Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C45T13 Lonicera japonica HOM05D002802 ORTHO05D003166 2.4e-29 131.3 59 100.0
RcHm_v2.0_Chr6g0277511 Rosa chinensis HOM05D002802 ORTHO05D003166 1.2e-17 92.4 49 77.6
FvH4_2g14912 Fragaria vesca HOM05D002802 ORTHO05D003166 2.7e-17 91.3 49 79.6
FAN15G1194 Fragaria x ananassa HOM05D002802 ORTHO05D003166 2.7e-17 91.3 49 79.6
FAN27G2724 Fragaria x ananassa HOM05D002802 ORTHO05D003166 2.7e-17 91.3 49 79.6
Dinv15377 Davidia involucrata HOM05D002802 ORTHO05D003166 3.6e-17 90.9 49 77.6
TAR629G2940 Trochodendron aralioides HOM05D002802 ORTHO05D003166 1.4e-16 89.0 49 75.5
FAN24G2271 Fragaria x ananassa HOM05D002802 ORTHO05D003166 2.3e-16 88.2 49 77.6
Nn3g19222 Nelumbo nucifera HOM05D002802 ORTHO05D003166 2.3e-16 88.2 49 69.4
TAR629G2691 Trochodendron aralioides HOM05D002802 ORTHO05D003166 3.0e-16 87.8 49 73.5
MSTRG.17040 Avicennia marina HOM05D002802 ORTHO05D003166 3.9e-16 87.4 49 71.4
MSTRG.17512 Avicennia marina HOM05D002802 ORTHO05D003166 3.9e-16 87.4 49 71.4
CSS0026055 Camellia sinensis var. sinensis HOM05D002802 ORTHO05D003166 3.9e-16 87.4 50 78.0
CSS0046212 Camellia sinensis var. sinensis HOM05D002802 ORTHO05D003166 3.9e-16 87.4 50 78.0
CiPaw.05G212100 Carya illinoinensis HOM05D002802 ORTHO05D003166 3.9e-16 87.4 49 75.5
Manes.13G089600 Manihot esculenta HOM05D002802 ORTHO05D003166 6.7e-16 86.7 49 73.5
PGR042G1540 Punica granatum HOM05D002802 ORTHO05D003166 6.7e-16 86.7 49 73.5
QL09p020509 Quercus lobata HOM05D002802 ORTHO05D003166 6.7e-16 86.7 49 73.5
Duzib106G0873 Durio zibethinus HOM05D002802 ORTHO05D003166 8.8e-16 86.3 49 75.5
CiPaw.05G211800 Carya illinoinensis HOM05D002802 ORTHO05D003166 1.1e-15 85.9 49 73.5
Sc17g0000170 Simmondsia chinensis HOM05D002802 ORTHO05D003166 1.1e-15 85.9 49 69.4
Cpa.g.sc43.147 Carica papaya HOM05D002802 ORTHO05D003166 1.9e-15 85.1 49 71.4
Cfa015557 Carpinus fangiana HOM05D002802 ORTHO05D003166 1.9e-15 85.1 49 73.5
COL.COLO4_32813 Corchorus olitorius HOM05D002802 ORTHO05D003166 1.9e-15 85.1 49 73.5
Prupe.3G017000 Prunus persica HOM05D002802 ORTHO05D003166 2.5e-15 84.7 49 75.5
Duzib177G0250 Durio zibethinus HOM05D002802 ORTHO05D003166 4.3e-15 84.0 49 71.4
Gohir.A13G157800 Gossypium hirsutum HOM05D002802 ORTHO05D003166 4.3e-15 84.0 49 71.4
vmacro00685 Vaccinium macrocarpon HOM05D002802 ORTHO05D003166 4.3e-15 84.0 45 80.0
Phvul.008G182600 Phaseolus vulgaris HOM05D002802 ORTHO05D003166 5.7e-15 83.6 46 71.7
Lalb_Chr15g0083651 Lupinus albus HOM05D002802 ORTHO05D003166 7.4e-15 83.2 49 71.4
Actinidia27125 Actinidia chinensis HOM05D002802 ORTHO05D003166 9.7e-15 82.8 46 73.9
Actinidia28378 Actinidia chinensis HOM05D002802 ORTHO05D003166 9.7e-15 82.8 46 73.9
Atru.chr12.1833 Acer truncatum HOM05D002802 ORTHO05D003166 1.3e-14 82.4 49 71.4
MELO3C019802.2 Cucumis melo HOM05D002802 ORTHO05D003166 1.3e-14 82.4 49 69.4
Eucgr.F04338 Eucalyptus grandis HOM05D002802 ORTHO05D003166 1.3e-14 82.4 49 69.4
CsaV3_6G036500 Cucumis sativus L. HOM05D002802 ORTHO05D003166 1.7e-14 82.0 49 67.3
MD14G1083500 Malus domestica HOM05D002802 ORTHO05D003166 1.7e-14 82.0 49 71.4
Psat1g151480 Pisum sativum HOM05D002802 ORTHO05D003166 1.7e-14 82.0 46 71.7
Rhsim09G0008000 Rhododendron simsii HOM05D002802 ORTHO05D003166 1.7e-14 82.0 45 73.3
ClCG09G009970 Citrullus lanatus HOM05D002802 ORTHO05D003166 2.8e-14 81.3 49 69.4
Prupe.4G287100 Prunus persica HOM05D002802 ORTHO05D003166 3.7e-14 80.9 49 73.5
Aqoxy6G03046 Aquilegia oxysepala HOM05D002802 ORTHO05D003166 4.8e-14 80.5 49 69.4
CsaV3_7G024650 Cucumis sativus L. HOM05D002802 ORTHO05D003166 4.8e-14 80.5 49 65.3
Gohir.A06G000500 Gossypium hirsutum HOM05D002802 ORTHO05D003166 4.8e-14 80.5 49 67.3
Aqoxy5G00171 Aquilegia oxysepala HOM05D002802 ORTHO05D003166 6.3e-14 80.1 49 69.4
Hma1.2p1_0316F.1_g122940 Hydrangea macrophylla HOM05D002802 ORTHO05D003166 8.2e-14 79.7 50 70.0
Thecc.05G224000 Theobroma cacao HOM05D002802 ORTHO05D003166 8.2e-14 79.7 49 69.4
CSS0023749 Camellia sinensis var. sinensis HOM05D002802 ORTHO05D003166 1.1e-13 79.3 49 69.4
Aqoxy4G00538 Aquilegia oxysepala HOM05D002802 ORTHO05D003166 1.4e-13 79.0 49 67.3
Ca_02413_v3 Cicer arietinum L. HOM05D002802 ORTHO05D003166 1.4e-13 79.0 43 74.4
Cc00_g24470 Coffea canephora HOM05D002802 ORTHO05D003166 1.4e-13 79.0 50 66.0
Cc09_g02960 Coffea canephora HOM05D002802 ORTHO05D003166 1.4e-13 79.0 50 66.0
Aqoxy3G00360 Aquilegia oxysepala HOM05D002802 ORTHO05D003166 2.4e-13 78.2 49 67.3
Medtr2g088950 Medicago truncatula HOM05D002802 ORTHO05D003166 3.1e-13 77.8 46 65.2
Medtr2g437670 Medicago truncatula HOM05D002802 ORTHO05D003166 3.1e-13 77.8 46 65.2
Hund25194 Selenicereus undatus HOM05D002802 ORTHO05D003166 3.1e-13 77.8 51 64.7
HanXRQChr08g0225791 Helianthus annuus HOM05D002802 ORTHO05D003166 4.1e-13 77.4 49 63.3
TPR.G30926 Trifolium pratense HOM05D002802 ORTHO05D003166 4.1e-13 77.4 43 72.1
Nitab4.5_0002088g0020 Nicotiana tabacum HOM05D002802 ORTHO05D003166 5.3e-13 77.0 49 69.4
Nitab4.5_0000061g0020 Nicotiana tabacum HOM05D002802 ORTHO05D003166 6.9e-13 76.6 49 69.4
Glyma.02G215200 Glycine max HOM05D002802 ORTHO05D003166 9.1e-13 76.3 44 70.5
Glyma.14G182500 Glycine max HOM05D002802 ORTHO05D003166 9.1e-13 76.3 44 70.5
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 9.1e-13 76.3 46 67.4
Potri.010G222500 Populus trichocarpa HOM05D002802 ORTHO05D003166 1.7e-11 72.0 49 63.3
Gohir.D13G162700 Gossypium hirsutum HOM05D002802 ORTHO05D003166 2.2e-11 71.6 49 63.3
Gorai.013G184900 Gossypium raimondii HOM05D002802 ORTHO05D003166 2.2e-11 71.6 49 63.3
Lsat_1_v5_gn_8_4000 Lactuca sativa HOM05D002802 ORTHO05D003166 2.2e-11 71.6 40 70.0
Nitab4.5_0002027g0210 Nicotiana tabacum HOM05D002508 ORTHO05D008845 2.2e-11 71.6 49 65.3
AUR62003127 Chenopodium quinoa HOM05D000349 ORTHO05D003166 3.8e-11 70.9 41 73.2
AUR62007947 Chenopodium quinoa HOM05D002802 ORTHO05D003166 3.8e-11 70.9 41 73.2
AUR62035326 Chenopodium quinoa HOM05D002802 ORTHO05D003166 3.8e-11 70.9 41 73.2
Sed0025330 Sechium edule HOM05D002802 ORTHO05D003166 3.8e-11 70.9 42 61.9
arahy.Tifrunner.gnm1.ann1.39MIH8 Arachis hypogaea HOM05D002802 ORTHO05D003166 5.0e-11 70.5 49 65.3
Ciclev10031987m.g Citrus clementina HOM05D002802 ORTHO05D003166 5.0e-11 70.5 49 57.1
Ah.06g194660 Amaranthus hybridus HOM05D002802 ORTHO05D003166 6.5e-11 70.1 55 60.0
arahy.Tifrunner.gnm1.ann1.PKF7IH Arachis hypogaea HOM05D002802 ORTHO05D003166 1.1e-10 69.3 49 63.3
Sed0027805 Sechium edule HOM05D002802 ORTHO05D003166 1.4e-10 68.9 49 63.3
MBI19_g09319_MAGBIO Magnolia biondii HOM05D002802 ORTHO05D003166 1.9e-10 68.6 49 51.0
ECA233G6210 Erigeron canadensis HOM05D002802 ORTHO05D003166 2.5e-10 68.2 49 59.2
Lj6g0027678 Lotus japonicus HOM05D002802 ORTHO05D003166 7.2e-10 66.6 43 69.8
AL1G25610 Arabidopsis lyrata HOM05D002802 ORTHO05D003166 1.6e-09 65.5 51 54.9
Aa31LG1G1150 Aethionema arabicum HOM05D002802 ORTHO05D003166 6.1e-09 63.5 45 51.1
THA.LOC104799401 Tarenaya hassleriana HOM05D002802 ORTHO05D003166 7.9e-09 63.2 43 58.1
AT1G13810 Arabidopsis thaliana HOM05D002802 ORTHO05D003166 2.3e-08 61.6 51 52.9
SGA_v2.0_scaffold184G40012 Striga asiatica HOM05D002802 ORTHO05D003166 3.0e-08 61.2 54 48.1
ATR0589G089 Amborella trichopoda HOM05D002802 ORTHO05D003166 4.4e-07 57.4 60 46.7
Carub.0001s1353 Capsella rubella HOM05D002802 ORTHO05D003166 4.4e-07 57.4 45 53.3
Oeu010343.1 Olea europaea HOM05D002802 ORTHO05D003166 9.7e-07 56.2 33 72.7
CDE10G0013 Ceratophyllum demersum HOM05D002802 ORTHO05D003166 1.3e-06 55.8 44 45.5
Thhalv10008304m.g Eutrema salsugineum HOM05D002802 ORTHO05D003166 1.3e-06 55.8 53 47.2


User provided reference genes

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