Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C501T13 Lonicera japonica HOM05D002204 ORTHO05D015753 1.9e-71 272.3 132 100.0
Dinv28312 Davidia involucrata HOM05D002204 ORTHO05D002875 1.8e-29 132.9 120 59.2
CSS0012958 Camellia sinensis var. sinensis HOM05D002204 ORTHO05D002875 5.9e-28 127.9 114 58.8
Rhsim10G0192900 Rhododendron simsii HOM05D002204 ORTHO05D002875 9.4e-26 120.6 103 60.2
Hma1.2p1_0085F.1_g044540 Hydrangea macrophylla HOM05D002204 ORTHO05D002875 1.6e-25 119.8 117 58.1
Nitab4.5_0008540g0010 Nicotiana tabacum HOM05D002204 ORTHO05D002875 2.6e-23 112.5 89 62.9
Actinidia22889 Actinidia chinensis HOM05D002204 ORTHO05D002875 4.4e-23 111.7 128 50.8
Cc07_g11990 Coffea canephora HOM05D002204 ORTHO05D002875 1.3e-22 110.2 90 65.6
ECA246G1616 Erigeron canadensis HOM05D002204 ORTHO05D000001 6.3e-22 107.8 95 61.1
Oeu021991.1 Olea europaea HOM05D002204 ORTHO05D015753 8.2e-22 107.5 103 60.2
HanXRQChr16g0531931 Helianthus annuus HOM05D002204 ORTHO05D002875 1.4e-21 106.7 96 57.3
Migut.L00780 Erythranthe guttata HOM05D002204 ORTHO05D002875 2.0e-20 102.8 86 66.3
Solyc02g082470.4 Solanum lycopersicum HOM05D002204 ORTHO05D002875 2.6e-20 102.4 94 59.6
Sopen02g027160 Solanum pennellii HOM05D002204 ORTHO05D002875 2.6e-20 102.4 94 59.6
PGSC0003DMG400001509 Solanum tuberosum HOM05D002204 ORTHO05D002875 4.5e-20 101.7 94 58.5
CAN.G1238.25 Capsicum annuum HOM05D002204 ORTHO05D002875 7.7e-20 100.9 93 58.1
GSVIVG01022299001 Vitis vinifera HOM05D002204 ORTHO05D015753 7.7e-20 100.9 80 62.5
Nitab4.5_0001467g0130 Nicotiana tabacum HOM05D002204 ORTHO05D002875 1.7e-19 99.8 111 50.5
Peaxi162Scf00040g03134 Petunia axillaris HOM05D002204 ORTHO05D002875 1.7e-19 99.8 89 58.4
SalBow5G0659 Salvia bowleyana HOM05D002204 ORTHO05D002875 2.2e-19 99.4 118 50.0
Rhsim06G0004700 Rhododendron simsii HOM05D002204 ORTHO05D002875 3.8e-19 98.6 117 47.0
PGR102G3164 Punica granatum HOM05D002204 ORTHO05D002875 6.5e-19 97.8 117 48.7
Haze_03628 Corylus avellana HOM05D000109 ORTHO05D002875 1.1e-18 97.1 106 50.0
Actinidia15511 Actinidia chinensis HOM05D002204 ORTHO05D002875 1.4e-18 96.7 106 49.1
MSTRG.3635 Avicennia marina HOM05D002204 ORTHO05D002875 5.5e-18 94.7 89 58.4
MSTRG.24917 Avicennia marina HOM05D002204 ORTHO05D002875 1.2e-17 93.6 88 53.4
Lj4A810T53 Lonicera japonica HOM05D002204 ORTHO05D002875 1.6e-17 93.2 91 56.0
PGSC0003DMG400009991 Solanum tuberosum HOM05D002204 ORTHO05D002875 1.6e-17 93.2 89 52.8
Eucgr.A00114 Eucalyptus grandis HOM05D002204 ORTHO05D015753 4.7e-17 91.7 116 48.3
Eucgr.J02541 Eucalyptus grandis HOM05D002204 ORTHO05D002875 4.7e-17 91.7 116 48.3
QL06p053171 Quercus lobata HOM05D002204 ORTHO05D002875 6.1e-17 91.3 77 57.1
Nitab4.5_0009646g0050 Nicotiana tabacum HOM05D002204 ORTHO05D002875 1.0e-16 90.5 89 51.7
Sc02g0009200 Simmondsia chinensis HOM05D002204 ORTHO05D002875 1.0e-16 90.5 102 45.1
CsaV3_6G047890 Cucumis sativus L. HOM05D002204 ORTHO05D002875 1.8e-16 89.7 111 45.9
CAN.G311.140 Capsicum annuum HOM05D002204 ORTHO05D002875 3.0e-16 89.0 89 51.7
Migut.C00370 Erythranthe guttata HOM05D002204 ORTHO05D002875 3.0e-16 89.0 79 54.4
Cc10_g00420 Coffea canephora HOM05D002204 ORTHO05D002875 3.9e-16 88.6 89 52.8
SalBow7G2538 Salvia bowleyana HOM05D002204 ORTHO05D002875 3.9e-16 88.6 90 48.9
Solyc04g082620.3 Solanum lycopersicum HOM05D002204 ORTHO05D002875 3.9e-16 88.6 89 50.6
Sopen04g036250 Solanum pennellii HOM05D002204 ORTHO05D002875 3.9e-16 88.6 89 50.6
TAR628G0862 Trochodendron aralioides HOM05D002204 ORTHO05D002875 1.1e-15 87.0 102 49.0
Sed0008668 Sechium edule HOM05D002204 ORTHO05D002875 1.5e-15 86.7 119 43.7
GSVIVG01013402001 Vitis vinifera HOM05D002204 ORTHO05D002875 1.5e-15 86.7 78 56.4
MSTRG.995 Avicennia marina HOM05D002204 ORTHO05D002875 2.6e-15 85.9 69 58.0
SGA_v2.0_scaffold133G34586 Striga asiatica HOM05D002204 ORTHO05D002875 9.7e-15 84.0 90 46.7
Hund03595 Selenicereus undatus HOM05D002204 ORTHO05D002875 1.7e-14 83.2 106 46.2
Oeu035852.2 Olea europaea HOM05D002204 ORTHO05D002875 2.2e-14 82.8 80 50.0
Peaxi162Scf00680g00118 Petunia axillaris HOM05D002204 ORTHO05D002875 2.2e-14 82.8 88 51.1
Duzib147G1495 Durio zibethinus HOM05D002204 ORTHO05D002875 2.8e-14 82.4 78 59.0
ECA238G1625 Erigeron canadensis HOM05D002204 ORTHO05D002875 2.8e-14 82.4 92 47.8
Sc07g0001410 Simmondsia chinensis HOM05D002204 ORTHO05D002875 3.7e-14 82.0 81 51.9
ClCG01G020930 Citrullus lanatus HOM05D002204 ORTHO05D002875 4.8e-14 81.6 123 39.0
Prupe.7G185000 Prunus persica HOM05D002204 ORTHO05D002875 8.2e-14 80.9 92 48.9
Manes.05G125100 Manihot esculenta HOM05D002204 ORTHO05D002875 1.8e-13 79.7 78 51.3
Potri.007G059000 Populus trichocarpa HOM05D002204 ORTHO05D002875 1.8e-13 79.7 79 55.7
COL.COLO4_22561 Corchorus olitorius HOM05D002204 ORTHO05D002875 2.4e-13 79.3 88 51.1
Potri.005G254000 Populus trichocarpa HOM05D002204 ORTHO05D002875 2.4e-13 79.3 76 52.6
Hund01790 Selenicereus undatus HOM05D002204 ORTHO05D002875 2.4e-13 79.3 78 52.6
CDE02G2925 Ceratophyllum demersum HOM05D002204 ORTHO05D002875 3.1e-13 79.0 91 46.2
Gohir.A02G178850 Gossypium hirsutum HOM05D002204 ORTHO05D015753 7.0e-13 77.8 78 55.1
Gohir.D03G000900 Gossypium hirsutum HOM05D002204 ORTHO05D002875 7.0e-13 77.8 78 55.1
Gorai.003G001300 Gossypium raimondii HOM05D002204 ORTHO05D002875 7.0e-13 77.8 78 55.1
Phvul.003G271000 Phaseolus vulgaris HOM05D002204 ORTHO05D002875 7.0e-13 77.8 85 51.8
ClCG01G015810 Citrullus lanatus HOM05D002204 ORTHO05D002875 9.1e-13 77.4 73 50.7
EL10Ac1g01902 Beta vulgaris HOM05D002204 ORTHO05D002875 1.2e-12 77.0 89 48.3
QL02p015199 Quercus lobata HOM05D002204 ORTHO05D002875 1.6e-12 76.6 92 46.7
EL10Ac6g15042 Beta vulgaris HOM05D002204 ORTHO05D002875 2.0e-12 76.3 119 37.8
DCAR_016789 Daucus carota HOM05D002204 ORTHO05D002875 2.0e-12 76.3 76 55.3
AUR62016567 Chenopodium quinoa HOM05D002204 ORTHO05D002875 4.5e-12 75.1 88 45.5
MELO3C008016.2 Cucumis melo HOM05D002204 ORTHO05D002875 5.9e-12 74.7 73 47.9
CsaV3_6G042090 Cucumis sativus L. HOM05D002204 ORTHO05D002875 5.9e-12 74.7 73 47.9
Sabra05G0197000 Salix brachista HOM05D002204 ORTHO05D002875 5.9e-12 74.7 70 51.4
Ah.11g041810 Amaranthus hybridus HOM05D002204 ORTHO05D002875 7.7e-12 74.3 70 57.1
unitig_32.g11841 Utricularia gibba HOM05D002204 ORTHO05D002875 7.7e-12 74.3 54 68.5
arahy.Tifrunner.gnm1.ann1.QAQH8E Arachis hypogaea HOM05D002204 ORTHO05D002875 1.0e-11 73.9 90 44.4
Ca_02845_v3 Cicer arietinum L. HOM05D002204 ORTHO05D002875 1.3e-11 73.6 73 52.1
arahy.Tifrunner.gnm1.ann1.DF5JNQ Arachis hypogaea HOM05D002204 ORTHO05D002875 1.7e-11 73.2 90 44.4
Lalb_Chr05g0229591 Lupinus albus HOM05D002204 ORTHO05D002875 1.7e-11 73.2 122 37.7
TPR.G13732 Trifolium pratense HOM05D002204 ORTHO05D002875 2.2e-11 72.8 98 44.9
CANSAT25G1037 Cannabis sativa HOM05D002204 ORTHO05D002875 3.8e-11 72.0 91 44.0
Medtr8g073190 Medicago truncatula HOM05D002204 ORTHO05D002875 3.8e-11 72.0 91 46.2
TWI09G0074 Tripterygium wilfordii HOM05D002204 ORTHO05D002875 3.8e-11 72.0 81 51.9
Ciclev10027213m.g Citrus clementina HOM05D002204 ORTHO05D002875 5.0e-11 71.6 70 52.9
Lsat_1_v5_gn_2_660 Lactuca sativa HOM05D002204 ORTHO05D002875 5.0e-11 71.6 83 45.8
CDE04G0343 Ceratophyllum demersum HOM05D002204 ORTHO05D015753 8.5e-11 70.9 91 45.1
MD02G1114000 Malus domestica HOM05D002204 ORTHO05D002875 8.5e-11 70.9 86 47.7
Cpa.g.sc6.359 Carica papaya HOM05D002204 ORTHO05D002875 1.1e-10 70.5 68 58.8
Lj4g0027136 Lotus japonicus HOM05D002204 ORTHO05D002875 1.1e-10 70.5 112 40.2
VMungo1215G3413 Vigna mungo HOM05D002204 ORTHO05D002875 1.5e-10 70.1 64 53.1
CAN.G27.58 Capsicum annuum HOM05D000032 ORTHO05D014358 2.5e-10 69.3 72 55.6
COL.COLO4_37749 Corchorus olitorius HOM05D002204 ORTHO05D010558 3.2e-10 68.9 65 56.9
Phvul.002G117600 Phaseolus vulgaris HOM05D002204 ORTHO05D002875 3.2e-10 68.9 64 51.6
MBI08_g06881_MAGBIO Magnolia biondii HOM05D002204 ORTHO05D002875 5.5e-10 68.2 89 47.2
Ciclev10000190m.g Citrus clementina HOM05D002204 ORTHO05D002875 7.2e-10 67.8 68 52.9
Thecc.08G063100 Theobroma cacao HOM05D002204 ORTHO05D002875 7.2e-10 67.8 74 50.0
HanXRQChr14g0427841 Helianthus annuus HOM05D002204 ORTHO05D002875 9.4e-10 67.4 73 41.1
CiPaw.07G135500 Carya illinoinensis HOM05D002204 ORTHO05D002875 1.2e-09 67.0 75 50.7
Cpa.g.sc26.160 Carica papaya HOM05D002204 ORTHO05D002875 1.6e-09 66.6 100 41.0
Glyma.09G197000 Glycine max HOM05D002204 ORTHO05D002875 1.6e-09 66.6 86 50.0
Gohir.D01G088400 Gossypium hirsutum HOM05D002204 ORTHO05D002875 2.1e-09 66.2 65 53.8
Gorai.002G114100 Gossypium raimondii HOM05D002204 ORTHO05D002875 2.1e-09 66.2 65 53.8
Glyma.16G111800 Glycine max HOM05D002204 ORTHO05D002875 2.7e-09 65.9 86 47.7
CAN.G1167.2 Capsicum annuum HOM05D002204 ORTHO05D015753 3.6e-09 65.5 65 55.4
AUR62042588 Chenopodium quinoa HOM05D002204 ORTHO05D002875 3.6e-09 65.5 67 53.7
Duzib116G0792 Durio zibethinus HOM05D002204 ORTHO05D002875 3.6e-09 65.5 66 53.0
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 4.7e-09 65.1 75 41.3
AL6G35920 Arabidopsis lyrata HOM05D002204 ORTHO05D002875 4.7e-09 65.1 110 39.1
arahy.Tifrunner.gnm1.ann1.770S43 Arachis hypogaea HOM05D002204 ORTHO05D002875 4.7e-09 65.1 64 48.4
arahy.Tifrunner.gnm1.ann1.9UP1GZ Arachis hypogaea HOM05D002204 ORTHO05D002875 4.7e-09 65.1 64 48.4
Gohir.A01G103100 Gossypium hirsutum HOM05D002204 ORTHO05D002875 4.7e-09 65.1 99 42.4
AT5G24360 Arabidopsis thaliana HOM05D002204 ORTHO05D002875 8.0e-09 64.3 110 36.4
Sed0026219 Sechium edule HOM05D002467 ORTHO05D002875 8.0e-09 64.3 80 46.2
Atru.chr13.93 Acer truncatum HOM05D002204 ORTHO05D030794 1.0e-08 63.9 70 45.7
Haze_22837 Corylus avellana HOM05D002204 ORTHO05D002875 1.4e-08 63.5 77 46.8
unitig_46.g18026 Utricularia gibba HOM05D002204 ORTHO05D002875 1.4e-08 63.5 68 45.6
Glyma.01G157800 Glycine max HOM05D002204 ORTHO05D002875 2.3e-08 62.8 65 53.8
Duzib093G0243 Durio zibethinus HOM05D002204 ORTHO05D002875 4.0e-08 62.0 65 52.3
TWI36G0160 Tripterygium wilfordii HOM05D002204 ORTHO05D002875 4.0e-08 62.0 66 47.0
Lj2g0022367 Lotus japonicus HOM05D002204 ORTHO05D002875 6.7e-08 61.2 65 50.8
Carub.0006s2220 Capsella rubella HOM05D002204 ORTHO05D002875 8.8e-08 60.8 77 44.2
Ca_24990_v3 Cicer arietinum L. HOM05D002204 ORTHO05D002875 8.8e-08 60.8 64 50.0
Medtr5g024510 Medicago truncatula HOM05D002204 ORTHO05D002875 1.5e-07 60.1 96 41.7
A06p35180 Brassica napus HOM05D002204 ORTHO05D002875 2.6e-07 59.3 77 41.6
Atru.chr3.25 Acer truncatum HOM05D002204 ORTHO05D015753 4.4e-07 58.5 80 45.0
C07p43380 Brassica napus HOM05D002204 ORTHO05D002875 4.4e-07 58.5 63 46.0
BolC7t44865H Brassica oleracea HOM05D002204 ORTHO05D002875 4.4e-07 58.5 63 46.0
CARHR107680 Cardamine hirsuta HOM05D002204 ORTHO05D002875 4.4e-07 58.5 76 48.7
CARHR189060 Cardamine hirsuta HOM05D002204 ORTHO05D002875 4.4e-07 58.5 70 40.0
BraA06t26438Z Brassica rapa HOM05D002204 ORTHO05D002875 5.7e-07 58.2 77 40.3
THA.LOC104813183 Tarenaya hassleriana HOM05D002204 ORTHO05D002875 5.7e-07 58.2 64 43.8
SHI29556 Sapria himalayana HOM05D002204 ORTHO05D015753 7.5e-07 57.8 64 51.6
TWI56G0036 Tripterygium wilfordii HOM05D002204 ORTHO05D002875 1.3e-06 57.0 76 43.4
BcaB08g34739 Brassica carinata HOM05D002204 ORTHO05D002875 2.8e-06 55.8 69 46.4
BcaC01g02913 Brassica carinata HOM05D002204 ORTHO05D002875 2.8e-06 55.8 69 46.4
A06p33930 Brassica napus HOM05D002204 ORTHO05D002875 2.8e-06 55.8 69 46.4
C03p58450 Brassica napus HOM05D002204 ORTHO05D002875 2.8e-06 55.8 69 46.4
BraA06t26326Z Brassica rapa HOM05D002204 ORTHO05D002875 2.8e-06 55.8 69 46.4
Psat2g147920 Pisum sativum HOM05D002204 ORTHO05D002875 2.8e-06 55.8 74 43.2
Sp3g30880 Schrenkiella parvula HOM05D002204 ORTHO05D002875 3.7e-06 55.5 80 38.8
TPR.G33891 Trifolium pratense HOM05D002204 ORTHO05D002875 3.7e-06 55.5 64 43.8
Aa31LG8G14810 Aethionema arabicum HOM05D002204 ORTHO05D002875 6.3e-06 54.7 99 38.4
BolC3t18103H Brassica oleracea HOM05D002204 ORTHO05D002875 6.3e-06 54.7 69 44.9
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 8.2e-06 54.3 65 46.2
Glyma.11G087200 Glycine max HOM05D002204 ORTHO05D002875 8.2e-06 54.3 65 46.2


User provided reference genes

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