6e-13 82.0 103 45.6
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 6.0e-13 80.1 561 26.4
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 5.1e-12 77.0 46 84.8
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 6.6e-12 76.6 241 31.1
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.5e-11 75.5 46 82.6
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 1.3e-10 72.4 58 60.3
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 8.4e-07 59.7 47 66.0
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.9e-06 58.5 133 33.1


User provided reference genes

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